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2020 – today
- 2021
[j14]Alex Tank, Xiudi Li, Emily B. Fox, Ali Shojaie:
The Convex Mixture Distribution: Granger Causality for Categorical Time Series. SIAM J. Math. Data Sci. 3(1): 83-112 (2021)- 2020
- [c5]Lina Lin, Mathias Drton, Ali Shojaie:
Statistical Significance in High-dimensional Linear Mixed Models. FODS 2020: 171-181 - [i7]Ali Shojaie:
Differential Network Analysis: A Statistical Perspective. CoRR abs/2003.04235 (2020) - [i6]Simge Küçükyavuz, Ali Shojaie, Hasan Manzour, Linchuan Wei:
Consistent Second-Order Conic Integer Programming for Learning Bayesian Networks. CoRR abs/2005.14346 (2020) - [i5]Xu Wang, Mladen Kolar, Ali Shojaie:
Statistical Inference for Networks of High-Dimensional Point Processes. CoRR abs/2007.07448 (2020)
2010 – 2019
- 2019
- [j13]Jing Ma
, Ali Shojaie, George Michailidis:
A comparative study of topology-based pathway enrichment analysis methods. BMC Bioinform. 20(1): 546:1-546:14 (2019) - [j12]Xia Wang, Ali Shojaie, Jian Zou:
Bayesian hidden Markov models for dependent large-scale multiple testing. Comput. Stat. Data Anal. 136: 123-136 (2019) - [j11]Shiqing Yu, Mathias Drton, Ali Shojaie:
Generalized Score Matching for Non-Negative Data. J. Mach. Learn. Res. 20: 76:1-76:70 (2019) - [j10]Arjun Sondhi, Ali Shojaie:
The Reduced PC-Algorithm: Improved Causal Structure Learning in Large Random Networks. J. Mach. Learn. Res. 20: 164:1-164:31 (2019) - [i4]Asad Haris, Noah Simon, Ali Shojaie:
Wavelet regression and additive models for irregularly spaced data. CoRR abs/1903.04631 (2019) - [i3]Hasan Manzour, Simge Küçükyavuz, Ali Shojaie:
Integer Programming for Learning Directed Acyclic Graphs from Continuous Data. CoRR abs/1904.10574 (2019) - 2018
- [j9]Ravi Mathur, Daniel M. Rotroff, Jun Ma, Ali Shojaie, Alison A. Motsinger-Reif:
Gene set analysis methods: a systematic comparison. BioData Min. 11(1): 8:1-8:19 (2018) - [j8]Nafiseh Sedaghat, Mahmood Fathy, Mohammad Hossein Modarressi, Ali Shojaie:
Combining Supervised and Unsupervised Learning for Improved miRNA Target Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 15(5): 1594-1604 (2018) - [c4]Shiqing Yu, Mathias Drton, Ali Shojaie:
Graphical Models for Non-Negative Data Using Generalized Score Matching. AISTATS 2018: 1781-1790 - [c3]Asad Haris, Ali Shojaie, Noah Simon:
Wavelet regression and additive models for irregularly spaced data. NeurIPS 2018: 8987-8997 - [i2]Arjun Sondhi, Ali Shojaie:
The Reduced PC-Algorithm: Improved Causal Structure Learning in Large Random Networks. CoRR abs/1806.06209 (2018) - [i1]Shiqing Yu, Mathias Drton, Ali Shojaie:
Generalized Score Matching for Non-Negative Data. CoRR abs/1812.10551 (2018) - 2016
- [j7]Jing Ma, Ali Shojaie, George Michailidis:
Network-based pathway enrichment analysis with incomplete network information. Bioinform. 32(20): 3165-3174 (2016) - [c2]Arjun Sondhi, Ali Shojaie:
Causal Structure Learning with Reduced Partial Correlation Thresholding. DSAA 2016: 790-797 - 2015
- [j6]Kean Ming Tan, Daniela M. Witten, Ali Shojaie:
The cluster graphical lasso for improved estimation of Gaussian graphical models. Comput. Stat. Data Anal. 85: 23-36 (2015) - [j5]Sumanta Basu, Ali Shojaie, George Michailidis:
Network granger causality with inherent grouping structure. J. Mach. Learn. Res. 16: 417-453 (2015) - 2014
- [j4]Daniela M. Witten, Ali Shojaie, Fan Zhang:
The Cluster Elastic Net for High-Dimensional Regression With Unknown Variable Grouping. Technometrics 56(1): 112-122 (2014) - 2013
- [j3]Deanna Petrochilos, Ali Shojaie, John H. Gennari, Neil F. Abernethy:
Using random walks to identify cancer-associated modules in expression data. BioData Min. 6: 17 (2013) - 2010
- [j2]Ali Shojaie, George Michailidis:
Discovering graphical Granger causality using the truncating lasso penalty. Bioinform. 26(18) (2010) - [c1]Ali Shojaie, George Michailidis:
Penalized Principal Component Regression on Graphs for Analysis of Subnetworks. NIPS 2010: 2155-2163
2000 – 2009
- 2009
- [j1]Ali Shojaie, George Michailidis:
Analysis of Gene Sets Based on the Underlying Regulatory Network. J. Comput. Biol. 16(3): 407-426 (2009)
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