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Georgios V. Gkoutos
- > Home > Persons > Georgios V. Gkoutos
Publications
- 2023
- [j53]Luke T. Slater, John A. Williams, Paul N. Schofield, Sophie Russell, Samantha C. Pendleton, Andreas Karwath, Hilary Fanning, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos:
Klarigi: Characteristic explanations for semantic biomedical data. Comput. Biol. Medicine 153: 106425 (2023) - 2022
- [j51]Luke T. Slater, Sophie Russell, Silver Makepeace, Alexander Carberry, Andreas Karwath, John A. Williams, Hilary Fanning, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos:
Evaluating semantic similarity methods for comparison of text-derived phenotype profiles. BMC Medical Informatics Decis. Mak. 22(1): 33 (2022) - 2021
- [j49]Luke T. Slater, William Bradlow, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos:
Improved characterisation of clinical text through ontology-based vocabulary expansion. J. Biomed. Semant. 12(1): 7 (2021) - [j48]Senay Kafkas, Sara Althubaiti, Georgios V. Gkoutos, Robert Hoehndorf, Paul N. Schofield:
Linking common human diseases to their phenotypes; development of a resource for human phenomics. J. Biomed. Semant. 12(1): 17 (2021) - [j47]Luke T. Slater, William Bradlow, Dino FA. Motti, Robert Hoehndorf, Simon Ball, Georgios V. Gkoutos:
A fast, accurate, and generalisable heuristic-based negation detection algorithm for clinical text. Comput. Biol. Medicine 130: 104216 (2021) - [j46]Luke T. Slater, Andreas Karwath, John A. Williams, Sophie Russell, Silver Makepeace, Alexander Carberry, Robert Hoehndorf, Georgios V. Gkoutos:
Towards similarity-based differential diagnostics for common diseases. Comput. Biol. Medicine 133: 104360 (2021) - [j43]Luke T. Slater, John A. Williams, Andreas Karwath, Hilary Fanning, Simon Ball, Paul N. Schofield, Robert Hoehndorf, Georgios V. Gkoutos:
Multi-faceted semantic clustering with text-derived phenotypes. Comput. Biol. Medicine 138: 104904 (2021) - [j42]Luke T. Slater, Andreas Karwath, Robert Hoehndorf, Georgios V. Gkoutos:
Effects of Negation and Uncertainty Stratification on Text-Derived Patient Profile Similarity. Frontiers Digit. Health 3: 781227 (2021) - 2020
- [j36]Luke T. Slater, Georgios V. Gkoutos, Robert Hoehndorf:
Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies. BMC Medical Informatics Decis. Mak. 20-S(10): 311 (2020) - 2019
- [j35]Imane Boudellioua, Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf:
DeepPVP: phenotype-based prioritization of causative variants using deep learning. BMC Bioinform. 20(1): 65 (2019) - 2018
- [j34]Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
The anatomy of phenotype ontologies: principles, properties and applications. Briefings Bioinform. 19(5): 1008-1021 (2018) - [j33]Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf:
Ontology-based validation and identification of regulatory phenotypes. Bioinform. 34(17): i857-i865 (2018) - [c14]Maxat Kulmanov, Senay Kafkas, Andreas Karwath, Alexander Malic, Georgios V. Gkoutos, Michel Dumontier, Robert Hoehndorf:
Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings. SWAT4LS 2018 - 2017
- [j31]Miguel Ángel Rodríguez-García, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
Integrating phenotype ontologies with PhenomeNET. J. Biomed. Semant. 8(1): 58:1-58:11 (2017) - [j30]Imane Boudellioua, Rozaimi B. Mahamad Razali, Maxat Kulmanov, Yasmeen Hashish, Vladimir B. Bajic, Eva Goncalves-Serra, Nadia Schoenmakers, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
Semantic prioritization of novel causative genomic variants. PLoS Comput. Biol. 13(4) (2017) - 2016
- [j28]Hannah M. Fisher, Robert Hoehndorf, Bruno S. Bazelato, Soheil S. Dadras, Lloyd E. King, Georgios V. Gkoutos, John P. Sundberg, Paul N. Schofield:
DermO; an ontology for the description of dermatologic disease. J. Biomed. Semant. 7: 38 (2016) - [j27]Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
Using AberOWL for fast and scalable reasoning over BioPortal ontologies. J. Biomed. Semant. 7: 49 (2016) - [j26]Robert Hoehndorf, Mona Alshahrani, Georgios V. Gkoutos, George Gosline, Quentin Groom, Thomas Hamann, Jens Kattge, Sylvia Mota de Oliveira, Marco Schmidt, Soraya Sierra, Erik Smets, Rutger A. Vos, Claus Weiland:
The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants. J. Biomed. Semant. 7: 65:1-65:11 (2016) - [c13]Robert Hoehndorf, Liam Mencel, Georgios V. Gkoutos, Paul N. Schofield:
Large-Scale Reasoning over Functions in Biomedical Ontologies. FOIS 2016: 299-312 - [c11]Miguel Ángel Rodríguez-García, Luke T. Slater, Imane Boudellioua, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf:
Updates to the AberOWL Ontology Repository. ICBO/BioCreative 2016 - [c10]Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
To MIREOT or not to MIREOT? A Case Study of the Impact of Using MIREOT in the Experimental Factor Ontology (EFO). ICBO/BioCreative 2016 - [c9]Miguel Ángel Rodríguez-García, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
Integrating phenotype ontologies with PhenomeNET. OM@ISWC 2016: 201-209 - 2015
- [j25]Robert Hoehndorf, Paul N. Schofield, Georgios V. Gkoutos:
The role of ontologies in biological and biomedical research: a functional perspective. Briefings Bioinform. 16(6): 1069-1080 (2015) - [j24]Robert Hoehndorf, Michael Gruenberger, Georgios V. Gkoutos, Paul N. Schofield:
Similarity-based search of model organism, disease and drug effect phenotypes. J. Biomed. Semant. 6: 6 (2015) - [j23]Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos:
Aber-OWL: a framework for ontology-based data access in biology. BMC Bioinform. 16: 26:1-26:9 (2015) - [c8]Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies. ICBO 2015 - [c7]Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
AberOWL: an ontology portal with OWL EL reasoning. ICBO 2015 - [c6]Luke T. Slater, Miguel Ángel Rodríguez-García, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf:
Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning. OWLED 2015: 81-86 - [c5]Miguel Ángel Rodríguez-García, Luke T. Slater, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf:
Visualising Ontologies with AberOWL. SWAT4LS 2015: 183-192 - 2014
- [j22]Robert Hoehndorf, Tanya Hiebert, Nigel W. Hardy, Paul N. Schofield, Georgios V. Gkoutos, Michel Dumontier:
Mouse model phenotypes provide information about human drug targets. Bioinform. 30(5): 719-725 (2014) - [c4]Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos:
Aber-OWL: A Framework for Ontology-based Data Access in Biology. SWAT4LS 2014 - [i3]Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos:
Aber-OWL: a framework for ontology-based data access in biology. CoRR abs/1407.6812 (2014) - 2013
- [j20]Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos:
Evaluation of research in biomedical ontologies. Briefings Bioinform. 14(6): 696-712 (2013) - [j17]Daniel L. Cook, Maxwell Lewis Neal, Robert Hoehndorf, Georgios V. Gkoutos, John H. Gennari:
Representing physiological processes and their participants with PhysioMaps. J. Biomed. Semant. 4(S-1): S2 (2013) - 2012
- [j16]Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
The Units Ontology: a tool for integrating units of measurement in science. Database J. Biol. Databases Curation 2012 (2012) - [j15]Sarala M. Wimalaratne, Pierre Grenon, Robert Hoehndorf, Georgios V. Gkoutos, Bernard de Bono:
An infrastructure for ontology-based information systems in biomedicine: RICORDO case study. Bioinform. 28(3): 448-450 (2012) - [j14]Robert Hoehndorf, Midori A. Harris, Heinrich Herre, Gabriella Rustici, Georgios V. Gkoutos:
Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology. Bioinform. 28(13): 1783-1789 (2012) - [j13]Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos:
Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics. Bioinform. 28(16): 2169-2175 (2012) - [j12]Anika Oellrich, Georgios V. Gkoutos, Robert Hoehndorf, Dietrich Rebholz-Schuhmann:
Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology. J. Biomed. Semant. 3(S-2): S1 (2012) - [j11]Georgios V. Gkoutos, Robert Hoehndorf:
Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes. J. Biomed. Semant. 3(S-2): S6 (2012) - [c3]Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos:
Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing. Pacific Symposium on Biocomputing 2012: 388-399 - [i2]Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos:
Towards quantitative measures in applied ontology. CoRR abs/1202.3602 (2012) - 2011
- [j10]Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos:
A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinform. 27(7): 1001-1008 (2011) - [j9]Nico Adams, Robert Hoehndorf, Georgios V. Gkoutos, Gesine Hansen, Christian Hennig:
PIDO: the primary immunodeficiency disease ontology. Bioinform. 27(22): 3193-3199 (2011) - [j7]Robert Hoehndorf, Michel Dumontier, John H. Gennari, Sarala M. Wimalaratne, Bernard de Bono, Daniel L. Cook, Georgios V. Gkoutos:
Integrating systems biology models and biomedical ontologies. BMC Syst. Biol. 5: 124 (2011) - [c2]Hiroshi Masuya, Georgios V. Gkoutos, Nobuhiko Tanaka, Kazunori Waki, Yoshihiro Okuda, Tatsuya Kushida, Norio Kobayashi, Koji Doi, Kouji Kozaki, Robert Hoehndorf, Shigeharu Wakana, Tetsuro Toyoda, Riichiro Mizoguchi:
An Advanced Strategy for Integration of Biological Measurement Data. ICBO 2011
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