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ORCIDAlbert J. Kooistra
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Journal Articles
- 2023
[j13]Gáspár Pándy-Szekeres, Jimmy Caroli, Alibek Mamyrbekov, Ali A Kermani, György M. Keserü, Albert J. Kooistra
, David E. Gloriam:
GPCRdb in 2023: state-specific structure models using AlphaFold2 and new ligand resources. Nucleic Acids Res. 51(D1): 395-402 (2023)- [j12]Georgi K. Kanev, Yaran Zhang, Albert J. Kooistra, Andreas Bender, Rob Leurs, David Bailey, Thomas Würdinger, Chris de Graaf, Iwan J. P. de Esch, Bart A. Westerman:
Predicting the target landscape of kinase inhibitors using 3D convolutional neural networks. PLoS Comput. Biol. 19(9) (2023) - 2022
- [j11]Dominique Sydow, Eva Aßmann, Albert J. Kooistra, Friedrich Rippmann, Andrea Volkamer:
KiSSim: Predicting Off-Targets from Structural Similarities in the Kinome. J. Chem. Inf. Model. 62(10): 2600-2616 (2022) - [j10]Gáspár Pándy-Szekeres, Mauricio Esguerra, Alexander S. Hauser, Jimmy Caroli, Christian Munk, Steven Pilger, György M. Keserü, Albert J. Kooistra, David E. Gloriam:
The G protein database, GproteinDb. Nucleic Acids Res. 50(D1): 518-525 (2022) - 2021
- [j9]Albert J. Kooistra, Stefan Mordalski, Gáspár Pándy-Szekeres, Mauricio Esguerra, Alibek Mamyrbekov, Christian Munk, György M. Keserü, David E. Gloriam:
GPCRdb in 2021: integrating GPCR sequence, structure and function. Nucleic Acids Res. 49(Database-Issue): D335-D343 (2021) - [j8]Georgi K. Kanev, Chris de Graaf, Bart A. Westerman, Iwan J. P. de Esch, Albert J. Kooistra:
KLIFS: an overhaul after the first 5 years of supporting kinase research. Nucleic Acids Res. 49(Database-Issue): D562-D569 (2021) - 2017
- [j7]Ross McGuire, Stefan Verhoeven, Márton Vass, Gerrit Vriend, Iwan J. P. de Esch, Scott J. Lusher, Rob Leurs, Lars Ridder, Albert J. Kooistra, Tina Ritschel, Chris de Graaf:
3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine. J. Chem. Inf. Model. 57(2): 115-121 (2017) - 2016
- [j6]Albert J. Kooistra, Georgi K. Kanev, Oscar P. J. van Linden, Rob Leurs, Iwan J. P. de Esch, Chris de Graaf:
KLIFS: a structural kinase-ligand interaction database. Nucleic Acids Res. 44(Database-Issue): 365-371 (2016) - 2015
- [j5]Oscar Méndez-Lucio, Albert J. Kooistra, Chris de Graaf, Andreas Bender, José L. Medina-Franco:
Analyzing Multitarget Activity Landscapes Using Protein-Ligand Interaction Fingerprints: Interaction Cliffs. J. Chem. Inf. Model. 55(2): 251-262 (2015) - [j4]Sabine Schultes, Albert J. Kooistra, Henry F. Vischer, Saskia Nijmeijer, Eric E. J. Haaksma, Rob Leurs, Iwan J. P. de Esch, Chris de Graaf:
Combinatorial Consensus Scoring for Ligand-Based Virtual Fragment Screening: A Comparative Case Study for Serotonin 5-HT3A, Histamine H1, and Histamine H4 Receptors. J. Chem. Inf. Model. 55(5): 1030-1044 (2015) - [j3]Albert J. Kooistra, Rob Leurs, Iwan J. P. de Esch, Chris de Graaf:
Structure-Based Prediction of G-Protein-Coupled Receptor Ligand Function: A β-Adrenoceptor Case Study. J. Chem. Inf. Model. 55(5): 1045-1061 (2015) - 2012
- [j2]Francesco Sirci, Enade P. Istyastono, Henry F. Vischer, Albert J. Kooistra, Saskia Nijmeijer, Martien Kuijer, Maikel Wijtmans, Raimund Mannhold, Rob Leurs, Iwan J. P. de Esch, Chris de Graaf:
Virtual Fragment Screening: Discovery of Histamine H3 Receptor Ligands Using Ligand-Based and Protein-Based Molecular Fingerprints. J. Chem. Inf. Model. 52(12): 3308-3324 (2012) - 2010
- [j1]Albert J. Kooistra, Thomas W. Binsl, Johannes H. G. M. van Beek, Chris de Graaf, Jaap Heringa:
Electron Density Fingerprints (EDprints): Virtual Screening Using Assembled Information of Electron Density. J. Chem. Inf. Model. 50(10): 1772-1780 (2010)
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