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Journal Articles
- 2013
[j9]Patrick B. F. O'Connor, Gene-Wei Li, Jonathan S. Weissman
, John F. Atkins, Pavel V. Baranov:
rRNA: mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments. Bioinform. 29(12): 1488-1491 (2013)- 2010
- [j8]Michaël Bekaert, Andrew E. Firth, Yan Zhang, Vadim N. Gladyshev, John F. Atkins, Pavel V. Baranov:
Recode-2: new design, new search tools, and many more genes. Nucleic Acids Res. 38(Database-Issue): 69-74 (2010) - 2008
- [j7]Michaël Bekaert, Ivaylo P. Ivanov, John F. Atkins, Pavel V. Baranov:
Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinform. 9 (2008) - 2006
- [j6]Michaël Bekaert, John F. Atkins, Pavel V. Baranov:
ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinform. 22(20): 2463-2465 (2006) - 2004
- [j5]Olga V. Matveeva, Brian T. Foley, Vladimir A. Nemtsov, Raymond F. Gesteland, Senya Matsufuji, John F. Atkins, Aleksey Y. Ogurtsov, Svetlana A. Shabalina:
Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome. BMC Bioinform. 5: 44 (2004) - 2003
- [j4]Pavel V. Baranov, Olga L. Gurvich, Andrew W. Hammer, Raymond F. Gesteland, John F. Atkins:
RECODE 2003. Nucleic Acids Res. 31(1): 87-89 (2003) - 2002
- [j3]Atul A. Shah, Michael C. Giddings, Jasmin B. Parvaz, Raymond F. Gesteland, John F. Atkins, Ivaylo P. Ivanov:
Computational identification of putative programmed translational frameshift sites. Bioinform. 18(8): 1046-1053 (2002) - 2001
- [j2]Pavel V. Baranov, Olga L. Gurvich, Olivier Fayet, Marie Françoise Prère, W. Allen Miller, Raymond F. Gesteland, John F. Atkins, Michael C. Giddings:
RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression. Nucleic Acids Res. 29(1): 264-267 (2001) - 2000
- [j1]Michael C. Giddings, Olga V. Matveeva, John F. Atkins, Raymond F. Gesteland:
ODNBase-a web database for antisense oligonucleotide effectiveness studies. Bioinform. 16(9): 843-844 (2000)
Coauthor Index
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