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Rafael Ferreira da Silva
Publications
- 2023
- [j32]Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman:
Performance assessment of ensembles of in situ workflows under resource constraints. Concurr. Comput. Pract. Exp. 35(20) (2023) - 2022
- [j28]Tainã Coleman, Henri Casanova, Loïc Pottier, Manav Kaushik, Ewa Deelman, Rafael Ferreira da Silva:
WfCommons: A framework for enabling scientific workflow research and development. Future Gener. Comput. Syst. 128: 16-27 (2022) - [c62]Valentin Honoré, Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Ewa Deelman, Frédéric Suter:
SIM-SITU: A Framework for the Faithful Simulation of in situ Processing. e-Science 2022: 182-191 - [c56]Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Frédéric Suter, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman:
Co-scheduling Ensembles of In Situ Workflows. WORKS@SC 2022: 43-51 - [c55]Ishan Abhinit, Emily K. Adams, Khairul Alam, Brian Chase, Ewa Deelman, Lev Gorenstein, Stephen Hudson, Tanzima Z. Islam, Jeffrey Larson, Geoffrey Lentner, Anirban Mandal, John-Luke Navarro, Bogdan Nicolae, Line Pouchard, Robert B. Ross, Banani Roy, Mats Rynge, Alexander Serebrenik, Karan Vahi, Stefan M. Wild, Yufeng Xin, Rafael Ferreira da Silva, Rosa Filgueira:
Novel Proposals for FAIR, Automated, Recommendable, and Robust Workflows. WORKS@SC 2022: 84-92 - [i16]Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Frédéric Suter, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman:
Co-scheduling Ensembles of In Situ Workflows. CoRR abs/2208.09190 (2022) - 2021
- [j27]George Papadimitriou, Cong Wang, Karan Vahi, Rafael Ferreira da Silva, Anirban Mandal, Zhengchun Liu, Rajiv Mayani, Mats Rynge, Mariam Kiran, Vickie E. Lynch, Rajkumar Kettimuthu, Ewa Deelman, Jeffrey S. Vetter, Ian T. Foster:
End-to-end online performance data capture and analysis for scientific workflows. Future Gener. Comput. Syst. 117: 387-400 (2021) - [j25]Tu Mai Anh Do, Loïc Pottier, Silvina Caíno-Lores, Rafael Ferreira da Silva, Michel A. Cuendet, Harel Weinstein, Trilce Estrada, Michela Taufer, Ewa Deelman:
A lightweight method for evaluating in situ workflow efficiency. J. Comput. Sci. 48: 101259 (2021) - [j24]Ewa Deelman, Rafael Ferreira da Silva, Karan Vahi, Mats Rynge, Rajiv Mayani, Ryan Tanaka, Wendy R. Whitcup, Miron Livny:
The Pegasus workflow management system: Translational computer science in practice. J. Comput. Sci. 52: 101200 (2021) - [j22]Yolanda Gil, Daniel Garijo, Deborah Khider, Craig A. Knoblock, Varun Ratnakar, Maximiliano Osorio, Hernán Vargas, Minh Pham, Jay Pujara, Basel Shbita, Binh Vu, Yao-Yi Chiang, Dan Feldman, Yijun Lin, Hayley Song, Vipin Kumar, Ankush Khandelwal, Michael S. Steinbach, Kshitij Tayal, Shaoming Xu, Suzanne A. Pierce, Lissa Pearson, Daniel Hardesty-Lewis, Ewa Deelman, Rafael Ferreira da Silva, Rajiv Mayani, Armen R. Kemanian, Yuning Shi, Lorne Leonard, Scott D. Peckham, Maria Stoica, Kelly M. Cobourn, Zeya Zhang, Christopher J. Duffy, Lele Shu:
Artificial Intelligence for Modeling Complex Systems: Taming the Complexity of Expert Models to Improve Decision Making. ACM Trans. Interact. Intell. Syst. 11(2): 11:1-11:49 (2021) - [c53]Michela Taufer, Ewa Deelman, Rafael Ferreira da Silva, Trilce Estrada, Mary W. Hall, Miron Livny:
A Roadmap to Robust Science for High-throughput Applications: The Developers' Perspective. CLUSTER 2021: 807-808 - [c52]Krzysztof Burkat, Maciej Pawlik, Bartosz Balis, Maciej Malawski, Karan Vahi, Mats Rynge, Rafael Ferreira da Silva, Ewa Deelman:
Serverless Containers - Rising Viable Approach to Scientific Workflows. e-Science 2021: 40-49 - [c50]Michela Taufer, Ewa Deelman, Rafael Ferreira da Silva, Trilce Estrada, Mary W. Hall:
A Roadmap to Robust Science for High-throughput Applications: The Scientists' Perspective. e-Science 2021: 247-248 - [c47]Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman:
Assessing Resource Provisioning and Allocation of Ensembles of In Situ Workflows. ICPP Workshops 2021: 38:1-38:10 - [c45]Henri Casanova, Ewa Deelman, Sandra Gesing, Michael D. Hildreth, Stephen Hudson, William Koch, Jeffrey Larson, Mary Ann McDowell, Natalie Meyers, John-Luke Navarro, George Papadimitriou, Ryan Tanaka, Ian J. Taylor, Douglas Thain, Stefan M. Wild, Rosa Filgueira, Rafael Ferreira da Silva:
Emerging Frameworks for Advancing Scientific Workflows Research, Development, and Education. WORKS 2021: 74-80 - [i12]Ewa Deelman, Anirban Mandal, Angela P. Murillo, Jarek Nabrzyski, Valerio Pascucci, Robert Ricci, Ilya Baldin, Susan Sons, Laura Christopherson, Charles Vardeman, Rafael Ferreira da Silva, Jane Wyngaard, Steve Petruzza, Mats Rynge, Karan Vahi, Wendy R. Whitcup, Josh Drake, Erik Scott:
Blueprint: Cyberinfrastructure Center of Excellence. CoRR abs/2103.04195 (2021) - [i11]Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Dan Laney, Dong H. Ahn, Shantenu Jha, Carole A. Goble, Lavanya Ramakrishnan, J. Luc Peterson, Bjoern Enders, Douglas Thain, Ilkay Altintas, Yadu N. Babuji, Rosa M. Badia, Vivien Bonazzi, Tainã Coleman, Michael R. Crusoe, Ewa Deelman, Frank Di Natale, Paolo Di Tommaso, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Alex Ganose, Björn A. Grüning, Daniel S. Katz, Olga A. Kuchar, Ana Kupresanin, Bertram Ludäscher, Ketan Maheshwari, Marta Mattoso, Kshitij Mehta, Todd S. Munson, Jonathan Ozik, Tom Peterka, Loic Pottier, Tim Randles, Stian Soiland-Reyes, Benjamín Tovar, Matteo Turilli, Thomas D. Uram, Karan Vahi, Michael Wilde, Matthew Wolf, Justin M. Wozniak:
Workflows Community Summit: Bringing the Scientific Workflows Community Together. CoRR abs/2103.09181 (2021) - [i9]Tainã Coleman, Henri Casanova, Loïc Pottier, Manav Kaushik, Ewa Deelman, Rafael Ferreira da Silva:
WfCommons: A Framework for Enabling Scientific Workflow Research and Development. CoRR abs/2105.14352 (2021) - [i6]Valentin Honoré, Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Ewa Deelman, Frédéric Suter:
SIM-SITU: A Framework for the Faithful Simulation of in-situ Workflows. CoRR abs/2112.15067 (2021) - 2020
- [j20]Rafael Ferreira da Silva, Henri Casanova, Anne-Cécile Orgerie, Ryan Tanaka, Ewa Deelman, Frédéric Suter:
Characterizing, Modeling, and Accurately Simulating Power and Energy Consumption of I/O-intensive Scientific Workflows. J. Comput. Sci. 44: 101157 (2020) - [c43]Loïc Pottier, Rafael Ferreira da Silva, Henri Casanova, Ewa Deelman:
Modeling the Performance of Scientific Workflow Executions on HPC Platforms with Burst Buffers. CLUSTER 2020: 92-103 - [c42]Tu Mai Anh Do, Loïc Pottier, Stephen Thomas, Rafael Ferreira da Silva, Michel A. Cuendet, Harel Weinstein, Trilce Estrada, Michela Taufer, Ewa Deelman:
A Novel Metric to Evaluate In Situ Workflows. ICCS (1) 2020: 538-553 - [c39]Rafael Ferreira da Silva, Loïc Pottier, Tainã Coleman, Ewa Deelman, Henri Casanova:
WorkflowHub: Community Framework for Enabling Scientific Workflow Research and Development. WORKS@SC 2020: 49-56 - [i5]Rafael Ferreira da Silva, Loïc Pottier, Tainã Coleman, Ewa Deelman, Henri Casanova:
WorkflowHub: Community Framework for Enabling Scientific Workflow Research and Development - Technical Report. CoRR abs/2009.00250 (2020) - [i4]Krzysztof Burkat, Maciej Pawlik, Bartosz Balis, Maciej Malawski, Karan Vahi, Mats Rynge, Rafael Ferreira da Silva, Ewa Deelman:
Serverless Containers - rising viable approach to Scientific Workflows. CoRR abs/2010.11320 (2020) - 2019
- [j19]Ewa Deelman, Karan Vahi, Mats Rynge, Rajiv Mayani, Rafael Ferreira da Silva, George Papadimitriou, Miron Livny:
The Evolution of the Pegasus Workflow Management Software. Comput. Sci. Eng. 21(4): 22-36 (2019) - [j18]Adam Brinckman, Ewa Deelman, Sandeep Gupta, Jarek Nabrzyski, Soowang Park, Rafael Ferreira da Silva, Ian J. Taylor, Karan Vahi:
Collaborative circuit designs using the CRAFT repository. Future Gener. Comput. Syst. 94: 841-853 (2019) - [j17]Rafael Ferreira da Silva, Rosa Filgueira, Ewa Deelman, Erola Pairo-Castineira, Ian Michael Overton, Malcolm P. Atkinson:
Using simple PID-inspired controllers for online resilient resource management of distributed scientific workflows. Future Gener. Comput. Syst. 95: 615-628 (2019) - [j16]Rafael Ferreira da Silva, Scott Callaghan, Tu Mai Anh Do, George Papadimitriou, Ewa Deelman:
Measuring the impact of burst buffers on data-intensive scientific workflows. Future Gener. Comput. Syst. 101: 208-220 (2019) - [c38]Ryan Mitchell, Loïc Pottier, Steve Jacobs, Rafael Ferreira da Silva, Mats Rynge, Karan Vahi, Ewa Deelman:
Exploration of Workflow Management Systems Emerging Features from Users Perspectives. IEEE BigData 2019: 4537-4544 - [c37]Rafael Ferreira da Silva, Rajiv Mayani, Yuning Shi, Armen R. Kemanian, Mats Rynge, Ewa Deelman:
Empowering Agroecosystem Modeling with HTC Scientific Workflows: The Cycles Model Use Case. IEEE BigData 2019: 4545-4552 - [c36]Michela Taufer, Ewa Deelman, Stephen Thomas, Michael R. Wyatt II, Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Harel Weinstein, Michel A. Cuendet, Trilce Estrada:
Characterizing In Situ and In Transit Analytics of Molecular Dynamics Simulations for Next-Generation Supercomputers. eScience 2019: 188-198 - [c35]Karan Vahi, Michael Zink, Mats Rynge, George Papadimitriou, Duncan A. Brown, Rajiv Mayani, Rafael Ferreira da Silva, Ewa Deelman, Anirban Mandal, Eric Lyons:
Custom Execution Environments with Containers in Pegasus-Enabled Scientific Workflows. eScience 2019: 281-290 - [c33]Rafael Ferreira da Silva, Anne-Cécile Orgerie, Henri Casanova, Ryan Tanaka, Ewa Deelman, Frédéric Suter:
Accurately Simulating Energy Consumption of I/O-Intensive Scientific Workflows. ICCS (1) 2019: 138-152 - [c32]Daniel Garijo, Deborah Khider, Varun Ratnakar, Yolanda Gil, Ewa Deelman, Rafael Ferreira da Silva, Craig A. Knoblock, Yao-Yi Chiang, Minh Pham, Jay Pujara, Binh Vu, Dan Feldman, Rajiv Mayani, Kelly M. Cobourn, Christopher J. Duffy, Armen R. Kemanian, Lele Shu, Vipin Kumar, Ankush Khandelwal, Kshitij Tayal, Scott D. Peckham, Maria Stoica, Anna Dabrowski, Daniel Hardesty-Lewis, Suzanne A. Pierce:
An intelligent interface for integrating climate, hydrology, agriculture, and socioeconomic models. IUI Companion 2019: 111-112 - [i3]Karan Vahi, Mats Rynge, George Papadimitriou, Duncan A. Brown, Rajiv Mayani, Rafael Ferreira da Silva, Ewa Deelman, Anirban Mandal, Eric Lyons, Michael Zink:
Custom Execution Environments with Containers in Pegasus-enabled Scientific Workflows. CoRR abs/1905.08204 (2019) - 2018
- [j15]Benjamín Tovar, Rafael Ferreira da Silva, Gideon Juve, Ewa Deelman, William E. Allcock, Douglas Thain, Miron Livny:
A Job Sizing Strategy for High-Throughput Scientific Workflows. IEEE Trans. Parallel Distributed Syst. 29(2): 240-253 (2018) - [c30]Rosa Filgueira, Rafael Ferreira da Silva, Ewa Deelman, Vyron Christodoulou, Amrey Krause:
IoT-Hub: New IoT Data-Platform for Virtual Research Environments. IWSG 2018 - 2017
- [j14]Idafen Santana-Pérez, Rafael Ferreira da Silva, Mats Rynge, Ewa Deelman, María S. Pérez-Hernández, Óscar Corcho:
Reproducibility of execution environments in computational science using Semantics and Clouds. Future Gener. Comput. Syst. 67: 354-367 (2017) - [j13]Rafael Ferreira da Silva, Rosa Filgueira, Ilia Pietri, Ming Jiang, Rizos Sakellariou, Ewa Deelman:
A characterization of workflow management systems for extreme-scale applications. Future Gener. Comput. Syst. 75: 228-238 (2017) - [j11]Ewa Deelman, Christopher D. Carothers, Anirban Mandal, Brian Tierney, Jeffrey S. Vetter, Ilya Baldin, Claris Castillo, Gideon Juve, Dariusz Król, Vickie E. Lynch, Benjamin Mayer, Jeremy S. Meredith, Thomas Proffen, Paul Ruth, Rafael Ferreira da Silva:
PANORAMA: An approach to performance modeling and diagnosis of extreme-scale workflows. Int. J. High Perform. Comput. Appl. 31(1): 4-18 (2017) - [c29]Anirban Mandal, Paul Ruth, Ilya Baldin, Rafael Ferreira da Silva, Ewa Deelman:
Toward Prioritization of Data Flows for Scientific Workflows Using Virtual Software Defined Exchanges. eScience 2017: 566-575 - [c28]Vickie E. Lynch, Jose Borreguero Calvo, Ewa Deelman, Rafael Ferreira da Silva, Monojoy Goswami, Yawei Hui, Eric J. Lingerfelt, Jeffrey S. Vetter:
Distributed workflows for modeling experimental data. HPEC 2017: 1-5 - [c27]Ian J. Taylor, Adam Brinckman, Ewa Deelman, Rafael Ferreira da Silva, Sandeep Gupta, Jarek Nabrzyski, Soowang Park, Karan Vahi:
Accelerating Circuit Realization via a Collaborative Gateway of Innovations. IWSG 2017 - [c26]Rafael Ferreira da Silva, Scott Callaghan, Ewa Deelman:
On the use of burst buffers for accelerating data-intensive scientific workflows. WORKS@SC 2017: 2:1-2:9 - 2016
- [j10]Ewa Deelman, Karan Vahi, Mats Rynge, Gideon Juve, Rajiv Mayani, Rafael Ferreira da Silva:
Pegasus in the Cloud: Science Automation through Workflow Technologies. IEEE Internet Comput. 20(1): 70-76 (2016) - [j9]Weiwei Chen, Rafael Ferreira da Silva, Ewa Deelman, Thomas Fahringer:
Dynamic and Fault-Tolerant Clustering for Scientific Workflows. IEEE Trans. Cloud Comput. 4(1): 49-62 (2016) - [c25]Rafael Ferreira da Silva, Ewa Deelman, Rosa Filgueira, Karan Vahi, Mats Rynge, Rajiv Mayani, Benjamin Mayer:
Automating environmental computing applications with scientific workflows. eScience 2016: 400-406 - [c24]Dariusz Król, Jacek Kitowski, Rafael Ferreira da Silva, Gideon Juve, Karan Vahi, Mats Rynge, Ewa Deelman:
Science automation in practice: Performance data farming in workflows. ETFA 2016: 1-4 - [c23]Dariusz Król, Rafael Ferreira da Silva, Ewa Deelman, Vickie E. Lynch:
Workflow Performance Profiles: Development and Analysis. Euro-Par Workshops 2016: 108-120 - [c22]Stephan Schlagkamp, Rafael Ferreira da Silva, William E. Allcock, Ewa Deelman, Uwe Schwiegelshohn:
Consecutive Job Submission Behavior at Mira Supercomputer. HPDC 2016: 93-96 - [c21]Stephan Schlagkamp, Rafael Ferreira da Silva, Ewa Deelman, Uwe Schwiegelshohn:
Understanding User Behavior: From HPC to HTC. ICCS 2016: 2241-2245 - [c18]Hassan Nawaz, Gideon Juve, Rafael Ferreira da Silva, Ewa Deelman:
Performance Analysis of an I/O-Intensive Workflow Executing on Google Cloud and Amazon Web Services. IPDPS Workshops 2016: 535-544 - [c17]Anirban Mandal, Paul Ruth, Ilya Baldin, Dariusz Król, Gideon Juve, Rajiv Mayani, Rafael Ferreira da Silva, Ewa Deelman, Jeremy S. Meredith, Jeffrey S. Vetter, Vickie E. Lynch, Benjamin Mayer, James Wynne, Mark P. Blanco, Christopher D. Carothers, Justin M. LaPre, Brian Tierney:
Toward an End-to-End Framework for Modeling, Monitoring and Anomaly Detection for Scientific Workflows. IPDPS Workshops 2016: 1370-1379 - [c16]Rosa Filgueira, Rafael Ferreira da Silva, Amrey Krause, Ewa Deelman, Malcolm P. Atkinson:
Asterism: Pegasus and Dispel4py Hybrid Workflows for Data-Intensive Science. DataCloud@SC 2016: 1-8 - [c15]Rafael Ferreira da Silva, Rosa Filgueira, Ewa Deelman, Erola Pairo-Castineira, Ian Michael Overton, Malcolm P. Atkinson:
Using Simple PID Controllers to Prevent and Mitigate Faults in Scientific Workflows. WORKS@SC 2016: 15-24 - 2015
- [j8]Ewa Deelman, Karan Vahi, Gideon Juve, Mats Rynge, Scott Callaghan, Philip Maechling, Rajiv Mayani, Weiwei Chen, Rafael Ferreira da Silva, Miron Livny, R. Kent Wenger:
Pegasus, a workflow management system for science automation. Future Gener. Comput. Syst. 46: 17-35 (2015) - [j7]Weiwei Chen, Rafael Ferreira da Silva, Ewa Deelman, Rizos Sakellariou:
Using imbalance metrics to optimize task clustering in scientific workflow executions. Future Gener. Comput. Syst. 46: 69-84 (2015) - [j6]Tristan Glatard, Lindsay B. Lewis, Rafael Ferreira da Silva, Reza Adalat, Natacha Beck, Claude Lepage, Pierre Rioux, Marc-Etienne Rousseau, Tarek Sherif, Ewa Deelman, Najmeh Khalili-Mahani, Alan C. Evans:
Reproducibility of neuroimaging analyses across operating systems. Frontiers Neuroinformatics 9: 12 (2015) - [j5]Rafael Ferreira da Silva, Gideon Juve, Mats Rynge, Ewa Deelman, Miron Livny:
Online Task Resource Consumption Prediction for Scientific Workflows. Parallel Process. Lett. 25(3): 1541003:1-1541003:25 (2015) - [c14]Gideon Juve, Benjamín Tovar, Rafael Ferreira da Silva, Dariusz Król, Douglas Thain, Ewa Deelman, William E. Allcock, Miron Livny:
Practical Resource Monitoring for Robust High Throughput Computing. CLUSTER 2015: 650-657 - [c13]Rafael Ferreira da Silva, Mats Rynge, Gideon Juve, Igor Sfiligoi, Ewa Deelman, James Letts, Frank Würthwein, Miron Livny:
Characterizing a High Throughput Computing Workload: The Compact Muon Solenoid (CMS) Experiment at LHC. ICCS 2015: 39-48 - 2014
- [c12]Rafael Ferreira da Silva, Weiwei Chen, Gideon Juve, Karan Vahi, Ewa Deelman:
Community Resources for Enabling Research in Distributed Scientific Workflows. eScience 2014: 177-184 - [c11]Idafen Santana-Pérez, Rafael Ferreira da Silva, Mats Rynge, Ewa Deelman, María S. Pérez-Hernández, Óscar Corcho:
A Semantic-Based Approach to Attain Reproducibility of Computational Environments in Scientific Workflows: A Case Study. Euro-Par Workshops (1) 2014: 452-463 - [c10]Sudarshan Srinivasan, Gideon Juve, Rafael Ferreira da Silva, Karan Vahi, Ewa Deelman:
A cleanup algorithm for implementing storage constraints in scientific workflow executions. WORKS@SC 2014: 41-49 - [i1]Doug James, Nancy Wilkins-Diehr, Victoria Stodden, Dirk Colbry, Carlos Rosales, Mark R. Fahey, Justin Shi, Rafael Ferreira da Silva, Kyo Lee, Ralph Roskies, Laurence Loewe, Susan Lindsey, Rob Kooper, Lorena A. Barba, David H. Bailey, Jonathan M. Borwein, Óscar Corcho, Ewa Deelman, Michael C. Dietze, Benjamin Gilbert, Jan Harkes, Seth Keele, Praveen Kumar, Jong Lee, Erika Linke, Richard Marciano, Luigi Marini, Chris Mattmann, Dave Mattson, Kenton McHenry, Robert T. McLay, Sheila Miguez, Barbara S. Minsker, María S. Pérez-Hernández, Dan Ryan, Mats Rynge, Idafen Santana-Pérez, Mahadev Satyanarayanan, Gloriana St. Clair, Keith Webster, Eivind Hovig, Daniel S. Katz, Sophie Kay, Geir Kjetil Sandve, David Skinner, Gabrielle Allen, John Cazes, Kym Won Cho, Jim Fonseca, Lorraine J. Hwang, Lars Koesterke, Pragnesh Patel, Line Pouchard, Edward Seidel, Isuru Suriarachchi:
Standing Together for Reproducibility in Large-Scale Computing: Report on reproducibility@XSEDE. CoRR abs/1412.5557 (2014) - 2013
- [c9]Sepideh Azarnoosh, Mats Rynge, Gideon Juve, Ewa Deelman, Michal Niec, Maciej Malawski, Rafael Ferreira da Silva:
Introducing PRECIP: An API for Managing Repeatable Experiments in the Cloud. CloudCom (2) 2013: 19-26 - [c8]Weiwei Chen, Rafael Ferreira da Silva, Ewa Deelman, Rizos Sakellariou:
Balanced Task Clustering in Scientific Workflows. e-Science 2013: 188-195 - [c5]Rafael Ferreira da Silva, Gideon Juve, Ewa Deelman, Tristan Glatard, Frédéric Desprez, Douglas Thain, Benjamín Tovar, Miron Livny:
Toward fine-grained online task characteristics estimation in scientific workflows. WORKS@SC 2013: 58-67
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