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ORCIDJohn E. Karro
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- affiliation: Miami University, Department of Microbiology, Oxford, OH, USA
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Journal Articles
- 2016
[j6]Carly E. Schaeffer, Nathaniel D. Figueroa, Xiaolin Liu, John E. Karro:
phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary Repeats. Bioinform. 32(12): 209-215 (2016)- 2014
- [j5]Sutharzan Sreeskandarajan, Michelle M. Flowers, John E. Karro, Chun Liang:
A MATLAB-based tool for accurate detection of perfect overlapping and nested inverted repeats in DNA sequences. Bioinform. 30(6): 887-888 (2014) - 2010
- [j4]Dhananjai Madhava Rao, J. C. Moler, Mufit Ozden, Y. Zhang, C. Liang, John E. Karro:
PEACE: Parallel Environment for Assembly and Clustering of Gene Expression. Nucleic Acids Res. 38(Web-Server-Issue): 737-742 (2010) - 2008
- [j3]Martin Peifer
, John E. Karro, H. H. von Grünberg:
Is there an acceleration of the CpG transition rate during the mammalian radiation? Bioinform. 24(19): 2157-2164 (2008) - 2007
- [j2]John E. Karro, Yangpan Yan, Deyou Zheng, Zhaolei Zhang, Nicholas Carriero, Philip Cayting, Paul M. Harrison, Mark Gerstein:
Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation. Nucleic Acids Res. 35(Database-Issue): 55-60 (2007) - 2006
- [j1]Zhaolei Zhang, Nicholas Carriero, Deyou Zheng, John E. Karro, Paul M. Harrison, Mark Gerstein:
PseudoPipe: an automated pseudogene identification pipeline. Bioinform. 22(12): 1437-1439 (2006)
Conference and Workshop Papers
- 2013
- [c4]Nathaniel D. Figueroa, Xiaolin Liu, Jiajun Wang, John E. Karro:
RAIDER: Rapid Ab Initio Detection of Elementary Repeats. BSB 2013: 170-180 - 2012
- [c3]James T. Morton, Patricia Abrudan, Chun Liang, John E. Karro:
Poster: Sequence classification of homopolymer emissions (SCOPE). ICCABS 2012: 1 - [c2]Yuan Zhang, Dhananjai Madhava Rao, Mufit Ozden, Jens Mueller, Praveen Raj Kumar, Chun Liang, John E. Karro:
Poster: De novo expression fragment assembly from Spanning Trees (EAST). ICCABS 2012: 1 - 2011
- [c1]Yuan Zhang, Dhananjai Madhava Rao, Jens Mueller, Mufit Ozden, Chun Liang, John E. Karro:
Workshop: Transcript assembly through a d2-based MST approach. ICCABS 2011: 279
Coauthor Index
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