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ORCIDPeter J. Ortoleva
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Journal Articles
- 2016
[j12]Endre T. Somogyi, Andrew Abi Mansour, Peter J. Ortoleva:
ProtoMD: A prototyping toolkit for multiscale molecular dynamics. Comput. Phys. Commun. 202: 337-350 (2016)- 2015
- [j11]Stephen Pankavich, Peter J. Ortoleva:
A Review of Two Multiscale Methods for the Simulation of Macromolecular Assemblies: Multiscale Perturbation and Multiscale Factorization. Comput. 3(1): 29-57 (2015) - 2012
- [j10]Abhishek Singharoy, Harshad Joshi, Peter J. Ortoleva:
Multiscale Macromolecular Simulation: Role of Evolving Ensembles. J. Chem. Inf. Model. 52(10): 2638-2649 (2012) - 2009
- [j9]Yinglong Miao
, Peter J. Ortoleva:
Molecular dynamics/order parameter extrapolation for bionanosystem simulations. J. Comput. Chem. 30(3): 423-437 (2009) - 2007
- [j8]Jingjun Sun, Kagan Tuncay, Alaa Abi-Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter J. Ortoleva:
Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12. Algorithms Mol. Biol. 2 (2007) - [j7]Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J. Ortoleva:
Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory. BMC Bioinform. 8 (2007) - [j6]Jianmiao Fan, Kagan Tuncay, Peter J. Ortoleva:
Chromosome segregation in Escherichia coli division: A free energy-driven string model. Comput. Biol. Chem. 31(4): 257-264 (2007) - [j5]Kagan Tuncay, Lisa Ensman, Jingjun Sun, Alaa Abi-Haidar, Frank Stanley, Michael Trelinski, Peter J. Ortoleva:
Transcriptional Regulatory Networks via Gene Ontology and Expression Data. Silico Biol. 7(1): 21-34 (2007) - 2006
- [j4]Dong-Hoon Sheen, Kagan Tuncay, Chang-Eob Baag, Peter J. Ortoleva:
Parallel implementation of a velocity-stress staggered-grid finite-difference method for 2-D poroelastic wave propagation. Comput. Geosci. 32(8): 1182-1191 (2006) - 2004
- [j3]Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J. Ortoleva:
Efficient solution technique for solving the Poisson-Boltzmann equation. J. Comput. Chem. 25(8): 1068-1074 (2004) - 2003
- [j2]Elizabeth L. Weitzke, Peter J. Ortoleva:
Simulating cellular dynamics through a coupled transcription, translation, metabolic model. Comput. Biol. Chem. 27(4-5): 469-480 (2003) - 2002
- [j1]Khuloud Jaqaman, Peter J. Ortoleva:
New space warping method for the simulation of large-scale macromolecular conformational changes. J. Comput. Chem. 23(4): 484-491 (2002)
Coauthor Index
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