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ORCIDDominik Köppl
Person information
- affiliation: Münster University, Germany
- affiliation: Tokyo Medical and Dental University, Japan
- affiliation (former): Kyushu University, Japan
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Books and Theses
- 2018
[b1]Dominik Köppl
:
Exploring regular structures in strings. Dortmund University, Germany, 2018
Journal Articles
- 2024
- [j25]Hideo Bannai, Tomohiro I, Tomasz Kociumaka, Dominik Köppl, Simon J. Puglisi:
Computing Longest Lyndon Subsequences and Longest Common Lyndon Subsequences. Algorithmica 86(3): 735-756 (2024) - [j24]Aaron Hong, Marco Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie:
Pfp-fm: an accelerated FM-index. Algorithms Mol. Biol. 19(1): 15 (2024) - [j23]Jacqueline W. Daykin, Dominik Köppl, David Kübel, Florian Stober:
On arithmetically progressed suffix arrays and related Burrows-Wheeler transforms. Discret. Appl. Math. 355: 180-199 (2024) - [j22]Hideo Bannai, Juha Kärkkäinen, Dominik Köppl, Marcin Piatkowski:
Constructing and indexing the bijective and extended Burrows-Wheeler transform. Inf. Comput. 297: 105153 (2024) - 2023
- [j21]Davide Cozzi, Massimiliano Rossi, Simone Rubinacci, Travis Gagie, Dominik Köppl, Christina Boucher, Paola Bonizzoni:
μ- PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data. Bioinform. 39(9) (2023) - [j20]Szymon Grabowski, Dominik Köppl:
Space-efficient Huffman codes revisited. Inf. Process. Lett. 179: 106274 (2023) - [j19]Hideo Bannai, Tomohiro I, Dominik Köppl:
Longest bordered and periodic subsequences. Inf. Process. Lett. 182: 106398 (2023) - 2022
- [j18]Dominik Köppl, Simon J. Puglisi, Rajeev Raman:
Fast and Simple Compact Hashing via Bucketing. Algorithmica 84(9): 2735-2766 (2022) - [j17]Dominik Köppl:
Linking Off-Road Points to Routing Networks. Algorithms 15(5): 163 (2022) - [j16]Kazuya Tsuruta, Dominik Köppl, Shunsuke Kanda, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda:
c-trie++: A dynamic trie tailored for fast prefix searches. Inf. Comput. 285(Part): 104794 (2022) - [j15]Dominik Köppl:
Inferring Spatial Distance Rankings with Partial Knowledge on Routing Networks. Inf. 13(4): 168 (2022) - [j14]Paolo Ferragina, Giovanni Manzini, Travis Gagie, Dominik Köppl, Gonzalo Navarro, Manuel Striani, Francesco Tosoni:
Improving Matrix-vector Multiplication via Lossless Grammar-Compressed Matrices. Proc. VLDB Endow. 15(10): 2175-2187 (2022) - [j13]Alexandre P. Francisco, Travis Gagie, Dominik Köppl, Susana Ladra, Gonzalo Navarro:
Graph Compression for Adjacency-Matrix Multiplication. SN Comput. Sci. 3(3): 193 (2022) - [j12]Alexandre P. Francisco, Travis Gagie, Dominik Köppl, Susana Ladra, Gonzalo Navarro:
Correction to: Graph Compression for Adjacency-Matrix Multiplication. SN Comput. Sci. 3(3): 228 (2022) - 2021
- [j11]Dominik Köppl, Tomohiro I, Isamu Furuya, Yoshimasa Takabatake, Kensuke Sakai, Keisuke Goto:
Re-Pair in Small Space. Algorithms 14(1): 5 (2021) - [j10]Dominik Köppl:
Non-Overlapping LZ77 Factorization and LZ78 Substring Compression Queries with Suffix Trees. Algorithms 14(2): 44 (2021) - [j9]Dominik Köppl:
Reversed Lempel-Ziv Factorization with Suffix Trees. Algorithms 14(6): 161 (2021) - [j8]Diego Arroyuelo, Rodrigo Cánovas, Johannes Fischer, Dominik Köppl, Marvin Löbel, Gonzalo Navarro, Rajeev Raman:
Engineering Practical Lempel-Ziv Tries. ACM J. Exp. Algorithmics 26: 14:1-14:47 (2021) - 2020
- [j7]Roland Glück, Dominik Köppl:
Computational Aspects of Ordered Integer Partitions with Bounds. Algorithmica 82(10): 2955-2984 (2020) - [j6]Shunsuke Kanda, Dominik Köppl, Yasuo Tabei, Kazuhiro Morita, Masao Fuketa:
Dynamic Path-decomposed Tries. ACM J. Exp. Algorithmics 25: 1-28 (2020) - [j5]Johannes Fischer, Tomohiro I, Dominik Köppl:
Deterministic Sparse Suffix Sorting in the Restore Model. ACM Trans. Algorithms 16(4): 50:1-50:53 (2020) - [j4]Takuya Mieno, Dominik Köppl, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda:
Space-efficient algorithms for computing minimal/shortest unique substrings. Theor. Comput. Sci. 845: 230-242 (2020) - 2019
- [j3]Tomohiro I, Dominik Köppl:
Improved upper bounds on all maximal α-gapped repeats and palindromes. Theor. Comput. Sci. 753: 1-15 (2019) - 2018
- [j2]Johannes Fischer, Tomohiro I, Dominik Köppl, Kunihiko Sadakane:
Lempel-Ziv Factorization Powered by Space Efficient Suffix Trees. Algorithmica 80(7): 2048-2081 (2018) - [j1]Pawel Gawrychowski, Tomohiro I, Shunsuke Inenaga, Dominik Köppl, Florin Manea:
Tighter Bounds and Optimal Algorithms for All Maximal α-gapped Repeats and Palindromes - Finding All Maximal α-gapped Repeats and Palindromes in Optimal Worst Case Time on Integer Alphabets. Theory Comput. Syst. 62(1): 162-191 (2018)
Conference and Workshop Papers
- 2024
- [c49]Diptarama Hendrian, Dominik Köppl, Ryo Yoshinaka, Ayumi Shinohara:
Algorithms for Galois Words: Detection, Factorization, and Rotation. CPM 2024: 18:1-18:16 - [c48]Dominik Köppl:
Computing LZ78-Derivates with Suffix Trees. DCC 2024: 133-142 - [c47]Eric M. Osterkamp, Dominik Köppl:
Extending the Parameterized Burrows-Wheeler Transform. DCC 2024: 143-152 - [c46]Akiyoshi Kawamoto, Tomohiro I, Dominik Köppl, Hideo Bannai:
On the Hardness of Smallest RLSLPs and Collage Systems. DCC 2024: 243-252 - [c45]Kento Iseri, Tomohiro I, Diptarama Hendrian, Dominik Köppl, Ryo Yoshinaka, Ayumi Shinohara:
Breaking a Barrier in Constructing Compact Indexes for Parameterized Pattern Matching. ICALP 2024: 89:1-89:19 - [c44]Yuto Nakashima, Dominik Köppl, Mitsuru Funakoshi, Shunsuke Inenaga, Hideo Bannai:
Edit and Alphabet-Ordering Sensitivity of Lex-Parse. MFCS 2024: 75:1-75:15 - [c43]Golnaz Badkobeh, Hideo Bannai, Dominik Köppl:
Bijective BWT Based Compression Schemes. SPIRE 2024: 16-25 - [c42]Hiroki Shibata, Dominik Köppl:
LZ78 Substring Compression with CDAWGs. SPIRE 2024: 289-305 - 2023
- [c41]Dominik Köppl:
Encoding Hard String Problems with Answer Set Programming. CPM 2023: 17:1-17:21 - [c40]César Martínez-Guardiola, Nathaniel K. Brown, Fernando Silva-Coira, Dominik Köppl, Travis Gagie, Susana Ladra:
Augmented Thresholds for MONI. DCC 2023: 268-277 - [c39]Dominik Köppl, Florian Kurpicz, Daniel Meyer:
Faster Block Tree Construction. ESA 2023: 74:1-74:20 - [c38]Paola Bonizzoni, Christina Boucher, Davide Cozzi, Travis Gagie, Dominik Köppl, Massimiliano Rossi:
Data Structures for SMEM-Finding in the PBWT. SPIRE 2023: 89-101 - [c37]Nicola Cotumaccio, Travis Gagie, Dominik Köppl, Nicola Prezza:
Space-Time Trade-Offs for the LCP Array of Wheeler DFAs. SPIRE 2023: 143-156 - [c36]Aaron Hong, Marco Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie:
Acceleration of FM-Index Queries Through Prefix-Free Parsing. WABI 2023: 13:1-13:16 - 2022
- [c35]Jin Jie Deng, Wing-Kai Hon, Dominik Köppl, Kunihiko Sadakane:
FM-Indexing Grammars Induced by Suffix Sorting for Long Patterns. DCC 2022: 63-72 - [c34]Dominik Köppl, Gonzalo Navarro, Nicola Prezza:
HOLZ: High-Order Entropy Encoding of Lempel-Ziv Factor Distances. DCC 2022: 83-92 - [c33]Dominik Köppl:
Computing Lexicographic Parsings. DCC 2022: 232-241 - [c32]Hideo Bannai, Keisuke Goto, Masakazu Ishihata, Shunsuke Kanda, Dominik Köppl, Takaaki Nishimoto:
Computing NP-Hard Repetitiveness Measures via MAX-SAT. ESA 2022: 12:1-12:16 - [c31]Hideo Bannai, Tomohiro I, Tomasz Kociumaka, Dominik Köppl, Simon J. Puglisi:
Computing Longest (Common) Lyndon Subsequences. IWOCA 2022: 128-142 - [c30]Tomohiro I, Dominik Köppl:
Space-Efficient B Trees via Load-Balancing. IWOCA 2022: 327-340 - [c29]Daiki Hashimoto, Diptarama Hendrian, Dominik Köppl, Ryo Yoshinaka, Ayumi Shinohara:
Computing the Parameterized Burrows-Wheeler Transform Online. SPIRE 2022: 70-85 - [c28]Christina Boucher, Dominik Köppl, Herman Perera, Massimiliano Rossi:
Accessing the Suffix Array via φ -1-Forest. SPIRE 2022: 86-98 - 2021
- [c27]Hideo Bannai, Juha Kärkkäinen, Dominik Köppl, Marcin Piatkowski:
Constructing the Bijective and the Extended Burrows-Wheeler Transform in Linear Time. CPM 2021: 7:1-7:16 - [c26]Christina Boucher, Travis Gagie, Tomohiro I, Dominik Köppl, Ben Langmead, Giovanni Manzini, Gonzalo Navarro, Alejandro Pacheco, Massimiliano Rossi:
PHONI: Streamed Matching Statistics with Multi-Genome References. DCC 2021: 193-202 - [c25]Tooru Akagi, Dominik Köppl, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda:
Grammar Index by Induced Suffix Sorting. SPIRE 2021: 85-99 - [c24]Tomohiro I, Robert W. Irving, Dominik Köppl, Lorna Love:
Extracting the Sparse Longest Common Prefix Array from the Suffix Binary Search Tree. SPIRE 2021: 143-150 - [c23]Hideo Bannai, Mitsuru Funakoshi, Tomohiro I, Dominik Köppl, Takuya Mieno, Takaaki Nishimoto:
A Separation of γ and b via Thue-Morse Words. SPIRE 2021: 167-178 - 2020
- [c22]Dominik Köppl, Daiki Hashimoto, Diptarama Hendrian, Ayumi Shinohara:
In-Place Bijective Burrows-Wheeler Transforms. CPM 2020: 21:1-21:15 - [c21]Kazuya Tsuruta, Dominik Köppl, Shunsuke Kanda, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda:
c-Trie++: A Dynamic Trie Tailored for Fast Prefix Searches. DCC 2020: 243-252 - [c20]Dominik Köppl, Tomohiro I, Isamu Furuya, Yoshimasa Takabatake, Kensuke Sakai, Keisuke Goto:
Re-Pair in Small Space. DCC 2020: 377 - [c19]Jacqueline W. Daykin, Dominik Köppl, David Kübel, Florian Stober:
On Arithmetically Progressed Suffix Arrays. Stringology 2020: 96-110 - [c18]Dominik Köppl, Tomohiro I, Isamu Furuya, Yoshimasa Takabatake, Kensuke Sakai, Keisuke Goto:
Re-Pair in Small Space. Stringology 2020: 134-147 - [c17]Dominik Köppl, Simon J. Puglisi, Rajeev Raman:
Fast and Simple Compact Hashing via Bucketing. SEA 2020: 7:1-7:14 - 2019
- [c16]Hideo Bannai, Juha Kärkkäinen, Dominik Köppl, Marcin Piatkowski:
Indexing the Bijective BWT. CPM 2019: 17:1-17:14 - [c15]Patrick Dinklage, Jonas Ellert, Johannes Fischer, Dominik Köppl, Manuel Penschuck:
Bidirectional Text Compression in External Memory. ESA 2019: 41:1-41:16 - [c14]Takuya Mieno, Dominik Köppl, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda:
Compact Data Structures for Shortest Unique Substring Queries. SPIRE 2019: 107-123 - 2017
- [c13]Hideo Bannai, Shunsuke Inenaga, Dominik Köppl:
Computing All Distinct Squares in Linear Time for Integer Alphabets. CPM 2017: 22:1-22:18 - [c12]Johannes Fischer, Dominik Köppl:
Practical Evaluation of Lempel-Ziv-78 and Lempel-Ziv-Welch Tries. SPIRE 2017: 191-207 - [c11]Patrick Dinklage, Johannes Fischer, Dominik Köppl, Marvin Löbel, Kunihiko Sadakane:
Compression with the tudocomp Framework. SEA 2017: 13:1-13:22 - 2016
- [c10]Johannes Fischer, Dominik Köppl, Florian Kurpicz:
On the Benefit of Merging Suffix Array Intervals for Parallel Pattern Matching. CPM 2016: 26:1-26:11 - [c9]Dominik Köppl, Kunihiko Sadakane:
Lempel-Ziv Computation in Compressed Space (LZ-CICS). DCC 2016: 3-12 - [c8]Johannes Fischer, Tomohiro I, Dominik Köppl:
Deterministic Sparse Suffix Sorting on Rewritable Texts. LATIN 2016: 483-496 - [c7]Pawel Gawrychowski, Tomohiro I, Shunsuke Inenaga, Dominik Köppl, Florin Manea:
Efficiently Finding All Maximal alpha-gapped Repeats. STACS 2016: 39:1-39:14 - 2015
- [c6]Don S. Batory, Peter Höfner, Dominik Köppl, Bernhard Möller, Andreas Zelend:
Structured Document Algebra in Action. Software, Services, and Systems 2015: 291-311 - [c5]Johannes Fischer, Tomohiro I, Dominik Köppl:
Lempel Ziv Computation in Small Space (LZ-CISS). CPM 2015: 172-184 - [c4]Dominik Köppl, Tomohiro I:
Arithmetics on Suffix Arrays of Fibonacci Words. WORDS 2015: 135-146 - 2013
- [c3]Dominik Köppl:
Breaking skyline computation down to the metal: the skyline breaker algorithm. IDEAS 2013: 132-141 - [c2]Florian Wenzel, Dominik Köppl, Werner Kießling:
Interactive Toolbox for Spatial-Textual Preference Queries. SSTD 2013: 462-466 - [c1]Roland Glück, Dominik Köppl, Günther Wirsching:
Computational Aspects of Ordered Integer Partition with Upper Bounds. SEA 2013: 79-90
Informal and Other Publications
- 2024
- [i39]Yuto Nakashima, Dominik Köppl, Mitsuru Funakoshi, Shunsuke Inenaga, Hideo Bannai:
Edit and Alphabet-Ordering Sensitivity of Lex-parse. CoRR abs/2402.19223 (2024) - [i38]Diptarama Hendrian, Dominik Köppl, Ryo Yoshinaka, Ayumi Shinohara:
Algorithms for Galois Words: Detection, Factorization, and Rotation. CoRR abs/2403.02636 (2024) - [i37]Hideo Bannai, Keisuke Goto, Shunsuke Kanda, Dominik Köppl:
NP-Completeness for the Space-Optimality of Double-Array Tries. CoRR abs/2403.04951 (2024) - [i36]Golnaz Badkobeh, Hideo Bannai, Dominik Köppl:
Bijective BWT based compression schemes. CoRR abs/2406.16475 (2024) - 2023
- [i35]Aaron Hong, Marco Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie:
Acceleration of FM-index Queries Through Prefix-free Parsing. CoRR abs/2305.05893 (2023) - [i34]Nicola Cotumaccio, Travis Gagie, Dominik Köppl, Nicola Prezza:
Space-time Trade-offs for the LCP Array of Wheeler DFAs. CoRR abs/2306.05684 (2023) - [i33]Kento Iseri, Tomohiro I, Diptarama Hendrian, Dominik Köppl, Ryo Yoshinaka, Ayumi Shinohara:
Breaking a Barrier in Constructing Compact Indexes for Parameterized Pattern Matching. CoRR abs/2308.05977 (2023) - 2022
- [i32]Hideo Bannai, Tomohiro I, Tomasz Kociumaka, Dominik Köppl, Simon J. Puglisi:
Computing Longest (Common) Lyndon Subsequences. CoRR abs/2201.06773 (2022) - [i31]Hideo Bannai, Tomohiro I, Dominik Köppl:
Longest (Sub-)Periodic Subsequence. CoRR abs/2202.07189 (2022) - [i30]Paolo Ferragina, Travis Gagie, Dominik Köppl, Giovanni Manzini, Gonzalo Navarro, Manuel Striani, Francesco Tosoni:
Improving Matrix-vector Multiplication via Lossless Grammar-Compressed Matrices. CoRR abs/2203.14540 (2022) - [i29]Daiki Hashimoto, Diptarama Hendrian, Dominik Köppl, Ryo Yoshinaka, Ayumi Shinohara:
Computing the Parameterized Burrows-Wheeler Transform Online. CoRR abs/2206.15100 (2022) - [i28]Hideo Bannai, Keisuke Goto, Masakazu Ishihata, Shunsuke Kanda, Dominik Köppl, Takaaki Nishimoto:
Computing NP-hard Repetitiveness Measures via MAX-SAT. CoRR abs/2207.02571 (2022) - [i27]César Martínez-Guardiola, Nathaniel K. Brown, Fernando Silva-Coira, Dominik Köppl, Travis Gagie, Susana Ladra:
Augmented Thresholds for MONI. CoRR abs/2211.07794 (2022) - 2021
- [i26]Tomohiro I, Dominik Köppl:
Load-Balancing Succinct B Trees. CoRR abs/2104.08751 (2021) - [i25]Hideo Bannai, Mitsuru Funakoshi, Tomohiro I, Dominik Köppl, Takuya Mieno, Takaaki Nishimoto:
A Separation of γ and b via Thue-Morse Words. CoRR abs/2104.09985 (2021) - [i24]Tooru Akagi, Dominik Köppl, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda:
Grammar Index By Induced Suffix Sorting. CoRR abs/2105.13744 (2021) - [i23]Jacqueline W. Daykin, Dominik Köppl, David Kübel, Florian Stober:
On Arithmetically Progressed Suffix Arrays and related Burrows-Wheeler Transforms. CoRR abs/2107.02503 (2021) - [i22]Szymon Grabowski, Dominik Köppl:
Space-Efficient Huffman Codes Revisited. CoRR abs/2108.05495 (2021) - [i21]Jin Jie Deng, Wing-Kai Hon, Dominik Köppl, Kunihiko Sadakane:
FM-Indexing Grammars Induced by Suffix Sorting for Long Patterns. CoRR abs/2110.01181 (2021) - [i20]Dominik Köppl, Gonzalo Navarro, Nicola Prezza:
HOLZ: High-Order Entropy Encoding of Lempel-Ziv Factor Distances. CoRR abs/2111.02478 (2021) - 2020
- [i19]Kazuya Tsuruta, Dominik Köppl, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda:
Grammar-compressed Self-index with Lyndon Words. CoRR abs/2004.05309 (2020) - [i18]Dominik Köppl, Daiki Hashimoto, Diptarama Hendrian, Ayumi Shinohara:
In-Place Bijective Burrows-Wheeler Transforms. CoRR abs/2004.12590 (2020) - [i17]Christina Boucher, Travis Gagie, Tomohiro I, Dominik Köppl, Ben Langmead, Giovanni Manzini, Gonzalo Navarro, Alejandro Pacheco, Massimiliano Rossi:
PHONI: Streamed Matching Statistics with Multi-Genome References. CoRR abs/2011.05610 (2020) - 2019
- [i16]Kazuya Tsuruta, Dominik Köppl, Shunsuke Kanda, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda:
Dynamic Packed Compact Tries Revisited. CoRR abs/1904.07467 (2019) - [i15]Dominik Köppl:
Separate Chaining Meets Compact Hashing. CoRR abs/1905.00163 (2019) - [i14]Takuya Mieno, Dominik Köppl, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda:
Compact Data Structures for Shortest Unique Substring Queries. CoRR abs/1905.12854 (2019) - [i13]Shunsuke Kanda, Dominik Köppl, Yasuo Tabei, Kazuhiro Morita, Masao Fuketa:
Dynamic Path-Decomposed Tries. CoRR abs/1906.06015 (2019) - [i12]Patrick Dinklage, Jonas Ellert, Johannes Fischer, Dominik Köppl, Manuel Penschuck:
Bidirectional Text Compression in External Memory. CoRR abs/1907.03235 (2019) - [i11]Dominik Köppl, Tomohiro I, Isamu Furuya, Yoshimasa Takabatake, Kensuke Sakai, Keisuke Goto:
Re-Pair In-Place. CoRR abs/1908.04933 (2019) - [i10]Hideo Bannai, Juha Kärkkäinen, Dominik Köppl, Marcin Piatkowski:
Constructing the Bijective BWT. CoRR abs/1911.06985 (2019) - 2018
- [i9]Tomohiro I, Dominik Köppl:
Improved Upper Bounds on all Maximal α-gapped Repeats and Palindromes. CoRR abs/1802.10355 (2018) - 2017
- [i8]Patrick Dinklage, Johannes Fischer, Dominik Köppl, Marvin Löbel, Kunihiko Sadakane:
Compression with the tudocomp Framework. CoRR abs/1702.07577 (2017) - [i7]Johannes Fischer, Dominik Köppl:
Practical Evaluation of Lempel-Ziv-78 and Lempel-Ziv-Welch Tries. CoRR abs/1706.03035 (2017) - 2016
- [i6]Johannes Fischer, Dominik Köppl, Florian Kurpicz:
On the Benefit of Merging Suffix Array Intervals for Parallel Pattern Matching. CoRR abs/1606.02465 (2016) - [i5]Hideo Bannai, Shunsuke Inenaga, Dominik Köppl:
Computing All Distinct Squares in Linear Time for Integer Alphabets. CoRR abs/1610.03421 (2016) - 2015
- [i4]Johannes Fischer, Tomohiro I, Dominik Köppl:
Lempel Ziv Computation In Small Space (LZ-CISS). CoRR abs/1504.02605 (2015) - [i3]Johannes Fischer, Tomohiro I, Dominik Köppl:
Deterministic Sparse Suffix Sorting on Rewritable Texts. CoRR abs/1509.07417 (2015) - [i2]Pawel Gawrychowski, Tomohiro I, Shunsuke Inenaga, Dominik Köppl, Florin Manea:
Efficiently Finding All Maximal $α$-gapped Repeats. CoRR abs/1509.09237 (2015) - [i1]Dominik Köppl, Kunihiko Sadakane:
Lempel Ziv Computation In Compressed Space (LZ-CICS). CoRR abs/1510.02882 (2015)
Coauthor Index
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