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ORCIDStephan Saalfeld
Person information
- affiliation: Janelia Research Campus, VA, USA
- affiliation: Howard Hughes Medical Institute, Ashburn, VA, USA
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2010 – 2019
- 2019
[j9]Jan Funke
, Fabian Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga:
Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction. IEEE Trans. Pattern Anal. Mach. Intell. 41(7): 1669-1680 (2019)- 2018
- [c6]Jan Funke, Chong Zhang, Tobias Pietzsch, Miguel Ángel González Ballester, Stephan Saalfeld:
The candidate multi-cut for cell segmentation. ISBI 2018: 649-653 - [c5]Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld:
Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain. MICCAI (2) 2018: 317-325 - [i9]Khaled Khairy, Gennady Denisov, Stephan Saalfeld:
Joint Deformable Registration of Large EM Image Volumes: A Matrix Solver Approach. CoRR abs/1804.10019 (2018) - [i8]Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld:
Synaptic Cleft Segmentation in Non-Isotropic Volume Electron Microscopy of the Complete Drosophila Brain. CoRR abs/1805.02718 (2018) - 2017
- [j8]Philipp Hanslovsky, John A. Bogovic, Stephan Saalfeld:
Image-based correction of continuous and discontinuous non-planar axial distortion in serial section microscopy. Bioinform. 33(9): 1379-1386 (2017) - [j7]Corinna Blasse, Stephan Saalfeld, Raphaël Etournay, Andreas Sagner, Suzanne Eaton, Eugene W. Myers:
PreMosa: extracting 2D surfaces from 3D microscopy mosaics. Bioinform. 33(16): 2563-2569 (2017) - [j6]David Grant Colburn Hildebrand, Marcelo Cicconet, Russel Miguel Torres, Woohyuk Choi, Tran Minh Quan, Jungmin Moon, Arthur W. Wetzel, Andrew Scott Champion, Brett J. Graham, Owen Randlett, George S. Plummer, Ruben Portugues, Isaac Henry Bianco, Stephan Saalfeld, Alexander D. Baden, Kunal Lillaney, Randal C. Burns, Joshua T. Vogelstein, Alexander Schier, Wei-Chung Allen Lee, Won-Ki Jeong, Jeff William Lichtman, Florian Engert:
Whole-brain serial-section electron microscopy in larval zebrafish. Nat. 545(7654): 345-349 (2017) - [c4]Larissa Heinrich, John A. Bogovic, Stephan Saalfeld:
Deep Learning for Isotropic Super-Resolution from Non-isotropic 3D Electron Microscopy. MICCAI (2) 2017: 135-143 - [i7]Larissa Heinrich, John A. Bogovic, Stephan Saalfeld:
Deep Learning for Isotropic Super-Resolution from Non-Isotropic 3D Electron Microscopy. CoRR abs/1706.03142 (2017) - [i6]Jan Funke, Chong Zhang, Tobias Pietzsch, Stephan Saalfeld:
The Candidate Multi-Cut for Cell Segmentation. CoRR abs/1707.00907 (2017) - [i5]Jan Funke, Fabian Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga:
A Deep Structured Learning Approach Towards Automating Connectome Reconstruction from 3D Electron Micrographs. CoRR abs/1709.02974 (2017) - 2016
- [c3]John A. Bogovic, Philipp Hanslovsky, Allan Wong, Stephan Saalfeld:
Robust registration of calcium images by learned contrast synthesis. ISBI 2016: 1123-1126 - 2015
- [c2]Philipp Hanslovsky, John A. Bogovic, Stephan Saalfeld:
Post-acquisition image based compensation for thickness variation in microscopy section series. ISBI 2015: 507-511 - [i4]John A. Bogovic, Philipp Hanslovsky, Allan Wong, Stephan Saalfeld:
Robust Registration of Calcium Images by Learned Contrast Synthesis. CoRR abs/1511.01154 (2015) - [i3]Philipp Hanslovsky, John A. Bogovic, C. Shan Xu, Kenneth J. Hayworth, Zhiyuan Lu, Harald F. Hess, Stephan Saalfeld:
Image based compensation for thickness variation in microscopy section series. CoRR abs/1511.01161 (2015) - 2014
- [i2]Philipp Hanslovsky, John A. Bogovic, Stephan Saalfeld:
Post-acquisition image based compensation for thickness variation in microscopy section series. CoRR abs/1411.6970 (2014) - [i1]Tobias Pietzsch, Stephan Saalfeld, Stephan Preibisch, Pavel Tomancak:
BigDataViewer: Interactive Visualization and Image Processing for Terabyte Data Sets. CoRR abs/1412.0488 (2014) - 2013
- [j5]Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak, Stephan Saalfeld:
ImgLib2 - generic image processing in Java. Bioinform. 29(2): 298 (2013) - 2012
- [j4]Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak, Stephan Saalfeld:
ImgLib2 - generic image processing in Java. Bioinform. 28(22): 3009-3011 (2012) - 2010
- [j3]Stephan Saalfeld, Albert Cardona, Volker Hartenstein, Pavel Tomancak:
As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets. Bioinform. 26(12): 57-63 (2010)
2000 – 2009
- 2009
- [j2]Stephan Preibisch, Stephan Saalfeld, Pavel Tomancak:
Globally optimal stitching of tiled 3D microscopic image acquisitions. Bioinform. 25(11): 1463-1465 (2009) - [j1]Stephan Saalfeld, Albert Cardona, Volker Hartenstein, Pavel Tomancak:
CATMAID: collaborative annotation toolkit for massive amounts of image data. Bioinform. 25(15): 1984-1986 (2009) - [c1]Stephan Preibisch, Stephan Saalfeld, Torsten Rohlfing, Pavel Tomancak:
Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching. Medical Imaging: Image Processing 2009: 72592S
Coauthor Index
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