BibTeX records: Bianca Habermann

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@article{DBLP:journals/jossw/LucasTNPMHT23,
  author       = {Maxime Lucas and
                  Alex Townsend{-}Teague and
                  Matteo Neri and
                  Simone Poetto and
                  Arthur Morris and
                  Bianca Habermann and
                  Laurent Tichit},
  title        = {Phasik: a Python package to identify system states in partially temporal
                  networks},
  journal      = {J. Open Source Softw.},
  volume       = {8},
  number       = {92},
  pages        = {5872},
  year         = {2023},
  url          = {https://doi.org/10.21105/joss.05872},
  doi          = {10.21105/JOSS.05872},
  timestamp    = {Sun, 31 Dec 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jossw/LucasTNPMHT23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/MarchianoHH22,
  author       = {Fabio Marchiano and
                  Margaux Haering and
                  Bianca Hermine Habermann},
  title        = {The mitoXplorer 2.0 update: integrating and interpreting mitochondrial
                  expression dynamics within a cellular context},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{W1}},
  pages        = {490--499},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkac306},
  doi          = {10.1093/NAR/GKAC306},
  timestamp    = {Thu, 09 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/MarchianoHH22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/PrytuliakPH18,
  author       = {Roman Prytuliak and
                  Friedhelm Pfeiffer and
                  Bianca Habermann},
  title        = {SLALOM, a flexible method for the identification and statistical analysis
                  of overlapping continuous sequence elements in sequence- and time-series
                  data},
  journal      = {{BMC} Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {24:1--24:19},
  year         = {2018},
  url          = {https://doi.org/10.1186/s12859-018-2020-x},
  doi          = {10.1186/S12859-018-2020-X},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/PrytuliakPH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/KrempelKYLHF18,
  author       = {Rasmus Krempel and
                  Pranav Kulkarni and
                  Annie Yim and
                  Ulrich Lang and
                  Bianca Habermann and
                  Peter Frommolt},
  title        = {Integrative analysis and machine learning on cancer genomics data
                  using the Cancer Systems Biology Database (CancerSysDB)},
  journal      = {{BMC} Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {156:1--156:10},
  year         = {2018},
  url          = {https://doi.org/10.1186/s12859-018-2157-7},
  doi          = {10.1186/S12859-018-2157-7},
  timestamp    = {Tue, 04 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/KrempelKYLHF18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/PrytuliakVMH17,
  author       = {Roman Prytuliak and
                  Michael Volkmer and
                  Markus Meier and
                  Bianca Habermann},
  title        = {HH-MOTiF: de novo detection of short linear motifs in proteins by
                  Hidden Markov Model comparisons},
  journal      = {Nucleic Acids Res.},
  volume       = {45},
  number       = {Webserver-Issue},
  pages        = {W470--W477},
  year         = {2017},
  url          = {https://doi.org/10.1093/nar/gkx341},
  doi          = {10.1093/NAR/GKX341},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PrytuliakVMH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/biodb/VillavecesJPdDD15,
  author       = {Jose M. Villaveces and
                  Rafael C. Jim{\'{e}}nez and
                  Pablo Porras and
                  Noemi del{-}Toro and
                  Margaret J. Duesbury and
                  Marine Dumousseau and
                  Sandra E. Orchard and
                  H. Choi and
                  Peipei Ping and
                  N. C. Zong and
                  Manor Askenazi and
                  Bianca Habermann and
                  Henning Hermjakob},
  title        = {Merging and scoring molecular interactions utilising existing community
                  standards: tools, use-cases and a case study},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2015},
  year         = {2015},
  url          = {https://doi.org/10.1093/database/bau131},
  doi          = {10.1093/DATABASE/BAU131},
  timestamp    = {Thu, 25 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/VillavecesJPdDD15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/WagnerVSVOSH14,
  author       = {Ines Wagner and
                  Michael Volkmer and
                  Malvika Sharan and
                  Jose M. Villaveces and
                  Felix Oswald and
                  Vineeth Surendranath and
                  Bianca Habermann},
  title        = {morFeus: a web-based program to detect remotely conserved orthologs
                  using symmetrical best hits and orthology network scoring},
  journal      = {{BMC} Bioinform.},
  volume       = {15},
  pages        = {263},
  year         = {2014},
  url          = {https://doi.org/10.1186/1471-2105-15-263},
  doi          = {10.1186/1471-2105-15-263},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/WagnerVSVOSH14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/StewartRTNBCAWPBLSVHTTD13,
  author       = {Ron M. Stewart and
                  Cynthia Alexander Rasc{\'{o}}n and
                  Shulan Tian and
                  Jeff Nie and
                  Chris Barry and
                  Li{-}Fang Chu and
                  Hamisha Ardalani and
                  Ryan J. Wagner and
                  Mitchell D. Probasco and
                  Jennifer M. Bolin and
                  Ning Leng and
                  Srikumar Sengupta and
                  Michael Volkmer and
                  Bianca Habermann and
                  Elly M. Tanaka and
                  James A. Thomson and
                  Colin N. Dewey},
  title        = {Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene
                  Burst Highlights Early Gene Expression in the Blastema},
  journal      = {PLoS Comput. Biol.},
  volume       = {9},
  number       = {3},
  year         = {2013},
  url          = {https://doi.org/10.1371/journal.pcbi.1002936},
  doi          = {10.1371/JOURNAL.PCBI.1002936},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/StewartRTNBCAWPBLSVHTTD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/SurendranathCHBH10,
  author       = {Vineeth Surendranath and
                  Janet Chusainow and
                  Joachim Hauber and
                  Frank Buchholz and
                  Bianca Habermann},
  title        = {SeLOX - a locus of recombination site search tool for the detection
                  and directed evolution of site-specific recombination systems},
  journal      = {Nucleic Acids Res.},
  volume       = {38},
  number       = {Web-Server-Issue},
  pages        = {293--298},
  year         = {2010},
  url          = {https://doi.org/10.1093/nar/gkq523},
  doi          = {10.1093/NAR/GKQ523},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/SurendranathCHBH10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/OliverDQAHKSJKSJM09,
  author       = {Helen Oliver and
                  Gayo Diallo and
                  Ed de Quincey and
                  Dimitra Alexopoulou and
                  Bianca Habermann and
                  Patty Kostkova and
                  Michael Schroeder and
                  Simon Jupp and
                  Khaled Khelif and
                  Robert Stevens and
                  Gawesh Jawaheer and
                  Gemma Madle},
  title        = {A user-centred evaluation framework for the Sealife semantic web browsers},
  journal      = {{BMC} Bioinform.},
  volume       = {10},
  number       = {{S-10}},
  pages        = {14},
  year         = {2009},
  url          = {https://doi.org/10.1186/1471-2105-10-S10-S14},
  doi          = {10.1186/1471-2105-10-S10-S14},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/OliverDQAHKSJKSJM09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/iat/QuinceyOKJMDASHKJS09,
  author       = {Ed de Quincey and
                  Helen Oliver and
                  Patty Kostkova and
                  Gawesh Jawaheer and
                  Gemma Madle and
                  Gayo Diallo and
                  Dimitra Alexopoulou and
                  Michael Schroeder and
                  Bianca Habermann and
                  Khaled Khelif and
                  Simon Jupp and
                  Robert Stevens},
  title        = {Mining for Patterns of Semantic Link Usage: Do Domain Users Actually
                  Like Semantic Browsing?},
  booktitle    = {Proceedings of the 2009 {IEEE/WIC/ACM} International Conference on
                  Web Intelligence and International Conference on Intelligent Agent
                  Technology - Workshops, Milan, Italy, 15-18 September 2009},
  pages        = {50--53},
  year         = {2009},
  crossref     = {DBLP:conf/iat/2009w},
  url          = {https://doi.org/10.1109/WI-IAT.2009.228},
  doi          = {10.1109/WI-IAT.2009.228},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/iat/QuinceyOKJMDASHKJS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/BradshawSH06,
  author       = {Charles Richard Bradshaw and
                  Vineeth Surendranath and
                  Bianca Habermann},
  title        = {ProFAT: a web-based tool for the functional annotation of protein
                  sequences},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {466},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-466},
  doi          = {10.1186/1471-2105-7-466},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/BradshawSH06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/healthgrid/SchroederBKSHD06,
  author       = {Michael Schroeder and
                  Albert Burger and
                  Patty Kostkova and
                  Robert Stevens and
                  Bianca Habermann and
                  Rose Dieng{-}Kuntz},
  title        = {Sealife: {A} Semantic Grid Browser for the Life Sciences Applied to
                  the Study of Infectious Diseases},
  booktitle    = {Challenges and Opportunities of HealthGrids - Proceedings of Healthgrid
                  2006, Valencia, Spain, 7-9 June, 2006},
  pages        = {167--178},
  year         = {2006},
  crossref     = {DBLP:conf/healthgrid/2006},
  url          = {http://www.booksonline.iospress.nl/Content/View.aspx?piid=4734},
  timestamp    = {Mon, 21 Jan 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/healthgrid/SchroederBKSHD06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/HenschelBH04,
  author       = {Andreas Henschel and
                  Frank Buchholz and
                  Bianca Habermann},
  title        = {{DEQOR:} a web-based tool for the design and quality control of siRNAs},
  journal      = {Nucleic Acids Res.},
  volume       = {32},
  number       = {Web-Server-Issue},
  pages        = {113--120},
  year         = {2004},
  url          = {https://doi.org/10.1093/nar/gkh408},
  doi          = {10.1093/NAR/GKH408},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HenschelBH04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@proceedings{DBLP:conf/iat/2009w,
  title        = {Proceedings of the 2009 {IEEE/WIC/ACM} International Conference on
                  Web Intelligence and International Conference on Intelligent Agent
                  Technology - Workshops, Milan, Italy, 15-18 September 2009},
  publisher    = {{IEEE} Computer Society},
  year         = {2009},
  url          = {https://ieeexplore.ieee.org/xpl/tocresult.jsp?isnumber=5284931},
  timestamp    = {Thu, 25 Apr 2024 06:42:45 +0200},
  biburl       = {https://dblp.org/rec/conf/iat/2009w.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@proceedings{DBLP:conf/healthgrid/2006,
  editor       = {Vicente Hern{\'{a}}ndez and
                  Ignacio Blanquer and
                  Tony Solomonides and
                  Vincent Breton and
                  Yannick Legr{\'{e}}},
  title        = {Challenges and Opportunities of HealthGrids - Proceedings of Healthgrid
                  2006, Valencia, Spain, 7-9 June, 2006},
  series       = {Studies in Health Technology and Informatics},
  volume       = {120},
  publisher    = {{IOS} Press},
  year         = {2006},
  url          = {http://www.booksonline.iospress.nl/Content/View.aspx?piid=114},
  isbn         = {978-1-58603-617-1},
  timestamp    = {Thu, 25 Apr 2024 06:42:45 +0200},
  biburl       = {https://dblp.org/rec/conf/healthgrid/2006.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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