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ORCIDXiaoqin Zou
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- affiliation: University of Missouri, Columbia, MO, USA
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Journal Articles
- 2024
[j20]Zhiwei Ma, Abeeb Ajibade, Xiaoqin Zou:
Docking strategies for predicting protein-ligand interactions and their application to structure-based drug design. Commun. Inf. Syst. 24(3): 199-230 (2024)- 2022
- [j19]Xianjin Xu
, Xiaoqin Zou:
Predicting Protein-Peptide Complex Structures by Accounting for Peptide Flexibility and the Physicochemical Environment. J. Chem. Inf. Model. 62(1): 27-39 (2022) - 2021
- [j18]Shuang Zhang, Kyle Yu Chen, Xiaoqin Zou:
Carbohydrate-protein interactions: advances and challenges. Commun. Inf. Syst. 21(1): 147-163 (2021) - 2020
- [j17]Liming Qiu, Xiaoqin Zou:
Scoring functions for protein-RNA complex structure prediction: advances, applications, and future directions. Commun. Inf. Syst. 20(1): 1-22 (2020) - [j16]Xianjin Xu, Xiaoqin Zou:
PepPro: A Nonredundant Structure Data Set for Benchmarking Peptide-Protein Computational Docking. J. Comput. Chem. 41(4): 362-369 (2020) - 2019
- [j15]Xianjin Xu, Zhiwei Ma, Rui Duan, Xiaoqin Zou:
Predicting protein-ligand binding modes for CELPP and GC3: workflows and insight. J. Comput. Aided Mol. Des. 33(3): 367-374 (2019) - 2018
- [j14]Rui Duan, Xianjin Xu, Xiaoqin Zou:
Lessons learned from participating in D3R 2016 Grand Challenge 2: compounds targeting the farnesoid X receptor. J. Comput. Aided Mol. Des. 32(1): 103-111 (2018) - [j13]Xianjin Xu, Chengfei Yan, Xiaoqin Zou:
MDockPeP: An ab-initio protein-peptide docking server. J. Comput. Chem. 39(28): 2409-2413 (2018) - 2017
- [j12]Xianjin Xu, Chengfei Yan, Xiaoqin Zou:
Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015. J. Comput. Aided Mol. Des. 31(8): 689-699 (2017) - 2016
- [j11]Xianjin Xu, Zhiwei Ma, Hongmin Sun, Xiaoqin Zou:
SM-TF: A structural database of small molecule-transcription factor complexes. J. Comput. Chem. 37(17): 1559-1564 (2016) - [j10]Chengfei Yan, Sam Z. Grinter, Benjamin Ryan Merideth, Zhiwei Ma, Xiaoqin Zou:
Iterative Knowledge-Based Scoring Functions Derived from Rigid and Flexible Decoy Structures: Evaluation with the 2013 and 2014 CSAR Benchmarks. J. Chem. Inf. Model. 56(6): 1013-1021 (2016) - 2015
- [j9]Chengfei Yan, Xiaoqin Zou:
Predicting peptide binding sites on protein surfaces by clustering chemical interactions. J. Comput. Chem. 36(1): 49-61 (2015) - 2014
- [j8]Sam Z. Grinter, Xiaoqin Zou:
A Bayesian statistical approach of improving knowledge-based scoring functions for protein-ligand interactions. J. Comput. Chem. 35(12): 932-943 (2014) - 2013
- [j7]Sheng-You Huang, Xiaoqin Zou:
A nonredundant structure dataset for benchmarking protein-RNA computational docking. J. Comput. Chem. 34(4): 311-318 (2013) - [j6]Sam Z. Grinter, Chengfei Yan, Sheng-You Huang, Lin Jiang, Xiaoqin Zou:
Automated Large-Scale File Preparation, Docking, and Scoring: Evaluation of ITScore and STScore Using the 2012 Community Structure-Activity Resource Benchmark. J. Chem. Inf. Model. 53(8): 1905-1914 (2013) - 2011
- [j5]Sheng-You Huang, Xiaoqin Zou:
Scoring and Lessons Learned with the CSAR Benchmark Using an Improved Iterative Knowledge-Based Scoring Function. J. Chem. Inf. Model. 51(9): 2097-2106 (2011) - [j4]Sheng-You Huang, Xiaoqin Zou:
Construction and Test of Ligand Decoy Sets Using MDock: Community Structure-Activity Resource Benchmarks for Binding Mode Prediction. J. Chem. Inf. Model. 51(9): 2107-2114 (2011) - 2010
- [j3]Sheng-You Huang, Xiaoqin Zou:
Inclusion of Solvation and Entropy in the Knowledge-Based Scoring Function for Protein-Ligand Interactions. J. Chem. Inf. Model. 50(2): 262-273 (2010) - 2006
- [j2]Sheng-You Huang, Xiaoqin Zou:
An iterative knowledge-based scoring function to predict protein-ligand interactions: I. Derivation of interaction potentials. J. Comput. Chem. 27(15): 1866-1875 (2006) - [j1]Sheng-You Huang, Xiaoqin Zou:
An iterative knowledge-based scoring function to predict protein-ligand interactions: II. Validation of the scoring function. J. Comput. Chem. 27(15): 1876-1882 (2006)
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