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Mohamed Abouelhoda
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Journal Articles
- 2021
- [j9]Seif Eldawlatly, Mohamed Abouelhoda, Omar Sultan Al-Kadi, Takashi Gojobori, Boris R. Jankovic
, Mohamad Khalil, Ahsan H. Khandoker, Ahmed Morsy:
Biomedical computing in the Arab world: unlocking the potential of a growing research community. Commun. ACM 64(4): 108-113 (2021) - 2020
- [j8]Moustafa Shokrof, Mohamed Abouelhoda
:
IonCRAM: a reference-based compression tool for ion torrent sequence files. BMC Bioinform. 21(1): 397 (2020) - [j7]Moustafa Shokrof, Mohamed Abouelhoda
:
Correction to: IonCRAM: a reference-based compression tool for ion torrent sequence files. BMC Bioinform. 21(1): 435 (2020) - 2017
- [j6]Hatem Elshazly
, Yassine Souilmi
, Peter J. Tonellato, Dennis P. Wall, Mohamed Abouelhoda:
MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants. BMC Bioinform. 18(1): 49:1-49:14 (2017) - 2014
- [j5]Mostafa M. Abbas, Hazem M. Bahig, Mohamed Abouelhoda, Mustafa M. Mohie-Eldin:
Parallelizing exact motif finding algorithms on multi-core. J. Supercomput. 69(2): 814-826 (2014) - 2013
- [j4]Mohamed Abouelhoda, Shadi Issa
, Moustafa Ghanem:
Towards Scalable and Cost-aware Bioinformatics Workflow Execution in the Cloud - Recent Advances to the Tavaxy Workflow System. Fundam. Informaticae 128(3): 255-280 (2013) - 2012
- [j3]Mohamed Abouelhoda
, Shadi Issa
, Moustafa Ghanem
:
Tavaxy: Integrating Taverna and Galaxy workflows with cloud computing support. BMC Bioinform. 13: 77 (2012) - [j2]Mostafa M. Abbas, Mohamed Abouelhoda
, Hazem M. Bahig:
A hybrid method for the exact planted (l, d) motif finding problem and its parallelization. BMC Bioinform. 13(S-17): S10 (2012) - [j1]Mohamed El-Kalioby
, Mohamed Abouelhoda
, Jan Krüger, Robert Giegerich, Alexander Sczyrba
, Dennis P. Wall, Peter J. Tonellato:
Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package. BMC Bioinform. 13(S-17): S22 (2012)
Conference and Workshop Papers
- 2019
- [c8]Zeeshan Ali Shah, Ashiq Anjum, Mohamed Abouelhoda:
Modelling Genomics Datasets to Optimize Its Usage Patterns for Efficient Analytics. ICAAI 2019: 135-140 - 2018
- [c7]Zeeshan Ali Shah, Mohamed El-Kalioby, Tariq Faquih, Moustafa Shokrof, Shazia Subhani, Yasser Alnakhli, Hussain Aljafar, Ashiq Anjum
, Mohamed Abouelhoda:
Exploiting In-memory Systems for Genomic Data Analysis. IWBBIO (1) 2018: 405-414 - 2017
- [c6]Gaurav Kaul
, Zeeshan Ali Shah, Mohamed Abouelhoda:
A High Performance Storage Appliance for Genomic Data. IWBBIO (2) 2017: 480-488 - 2016
- [c5]Ahmed Abdullah Ali, Mohamed El-Kalioby, Mohamed Abouelhoda:
The Case for Docker in Multicloud Enabled Bioinformatics Applications. IWBBIO 2016: 587-601 - 2015
- [c4]Ahmed Abdullah Ali, Mohamed El-Kalioby, Mohamed Abouelhoda:
Supporting Bioinformatics Applications with Hybrid Multi-cloud Services. IWBBIO (1) 2015: 415-425 - 2014
- [c3]Anas Abu-Doleh, Kamer Kaya, Mohamed Abouelhoda, Ümit V. Çatalyürek:
Extracting Maximal Exact Matches on GPU. IPDPS Workshops 2014: 1417-1426 - 2013
- [c2]Amro Ahmed, Mohamed Abouelhoda, Ayman M. Khalifa
, Ahmed S. Fahmy:
Estimation of the myocardium rotation from standard cine Magnetic Resonance Imaging sequences. ICASSP 2013: 1023-1026 - 2012
- [c1]Mohamed Abouelhoda, Sondos Seif:
Efficient Distributed Computation of Maximal Exact Matches. EuroMPI 2012: 214-223
Parts in Books or Collections
- 2010
- [p1]Mohamed Abouelhoda, Moustafa Ghanem
:
String Mining in Bioinformatics. Scientific Data Mining and Knowledge Discovery 2010: 207-247
Coauthor Index
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