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Nicolas Alcaraz

Nicolas Alcaraz Millman

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affiliation: University of Southern Denmark, Institute of Molecular Medicine, Odense, Denmark
affiliation: Saarland University, Saarbrücken, Germany
affiliation: Max Planck Institute for Informatics, Saarbrücken, Germany

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Journal Articles

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2016
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Markus List, Nicolas Alcaraz, Martin Dissing-Hansen, Henrik J. Ditzel, Jan Mollenhauer, Jan Baumbach:
KeyPathwayMinerWeb: online multi-omics network enrichment. Nucleic Acids Res. 44(Webserver-Issue): W98-W104 (2016)
2014
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Nicolas Alcaraz, Josch Pauling, Richa Batra, Eudes Barbosa, Alexander Junge, Anne Christensen, Vasco Ariston de Carvalho Azevedo, Henrik J. Ditzel, Jan Baumbach:
KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape. BMC Syst. Biol. 8: 99 (2014)
2011
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  - journals/im/AlcarazKWWB11
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Nicolas Alcaraz, Hande Kücük, Jochen Weile, Anil Wipat, Jan Baumbach:
KeyPathwayMiner: Detecting Case-Specific Biological Pathways Using Expression Data. Internet Math. 7(4): 299-313 (2011)

Conference and Workshop Papers

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2016
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Simon J. Larsen, Frederik G. Alkærsig, Henrik J. Ditzel, Igor Jurisica, Nicolas Alcaraz, Jan Baumbach:
A Simulated Annealing Algorithm for Maximum Common Edge Subgraph Detection in Biological Networks. GECCO 2016: 341-348

Parts in Books or Collections

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2020
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Nicolas Alcaraz, Anne Hartebrodt, Markus List:
De Novo Pathway Enrichment with KeyPathwayMiner. Protein-Protein Interaction Networks 2020: 181-199
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Markus List, Nicolas Alcaraz, Richa Batra:
De Novo Pathway-Based Classification of Breast Cancer Subtypes. Protein-Protein Interaction Networks 2020: 201-213

Informal and Other Publications

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2016
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Nicolas Alcaraz, Markus List, Martin Dissing-Hansen, Marc Rehmsmeier, Qihua Tan, Jan Mollenhauer, Henrik J. Ditzel, Jan Baumbach:
Robust de novo pathway enrichment with KeyPathwayMiner 5. F1000Research 5: 1531 (2016)

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