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Sophie Barbe
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2020 – today
- 2023
- [c7]Marianne Defresne, Sophie Barbe, Thomas Schiex:
Scalable Coupling of Deep Learning with Logical Reasoning. IJCAI 2023: 3615-3623 - [i1]Marianne Defresne, Sophie Barbe, Thomas Schiex:
Scalable Coupling of Deep Learning with Logical Reasoning. CoRR abs/2305.07617 (2023) - 2021
- [j10]Manon Ruffini, Jelena Vucinic
, Simon de Givry, George Katsirelos
, Sophie Barbe
, Thomas Schiex
:
Guaranteed Diversity and Optimality in Cost Function Network Based Computational Protein Design Methods. Algorithms 14(6): 168 (2021) - 2020
- [j9]Jelena Vucinic
, David Simoncini, Manon Ruffini, Sophie Barbe
, Thomas Schiex:
Positive multistate protein design. Bioinform. 36(1): 122-130 (2020)
2010 – 2019
- 2019
- [j8]David Simoncini, Kam Y. J. Zhang, Thomas Schiex, Sophie Barbe
:
A structural homology approach for computational protein design with flexible backbone. Bioinform. 35(14): 2418-2426 (2019) - [j7]Antoine Charpentier, David Mignon, Sophie Barbe
, Juan Cortés
, Thomas Schiex
, Thomas Simonson
, David Allouche
:
Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems. J. Chem. Inf. Model. 59(1): 127-136 (2019) - [c6]Manon Ruffini, Jelena Vucinic, Simon de Givry, George Katsirelos, Sophie Barbe
, Thomas Schiex:
Guaranteed Diversity & Quality for the Weighted CSP. ICTAI 2019: 18-25 - 2018
- [j6]Clément Viricel, Simon de Givry, Thomas Schiex, Sophie Barbe
:
Cost function network-based design of protein-protein interactions: predicting changes in binding affinity. Bioinform. 34(15): 2581-2589 (2018) - [c5]David Simoncini, Sophie Barbe
, Thomas Schiex, Sébastien Vérel:
Fitness landscape analysis around the optimum in computational protein design. GECCO 2018: 355-362 - 2016
- [j5]Seydou Traoré, Kyle E. Roberts, David Allouche, Bruce Randall Donald, Isabelle André, Thomas Schiex, Sophie Barbe
:
Fast search algorithms for computational protein design. J. Comput. Chem. 37(12): 1048-1058 (2016) - [c4]Clément Viricel, David Simoncini, Sophie Barbe
, Thomas Schiex:
Guaranteed Weighted Counting for Affinity Computation: Beyond Determinism and Structure. CP 2016: 733-750 - 2015
- [c3]Clément Viricel, David Simoncini, David Allouche, Simon de Givry, Sophie Barbe
, Thomas Schiex:
Approximate Counting with Deterministic Guarantees for Affinity Computation. MCO (2) 2015: 165-176 - 2014
- [j4]David Allouche, Isabelle André, Sophie Barbe
, Jessica Davies, Simon de Givry
, George Katsirelos, Barry O'Sullivan
, Steven D. Prestwich, Thomas Schiex, Seydou Traoré:
Computational protein design as an optimization problem. Artif. Intell. 212: 59-79 (2014) - 2013
- [j3]Seydou Traoré, David Allouche, Isabelle André, Simon de Givry, George Katsirelos, Thomas Schiex, Sophie Barbe
:
A new framework for computational protein design through cost function network optimization. Bioinform. 29(17): 2129-2136 (2013) - 2012
- [c2]David Allouche, Seydou Traoré, Isabelle André, Simon de Givry, George Katsirelos, Sophie Barbe
, Thomas Schiex:
Computational Protein Design as a Cost Function Network Optimization Problem. CP 2012: 840-849 - 2011
- [j2]Juan Cortés, Sophie Barbe
, Monique Erard, Thierry Siméon
:
Encoding Molecular Motions in Voxel Maps. IEEE ACM Trans. Comput. Biol. Bioinform. 8(2): 557-563 (2011)
2000 – 2009
- 2009
- [c1]Juan Cortés, Sophie Barbe
, Monique Erard, Thierry Siméon:
Encoding molecular motions in voxel maps. ICRA 2009: 2550-2555 - 2008
- [j1]Sophie Barbe
, Marc Le Bret:
Ab initio determination of the flexibility of 2'-aminoribonucleosides and 2'-aminoarabinonucleosides inserted in duplexes. J. Comput. Chem. 29(9): 1353-1363 (2008)
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