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ORCIDAhmet Ay
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- affiliation: Colgate University, Hamilton, NY, USA
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2020 – today
- 2022
[j10]Yuanfang Ren
, Aisharjya Sarkar, Pierangelo Veltri, Ahmet Ay, Alin Dobra, Tamer Kahveci:
Pattern Discovery in Multilayer Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 19(2): 741-752 (2022)- 2021
- [j9]Kevin Chow, Aisharjya Sarkar, Rasha Elhesha, Pietro Cinaglia, Ahmet Ay, Tamer Kahveci:
ANCA: Alignment-Based Network Construction Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 18(2): 512-524 (2021)
2010 – 2019
- 2019
- [j8]Yuanfang Ren, Ahmet Ay, Alin Dobra, Tamer Kahveci:
Characterizing building blocks of resource constrained biological networks. BMC Bioinform. 20-S(12): 318:1-318:14 (2019) - [c5]Yuanfang Ren, Aisharjya Sarkar, Ahmet Ay, Alin Dobra, Tamer Kahveci:
Finding Conserved Patterns in Multilayer Networks. BCB 2019: 97-102 - 2018
- [j7]Yuanfang Ren, Ahmet Ay, Tamer Kahveci:
Shortest path counting in probabilistic biological networks. BMC Bioinform. 19(1): 465:1-465:19 (2018) - [j6]Yuanfang Ren, Ahmet Ay, Travis A. Gerke, Tamer Kahveci:
Identification of jointly correlated gene sets. J. Bioinform. Comput. Biol. 16(5): 1840019:1-1840019:23 (2018) - [j5]Md Abdul Alim, Ahmet Ay, Md Mahmudul Hasan, My T. Thai, Tamer Kahveci:
Construction of Signaling Pathways with RNAi Data and Multiple Reference Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 15(4): 1079-1091 (2018) - [c4]Kevin Chow, Ahmet Ay, Rasha Elhesha, Tamer Kahveci:
ANCA: Alignment-based Network Construction Algorithm. BCB 2018: 21-26 - [c3]Yuanfang Ren, Ahmet Ay, Alin Dobra, Tamer Kahveci:
Characterizing Building Blocks of Resource Constrained Biological Networks. BCB 2018: 581-582 - 2017
- [j4]Necmettin Yildirim, Mehmet Emin Aktas, Seyma Nur Ozcan, Esra Akbas, Ahmet Ay:
Differential transcriptional regulation by alternatively designed mechanisms: A mathematical modeling approach. Silico Biol. 12(3-4): 95-127 (2017) - 2016
- [j3]Yuanfang Ren, Qiyao Wang, Md Mahmudul Hasan, Ahmet Ay, Tamer Kahveci:
Identifying the topology of signaling networks from partial RNAi data. BMC Syst. Biol. 10(S-2): 53 (2016) - 2015
- [j2]Ahmet Ay, Dihong Gong, Tamer Kahveci:
Hierarchical decomposition of dynamically evolving regulatory networks. BMC Bioinform. 16: 161:1-161:19 (2015) - [c2]Md Abdul Alim, Ahmet Ay, Md Mahmudul Hasan, My T. Thai, Tamer Kahveci:
Multiple reference networks improve accuracy of signaling network construction. BCB 2015: 176-185 - [c1]Qiyao Wang, Yuanfang Ren, Md Mahmudul Hasan, Ahmet Ay, Tamer Kahveci:
Construction of signaling networks with incomplete RNAi data. BIBM 2015: 157-162 - 2010
- [j1]Jacqueline M. Dresch, Xiaozhou Liu, David N. Arnosti, Ahmet Ay:
Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects. BMC Syst. Biol. 4: 142 (2010)
Coauthor Index
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