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ORCIDEwy A Mathé
Person information
- affiliation: Ohio State University, Department of Biomedical Informatics, Columbus, OH, USA
- affiliation: George Mason University, Laboratory of Structural Bioinformatics, Manassas, VA, USA
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Journal Articles
- 2023
[j17]John C. Braisted
, Andrew Patt, Cole Tindall, Timothy Sheils, Jorge Neyra, Kyle Spencer, Tara Eicher, Ewy A Mathé:
RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes. Bioinform. 39(1) (2023)- [j16]Jaleal Sanjak, Jessica Binder, Arjun Singh Yadaw, Qian Zhu, Ewy A Mathé:
Clustering rare diseases within an ontology-enriched knowledge graph. J. Am. Medical Informatics Assoc. 31(1): 154-164 (2023) - [j15]Keith J. Kelleher, Timothy Sheils, Stephen L. Mathias, Jeremy J. Yang, Vincent T. Metzger, Vishal B. Siramshetty, Dac-Trung Nguyen, Lars Juhl Jensen, Dusica Vidovic, Stephan C. Schürer, Jayme Holmes, Karlie R. Sharma, Ajay Pillai, Cristian Bologa, Jeremy S. Edwards, Ewy A Mathé, Tudor I. Oprea:
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic Acids Res. 51(D1): 1405-1416 (2023) - 2022
- [j14]Qian Zhu, Chunxu Qu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Ðac-Trung Nguyen, Eric Sid, Ewy A Mathé, Yanji Xu:
Rare disease-based scientific annotation knowledge graph. Frontiers Artif. Intell. 5 (2022) - [j13]Gergely Zahoránszky-Köhalmi, Vishal B. Siramshetty, Praveen Kumar, Manideep Gurumurthy, Busola Grillo, Biju Mathew, Dimitrios Metaxatos, Mark Backus, Tim Mierzwa, Reid Simon, Ivan Grishagin, Laura Brovold, Ewy A Mathé, Matthew D. Hall, Samuel G. Michael, Alexander G. Godfrey, Jordi Mestres, Lars Juhl Jensen, Tudor I. Oprea:
A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research. J. Chem. Inf. Model. 62(3): 718-729 (2022) - [j12]Vishal B. Siramshetty, Ivan Grishagin, Ðac-Trung Nguyen, Tyler Peryea, Yulia Skovpen, Oleg Stroganov, Daniel Katzel, Timothy Sheils, Ajit Jadhav, Ewy A Mathé, Noel Southall:
NCATS Inxight Drugs: a comprehensive and curated portal for translational research. Nucleic Acids Res. 50(D1): 1307-1316 (2022) - 2021
- [j11]Zhaoqian Liu, Anjun Ma, Ewy A Mathé, Marlena Merling, Qin Ma, Bingqiang Liu:
Network analyses in microbiome based on high-throughput multi-omics data. Briefings Bioinform. 22(2): 1639-1655 (2021) - [j10]Tara Eicher, Jany Chan, Han Luu, Raghu Machiraju, Ewy A Mathé:
Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements. BMC Bioinform. 22(1): 35 (2021) - [j9]Timothy Sheils, Stephen L. Mathias, Keith J. Kelleher, Vishal B. Siramshetty, Dac-Trung Nguyen, Cristian Bologa, Lars Juhl Jensen, Dusica Vidovic, Amar Koleti, Stephan C. Schürer, Anna Waller, Jeremy J. Yang, Jayme Holmes, Giovanni Bocci, Noel Southall, Poorva Dharkar, Ewy A Mathé, Anton Simeonov, Tudor I. Oprea:
TCRD and Pharos 2021: mining the human proteome for disease biology. Nucleic Acids Res. 49(Database-Issue): D1334-D1346 (2021) - 2020
- [j8]Zhongming Zhao, Yulin Dai, Chi Zhang, Ewy A Mathé, Lai Wei, Kai Wang:
Correction to: The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases. BMC Bioinform. 21(1): 148 (2020) - [j7]Xia Ning, Chi Zhang, Kai Wang, Zhongming Zhao, Ewy A Mathé:
Correction to: The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions. BMC Medical Informatics Decis. Mak. 20(1): 77 (2020) - [j6]Xia Ning, Chi Zhang, Kai Wang, Zhongming Zhao, Ewy A Mathé:
The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions. BMC Medical Informatics Decis. Mak. 20-S(2): 51 (2020) - 2019
- [j5]Tara Eicher, Andrew Patt, Esko Kautto, Raghu Machiraju, Ewy A Mathé, Yan Zhang:
Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge. BMC Bioinform. 20-S(24): 669 (2019) - [j4]Zhongming Zhao, Yulin Dai, Chi Zhang, Ewy A Mathé, Lai Wei, Kai Wang:
The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases. BMC Bioinform. 20-S(24): 676 (2019) - 2018
- [j3]Jalal K. Siddiqui, Elizabeth Baskin, Mingrui Liu, Carmen Z. Cantemir-Stone, Bofei Zhang, Russell Bonneville, Joseph P. McElroy, Kevin R. Coombes, Ewy A Mathé:
IntLIM: integration using linear models of metabolomics and gene expression data. BMC Bioinform. 19(1): 81:1-81:12 (2018) - 2017
- [j2]Elizabeth Baskin, Rick Farouni, Ewy A Mathé:
ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data. Bioinform. 33(5): 740-742 (2017) - [j1]Elizabeth Baskin, Rick Farouni, Ewy A Mathé:
ALTRE: workflow for defining ALTered regulatory elements using chromatin accessibility data. Bioinform. 33(16): 2609 (2017)
Conference and Workshop Papers
- 2023
- [c3]Jeremy Parker Yang, Devon Leadman, Richard M. Ballew, Eric Sid, Yanji Xu, Ewy A Mathé, Qian Zhu:
User Centered Rare Disease Clinical Trial Knowledge Graph (RCTKG). MedInfo 2023: 94-98 - 2021
- [c2]Qian Zhu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Yanji Xu, Dac-Trung Nguyen, Ewy A Mathé, Eric Sid:
Scientific Evidence Based Knowledge Graph in Rare Diseases. BIBM 2021: 2614-2617 - 2008
- [c1]Majid Masso, Ewy A Mathé, Nida Parvez, Kahkeshan Hijazi, Iosif I. Vaisman:
Structure Based Functional Analysis of Bacteriophage f1 Gene V Protein. BIBM 2008: 402-406
Editorship
- 2016
- [e1]Ewy A Mathé, Sean R. Davis:
Statistical Genomics - Methods and Protocols. Methods in Molecular Biology 1418, Springer 2016, ISBN 978-1-4939-3576-5 [contents]
Informal and Other Publications
- 2022
- [i2]Corey Broeckling, Timothy M. D. Ebbels, Ewy A Mathé, Nicola Zamboni, Cecilia Wieder:
Computational Metabolomics: From Spectra to Knowledge (Dagstuhl Seminar 22181). Dagstuhl Reports 12(5): 1-16 (2022) - 2018
- [i1]Ewy A Mathé, Ben Busby, Helen Piontkivska, Team of Developers:
Matchmaking in Bioinformatics. F1000Research 7: 171 (2018)
Coauthor Index
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