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ORCIDBibTeX records: Nicole A. Vasilevsky
@article{DBLP:journals/biomedsem/ChanTDMSGVMRMH23,
author = {Lauren E. Chan and
Anne E. Thessen and
William D. Duncan and
Nicolas Matentzoglu and
Charles Schmitt and
Cynthia J. Grondin and
Nicole A. Vasilevsky and
Julie A. McMurry and
Peter N. Robinson and
Christopher J. Mungall and
Melissa A. Haendel},
title = {The Environmental Conditions, Treatments, and Exposures Ontology {(ECTO):}
connecting toxicology and exposure to human health and beyond},
journal = {J. Biomed. Semant.},
volume = {14},
number = {1},
pages = {3},
year = {2023},
url = {https://doi.org/10.1186/s13326-023-00283-x},
doi = {10.1186/S13326-023-00283-X},
timestamp = {Thu, 13 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/ChanTDMSGVMRMH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/lp/HosseiniCHKVH23,
author = {Mohammad Hosseini and
Julien Colomb and
Alex O. Holcombe and
Barbara Kern and
Nicole A. Vasilevsky and
Kristi L. Holmes},
title = {Evolution and adoption of contributor role ontologies and taxonomies},
journal = {Learn. Publ.},
volume = {36},
number = {2},
pages = {275--284},
year = {2023},
url = {https://doi.org/10.1002/leap.1496},
doi = {10.1002/LEAP.1496},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/lp/HosseiniCHKVH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/CallahanSWZOBBBCCCDFLMMMRSTTVWZDR23,
author = {Tiffany J. Callahan and
Adrianne L. Stefanski and
Jordan M. Wyrwa and
Chenjie Zeng and
Anna Ostropolets and
Juan M. Banda and
William A. Baumgartner Jr. and
Richard D. Boyce and
Elena Casiraghi and
Ben D. Coleman and
Janine H. Collins and
Sara J. Deakyne Davies and
James A. Feinstein and
Asiyah Y. Lin and
Blake Martin and
Nicolas A. Matentzoglu and
Daniella Meeker and
Justin T. Reese and
Jessica Sinclair and
Sanya Bathla Taneja and
Katy E. Trinkley and
Nicole A. Vasilevsky and
Andrew E. Williams and
Xingmin Aaron Zhang and
Joshua C. Denny and
Patrick B. Ryan and
George Hripcsak and
Tellen D. Bennett and
Melissa A. Haendel and
Peter N. Robinson and
Lawrence E. Hunter and
Michael G. Kahn},
title = {Ontologizing health systems data at scale: making translational discovery
a reality},
journal = {npj Digit. Medicine},
volume = {6},
year = {2023},
url = {https://doi.org/10.1038/s41746-023-00830-x},
doi = {10.1038/S41746-023-00830-X},
timestamp = {Tue, 02 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/npjdm/CallahanSWZOBBBCCCDFLMMMRSTTVWZDR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/om2/MatentzogluBCGG23,
author = {Nicolas Matentzoglu and
Ian Braun and
Anita R. Caron and
Damien Goutte{-}Gattat and
Benjamin M. Gyori and
Nomi L. Harris and
Emily Hartley and
Harshad B. Hegde and
Sven Hertling and
Charles Tapley Hoyt and
Hyeongsik Kim and
Huanyu Li and
James A. McLaughlin and
C{\'{a}}ssia Trojahn and
Nicole A. Vasilevsky and
Christopher J. Mungall},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Oktie Hassanzadeh and
C{\'{a}}ssia Trojahn},
title = {A simple standard for ontological mappings 2023: updates on data model,
collaborations and tooling},
booktitle = {Proceedings of the 18th International Workshop on Ontology Matching
co-located with the 22nd International Semantic Web Conference {(ISWC}
2023), Athens, Greece, November 7, 2023},
series = {{CEUR} Workshop Proceedings},
volume = {3591},
pages = {73--78},
publisher = {CEUR-WS.org},
year = {2023},
url = {https://ceur-ws.org/Vol-3591/om2023\_STpaper3.pdf},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/om2/MatentzogluBCGG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-05727,
author = {Tiffany J. Callahan and
Ignacio J. Tripodi and
Adrianne L. Stefanski and
Luca Cappelletti and
Sanya Bathla Taneja and
Jordan M. Wyrwa and
Elena Casiraghi and
Nicolas A. Matentzoglu and
Justin T. Reese and
Jonathan C. Silverstein and
Charles Tapley Hoyt and
Richard D. Boyce and
Scott A. Malec and
Deepak R. Unni and
Marcin P. Joachimiak and
Peter N. Robinson and
Christopher J. Mungall and
Emanuele Cavalleri and
Tommaso Fontana and
Giorgio Valentini and
Marco Mesiti and
Lucas A. Gillenwater and
Brook E. Santangelo and
Nicole A. Vasilevsky and
Robert Hoehndorf and
Tellen D. Bennett and
Patrick B. Ryan and
George Hripcsak and
Michael G. Kahn and
Michael Bada and
William A. Baumgartner Jr. and
Lawrence E. Hunter},
title = {An Open-Source Knowledge Graph Ecosystem for the Life Sciences},
journal = {CoRR},
volume = {abs/2307.05727},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2307.05727},
doi = {10.48550/ARXIV.2307.05727},
eprinttype = {arXiv},
eprint = {2307.05727},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2307-05727.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MatentzogluBBBB22,
author = {Nicolas Matentzoglu and
James P. Balhoff and
Susan M. Bello and
Chris Bizon and
Matthew H. Brush and
Tiffany J. Callahan and
Christopher G. Chute and
William D. Duncan and
Chris T. A. Evelo and
Davera Gabriel and
John Graybeal and
Alasdair J. G. Gray and
Benjamin M. Gyori and
Melissa A. Haendel and
Henriette Harmse and
Nomi L. Harris and
Ian Harrow and
Harshad Hegde and
Amelia L. Hoyt and
Charles Tapley Hoyt and
Dazhi Jiao and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Simon Jupp and
Hyeongsik Kim and
Sebastian K{\"{o}}hler and
Thomas Liener and
Qinqin Long and
James Malone and
James A. McLaughlin and
Julie A. McMurry and
Sierra A. T. Moxon and
Monica C. Munoz{-}Torres and
David Osumi{-}Sutherland and
James A. Overton and
Bjoern Peters and
Tim E. Putman and
N{\'{u}}ria Queralt{-}Rosinach and
Kent A. Shefchek and
Harold Solbrig and
Anne E. Thessen and
Tania Tudorache and
Nicole A. Vasilevsky and
Alex H. Wagner and
Christopher J. Mungall},
title = {A Simple Standard for Sharing Ontological Mappings {(SSSOM)}},
journal = {Database J. Biol. Databases Curation},
volume = {2022},
number = {2022},
year = {2022},
url = {https://doi.org/10.1093/database/baac035},
doi = {10.1093/DATABASE/BAAC035},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/MatentzogluBBBB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MatentzogluGTBC22,
author = {Nicolas Matentzoglu and
Damien Goutte{-}Gattat and
Shawn Zheng Kai Tan and
James P. Balhoff and
Seth Carbon and
Anita R. Caron and
William D. Duncan and
Joe E. Flack and
Melissa A. Haendel and
Nomi L. Harris and
William R. Hogan and
Charles Tapley Hoyt and
Rebecca C. Jackson and
Hyeongsik Kim and
H{\"{u}}seyin Kir and
Martin Larralde and
Julie A. McMurry and
James A. Overton and
Bjoern Peters and
Clare Pilgrim and
Raymund Stefancsik and
Sofia M. C. Robb and
Sabrina Toro and
Nicole A. Vasilevsky and
Ramona L. Walls and
Christopher J. Mungall and
David Osumi{-}Sutherland},
title = {Ontology Development Kit: a toolkit for building, maintaining and
standardizing biomedical ontologies},
journal = {Database J. Biol. Databases Curation},
volume = {2022},
number = {2022},
year = {2022},
url = {https://doi.org/10.1093/database/baac087},
doi = {10.1093/DATABASE/BAAC087},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/MatentzogluGTBC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/QuagliaBBV22,
author = {Federica Quaglia and
Rama Balakrishnan and
Susan M. Bello and
Nicole A. Vasilevsky},
title = {Conference report: Biocuration 2021 Virtual Conference},
journal = {Database J. Biol. Databases Curation},
volume = {2022},
number = {2022},
year = {2022},
url = {https://doi.org/10.1093/database/baac027},
doi = {10.1093/DATABASE/BAAC027},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/QuagliaBBV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/MatentzogluFGHH22,
author = {Nicolas Matentzoglu and
Joe E. Flack and
John Graybeal and
Nomi L. Harris and
Harshad B. Hegde and
Charles Tapley Hoyt and
Hyeongsik Kim and
Sabrina Toro and
Nicole A. Vasilevsky and
Christopher J. Mungall},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Oktie Hassanzadeh and
C{\'{a}}ssia Trojahn},
title = {A simple standard for ontological mappings 2022: updates of data model
and outlook},
booktitle = {Proceedings of the 17th International Workshop on Ontology Matching
{(OM} 2022) co-located with the 21th International Semantic Web Conference
{(ISWC} 2022), Hangzhou, China, held as a virtual conference, October
23, 2022},
series = {{CEUR} Workshop Proceedings},
volume = {3324},
pages = {61--66},
publisher = {CEUR-WS.org},
year = {2022},
url = {https://ceur-ws.org/Vol-3324/om2022\_LTpaper6.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:07 +0100},
biburl = {https://dblp.org/rec/conf/semweb/MatentzogluFGHH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-02056,
author = {Nicolas Matentzoglu and
Damien Goutte{-}Gattat and
Shawn Zheng Kai Tan and
James P. Balhoff and
Seth Carbon and
Anita R. Caron and
William D. Duncan and
Joe E. Flack and
Melissa A. Haendel and
Nomi L. Harris and
William R. Hogan and
Charles Tapley Hoyt and
Rebecca C. Jackson and
Hyeongsik Kim and
H{\"{u}}seyin Kir and
Martin Larralde and
Julie A. McMurry and
James A. Overton and
Bjoern Peters and
Clare Pilgrim and
Raymund Stefancsik and
Sofia M. C. Robb and
Sabrina Toro and
Nicole A. Vasilevsky and
Ramona L. Walls and
Christopher J. Mungall and
David Osumi{-}Sutherland},
title = {Ontology Development Kit: a toolkit for building, maintaining, and
standardising biomedical ontologies},
journal = {CoRR},
volume = {abs/2207.02056},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2207.02056},
doi = {10.48550/ARXIV.2207.02056},
eprinttype = {arXiv},
eprint = {2207.02056},
timestamp = {Thu, 15 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2207-02056.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2209-04732,
author = {Tiffany J. Callahan and
Adrianne L. Stefanski and
Jordan M. Wyrwa and
Chenjie Zeng and
Anna Ostropolets and
Juan M. Banda and
William A. Baumgartner Jr. and
Richard D. Boyce and
Elena Casiraghi and
Ben D. Coleman and
Janine H. Collins and
Sara J. Deakyne Davies and
James A. Feinstein and
Melissa A. Haendel and
Asiyah Y. Lin and
Blake Martin and
Nicolas Matentzoglu and
Daniella Meeker and
Justin T. Reese and
Jessica Sinclair and
Sanya Bathla Taneja and
Katy E. Trinkley and
Nicole A. Vasilevsky and
Andrew E. Williams and
Xingman A. Zhang and
Peter N. Robinson and
Patrick B. Ryan and
George Hripcsak and
Tellen D. Bennett and
Lawrence E. Hunter and
Michael G. Kahn},
title = {Ontologizing Health Systems Data at Scale: Making Translational Discovery
a Reality},
journal = {CoRR},
volume = {abs/2209.04732},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2209.04732},
doi = {10.48550/ARXIV.2209.04732},
eprinttype = {arXiv},
eprint = {2209.04732},
timestamp = {Mon, 09 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2209-04732.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ChanVTMH21,
author = {Lauren E. Chan and
Nicole A. Vasilevsky and
Anne E. Thessen and
Julie A. McMurry and
Melissa A. Haendel},
title = {The landscape of nutri-informatics: a review of current resources
and challenges for integrative nutrition research},
journal = {Database J. Biol. Databases Curation},
volume = {2021},
year = {2021},
url = {https://doi.org/10.1093/database/baab003},
doi = {10.1093/DATABASE/BAAB003},
timestamp = {Mon, 06 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/ChanVTMH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JacksonMOVBBCCD21,
author = {Rebecca C. Jackson and
Nicolas Matentzoglu and
James A. Overton and
Randi Vita and
James P. Balhoff and
Pier Luigi Buttigieg and
Seth Carbon and
M{\'{e}}lanie Courtot and
Alexander D. Diehl and
Damion M. Dooley and
William D. Duncan and
Nomi L. Harris and
Melissa A. Haendel and
Suzanna E. Lewis and
Darren A. Natale and
David Osumi{-}Sutherland and
Alan Ruttenberg and
Lynn M. Schriml and
Barry Smith and
Christian J. Stoeckert Jr. and
Nicole A. Vasilevsky and
Ramona L. Walls and
Jie Zheng and
Christopher J. Mungall and
Bjoern Peters},
title = {{OBO} Foundry in 2021: operationalizing open data principles to evaluate
ontologies},
journal = {Database J. Biol. Databases Curation},
volume = {2021},
year = {2021},
url = {https://doi.org/10.1093/database/baab069},
doi = {10.1093/DATABASE/BAAB069},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JacksonMOVBBCCD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/0001GMCLVDBBBCC21,
author = {Sebastian K{\"{o}}hler and
Michael A. Gargano and
Nicolas Matentzoglu and
Leigh Carmody and
David Lewis{-}Smith and
Nicole A. Vasilevsky and
Daniel Danis and
Ganna Balagura and
Gareth Baynam and
Amy M. Brower and
Tiffany J. Callahan and
Christopher G. Chute and
Johanna L. Est and
Peter D. Galer and
Shiva Ganesan and
Matthias Griese and
Matthias Haimel and
Julia Pazmandi and
Marc Hanauer and
Nomi L. Harris and
Michael Hartnett and
Maximilian Hastreiter and
Fabian Hauck and
Yongqun He and
Tim Jeske and
Hugh Kearney and
Gerhard Kindle and
Christoph Klein and
Katrin Knoflach and
Roland Krause and
David Lagorce and
Julie A. McMurry and
Jillian A. Miller and
Monica C. Munoz{-}Torres and
Rebecca L. Peters and
Christina K. Rapp and
Ana Rath and
Shahmir A. Rind and
Avi Z. Rosenberg and
Michael M. Segal and
Markus G. Seidel and
Damian Smedley and
Tomer Talmy and
Yarlalu Thomas and
Samuel A. Wiafe and
Julie Xian and
Zafer Y{\"{u}}ksel and
Ingo Helbig and
Christopher J. Mungall and
Melissa A. Haendel and
Peter N. Robinson},
title = {The Human Phenotype Ontology in 2021},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D1207--D1217},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1043},
doi = {10.1093/NAR/GKAA1043},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/0001GMCLVDBBBCC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/ChanVTMDMH21,
author = {Lauren E. Chan and
Nicole A. Vasilevsky and
Anne E. Thessen and
Nicolas Matentzoglu and
William D. Duncan and
Christopher J. Mungall and
Melissa A. Haendel},
editor = {Janna Hastings and
Adrien Barton},
title = {A Semantic Model Leveraging Pattern-based Ontology Terms to Bridge
Environmental Exposures and Health Outcomes},
booktitle = {Proceedings of the International Conference on Biomedical Ontologies
2021 co-located with the Workshop on Ontologies for the Behavioural
and Social Sciences (OntoBess 2021) as part of the Bolzano Summer
of Knowledge {(BOSK} 2021), Bozen-Bolzano, Italy, 16-18 September,
2021},
series = {{CEUR} Workshop Proceedings},
volume = {3073},
pages = {48--55},
publisher = {CEUR-WS.org},
year = {2021},
url = {https://ceur-ws.org/Vol-3073/paper5.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/ChanVTMDMH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/VasilevskyTMJHR21,
author = {Nicole A. Vasilevsky and
Sabrina Toro and
Nicolas Matentzoglu and
Dazhi Jiao and
Melissa A. Haendel and
Peter N. Robinson and
Christopher J. Mungall},
editor = {Janna Hastings and
Adrien Barton},
title = {Reclassification of Infectious Disease in the Mondo Disease Ontology},
booktitle = {Proceedings of the International Conference on Biomedical Ontologies
2021 co-located with the Workshop on Ontologies for the Behavioural
and Social Sciences (OntoBess 2021) as part of the Bolzano Summer
of Knowledge {(BOSK} 2021), Bozen-Bolzano, Italy, 16-18 September,
2021},
series = {{CEUR} Workshop Proceedings},
volume = {3073},
pages = {104--109},
publisher = {CEUR-WS.org},
year = {2021},
url = {https://ceur-ws.org/Vol-3073/paper14.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/VasilevskyTMJHR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2112-07051,
author = {Nicolas Matentzoglu and
James P. Balhoff and
Susan M. Bello and
Chris Bizon and
Matthew H. Brush and
Tiffany J. Callahan and
Christopher G. Chute and
William D. Duncan and
Chris T. A. Evelo and
Davera Gabriel and
John Graybeal and
Alasdair J. G. Gray and
Benjamin M. Gyori and
Melissa A. Haendel and
Henriette Harmse and
Nomi L. Harris and
Ian Harrow and
Harshad Hegde and
Amelia L. Hoyt and
Charles Tapley Hoyt and
Dazhi Jiao and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Simon Jupp and
Hyeongsik Kim and
Sebastian K{\"{o}}hler and
Thomas Liener and
Qinqin Long and
James Malone and
James A. McLaughlin and
Julie A. McMurry and
Sierra A. T. Moxon and
Monica C. Munoz{-}Torres and
David Osumi{-}Sutherland and
James A. Overton and
Bjoern Peters and
Tim E. Putman and
N{\'{u}}ria Queralt{-}Rosinach and
Kent A. Shefchek and
Harold Solbrig and
Anne E. Thessen and
Tania Tudorache and
Nicole A. Vasilevsky and
Alex H. Wagner and
Christopher J. Mungall},
title = {A Simple Standard for Sharing Ontological Mappings {(SSSOM)}},
journal = {CoRR},
volume = {abs/2112.07051},
year = {2021},
url = {https://arxiv.org/abs/2112.07051},
eprinttype = {arXiv},
eprint = {2112.07051},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2112-07051.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShefchekHGMUBKC20,
author = {Kent A. Shefchek and
Nomi L. Harris and
Michael A. Gargano and
Nicolas Matentzoglu and
Deepak R. Unni and
Matthew H. Brush and
Dan Keith and
Tom Conlin and
Nicole A. Vasilevsky and
Xingmin Aaron Zhang and
James P. Balhoff and
Larry Babb and
Susan M. Bello and
Hannah Blau and
Yvonne M. Bradford and
Seth Carbon and
Leigh Carmody and
Lauren E. Chan and
Valentina Cipriani and
Alayne Cuzick and
Maria G. Della Rocca and
Nathan A. Dunn and
Shahim Essaid and
Petra Fey and
Christian A. Grove and
Jean{-}Philippe F. Gourdine and
Ada Hamosh and
Midori A. Harris and
Ingo Helbig and
Maureen E. Hoatlin and
Marcin P. Joachimiak and
Simon Jupp and
Kenneth B. Lett and
Suzanna E. Lewis and
Craig McNamara and
Zo{\"{e}} May Pendlington and
Clare Pilgrim and
Tim E. Putman and
Vida Ravanmehr and
Justin T. Reese and
Erin Rooney Riggs and
Sofia M. C. Robb and
Paola Roncaglia and
James Seager and
Erik Segerdell and
Morgan Similuk and
Andrea L. Storm and
Courtney Thaxon and
Anne E. Thessen and
Julius O. B. Jacobsen and
Julie A. McMurry and
Tudor Groza and
Sebastian K{\"{o}}hler and
Damian Smedley and
Peter N. Robinson and
Christopher J. Mungall and
Melissa A. Haendel and
Monica C. Munoz{-}Torres and
David Osumi{-}Sutherland},
title = {The Monarch Initiative in 2019: an integrative data and analytic platform
connecting phenotypes to genotypes across species},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D704--D715},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz997},
doi = {10.1093/NAR/GKZ997},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShefchekHGMUBKC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/VasilevskyEMHHR20,
author = {Nicole A. Vasilevsky and
Shahim Essaid and
Nicolas Matentzoglu and
Nomi L. Harris and
Melissa A. Haendel and
Peter N. Robinson and
Christopher J. Mungall},
editor = {Janna Hastings and
Frank Loebe},
title = {Mondo Disease Ontology: Harmonizing Disease Concepts Across the World
(short paper)},
booktitle = {Proceedings of the 11th International Conference on Biomedical Ontologies
{(ICBO)} joint with the 10th Workshop on Ontologies and Data in Life
Sciences {(ODLS)} and part of the Bolzano Summer of Knowledge (BoSK
2020), Virtual conference hosted in Bolzano, Italy, September 17,
2020},
series = {{CEUR} Workshop Proceedings},
volume = {2807},
pages = {1--2},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2807/abstractY.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/VasilevskyEMHHR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GourdineBVSKMMM19,
author = {Jean{-}Philippe F. Gourdine and
Matthew H. Brush and
Nicole A. Vasilevsky and
Kent A. Shefchek and
Sebastian K{\"{o}}hler and
Nicolas Matentzoglu and
Monica C. Munoz{-}Torres and
Julie A. McMurry and
Xingmin Aaron Zhang and
Peter N. Robinson and
Melissa A. Haendel},
title = {Representing glycophenotypes: semantic unification of glycobiology
resources for disease discovery},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz114},
year = {2019},
url = {https://doi.org/10.1093/database/baz114},
doi = {10.1093/DATABASE/BAZ114},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GourdineBVSKMMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KohlerCVJDGGHMM19,
author = {Sebastian K{\"{o}}hler and
Leigh Carmody and
Nicole A. Vasilevsky and
Julius O. B. Jacobsen and
Daniel Danis and
Jean{-}Philippe F. Gourdine and
Michael A. Gargano and
Nomi L. Harris and
Nicolas Matentzoglu and
Julie A. McMurry and
David Osumi{-}Sutherland and
Valentina Cipriani and
James P. Balhoff and
Tom Conlin and
Hannah Blau and
Gareth Baynam and
Richard Palmer and
Dylan Gratian and
Hugh J. S. Dawkins and
Michael Segal and
Anna C. Jansen and
Ahmed Muaz and
Willie H. Chang and
Jenna Bergerson and
Stanley J. F. Laulederkind and
Zafer Y{\"{u}}ksel and
Sergi Beltran and
Alexandra F. Freeman and
Panagiotis I. Sergouniotis and
Daniel Durkin and
Andrea L. Storm and
Marc Hanauer and
Michael Brudno and
Susan M. Bello and
Murat Sincan and
Kayli Rageth and
Matthew T. Wheeler and
Renske Oegema and
Halima Lourghi and
Maria G. Della Rocca and
Rachel Thompson and
Francisco Castellanos and
James Priest and
Charlotte Cunningham{-}Rundles and
Ayushi Hegde and
Ruth C. Lovering and
Catherine Hajek and
Annie Olry and
Luigi Notarangelo and
Morgan Similuk and
Xingmin Aaron Zhang and
David G{\'{o}}mez{-}Andr{\'{e}}s and
Hanns Lochm{\"{u}}ller and
H{\'{e}}l{\`{e}}ne Dollfus and
Sergio Rosenzweig and
Shruti Marwaha and
Ana Rath and
Kathleen Sullivan and
Cynthia L. Smith and
Joshua D. Milner and
Doroth{\'{e}}e Leroux and
Cornelius F. Boerkoel and
Amy Klion and
Melody C. Carter and
Tudor Groza and
Damian Smedley and
Melissa A. Haendel and
Chris Mungall and
Peter N. Robinson},
title = {Expansion of the Human Phenotype Ontology {(HPO)} knowledge base and
resources},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D1018--D1027},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1105},
doi = {10.1093/NAR/GKY1105},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KohlerCVJDGGHMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/ZhangYVGCCDJRPC19,
author = {Xingmin Aaron Zhang and
Amy Yates and
Nicole A. Vasilevsky and
Jean{-}Philippe F. Gourdine and
Tiffany J. Callahan and
Leigh C. Carmody and
Daniel Danis and
Marcin P. Joachimiak and
Vida Ravanmehr and
Emily R. Pfaff and
James Champion and
Kimberly Robasky and
Hao Xu and
Karamarie Fecho and
Nephi A. Walton and
Richard L. Zhu and
Justin Ramsdill and
Christopher J. Mungall and
Sebastian K{\"{o}}hler and
Melissa A. Haendel and
Clement J. McDonald and
Daniel J. Vreeman and
David B. Peden and
Tellen D. Bennett and
James A. Feinstein and
Blake Martin and
Adrianne L. Stefanski and
Lawrence E. Hunter and
Christopher G. Chute and
Peter N. Robinson},
title = {Semantic integration of clinical laboratory tests from electronic
health records for deep phenotyping and biomarker discovery},
journal = {npj Digit. Medicine},
volume = {2},
year = {2019},
url = {https://doi.org/10.1038/s41746-019-0110-4},
doi = {10.1038/S41746-019-0110-4},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/ZhangYVGCCDJRPC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/CarmodyZVMMR19,
author = {Leigh C. Carmody and
Xingmin Aaron Zhang and
Nicole A. Vasilevsky and
Christopher J. Mungall and
Nicolas Matentzoglu and
Peter N. Robinson},
editor = {Alexander D. Diehl and
William D. Duncan and
Gloria Sanso},
title = {Medical Action Ontology (MAxO)},
booktitle = {Proceedings of the 10th International Conference on Biomedical Ontology
{(ICBO} 2019), Buffalo, New York, USA, July 30 - August 2, 2019},
series = {{CEUR} Workshop Proceedings},
volume = {2931},
pages = {1},
publisher = {CEUR-WS.org},
year = {2019},
url = {https://ceur-ws.org/Vol-2931/ICBO\_2019\_paper\_60.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/CarmodyZVMMR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ro/HolmesVWBOGH19,
author = {Kristi L. Holmes and
Nicole A. Vasilevsky and
Marijane White and
Matthew H. Brush and
Lisa O'Keefe and
Karen Gutzman and
Melissa A. Haendel},
title = {Architecting Attribution: expanding the scope of academic credit},
booktitle = {Proceedings of Workshop on Research Objects (RO2019), San Diego, CA,
USA, September 24, 2019},
year = {2019},
url = {https://doi.org/10.5281/zenodo.3334688},
doi = {10.5281/ZENODO.3334688},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ro/HolmesVWBOGH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/GourdineVWBH18,
author = {Jean{-}Philippe F. Gourdine and
Nicole A. Vasilevsky and
Lilly Winfree and
Matthew H. Brush and
Melissa A. Haendel},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Expanding the Molecular Glycophenotype Ontology to include model organisms
and acquired diseases},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_38.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/GourdineVWBH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/BadaVBHH17,
author = {Michael Bada and
Nicole A. Vasilevsky and
William A. Baumgartner Jr. and
Melissa A. Haendel and
Lawrence E. Hunter},
title = {Gold-standard ontology-based anatomical annotation in the {CRAFT}
Corpus},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax087},
year = {2017},
url = {https://doi.org/10.1093/database/bax087},
doi = {10.1093/DATABASE/BAX087},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/BadaVBHH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MungallM0BBBCCD17,
author = {Christopher J. Mungall and
Julie A. McMurry and
Sebastian K{\"{o}}hler and
James P. Balhoff and
Charles D. Borromeo and
Matthew H. Brush and
Seth Carbon and
Tom Conlin and
Nathan A. Dunn and
Mark Engelstad and
Erin Foster and
Jean{-}Philippe F. Gourdine and
Julius O. B. Jacobsen and
Dan Keith and
Bryan Laraway and
Suzanna E. Lewis and
Jeremy NguyenXuan and
Kent A. Shefchek and
Nicole A. Vasilevsky and
Zhou Yuan and
Nicole L. Washington and
Harry Hochheiser and
Tudor Groza and
Damian Smedley and
Peter N. Robinson and
Melissa A. Haendel},
title = {The Monarch Initiative: an integrative data and analytic platform
connecting phenotypes to genotypes across species},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D712--D722},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1128},
doi = {10.1093/NAR/GKW1128},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MungallM0BBBCCD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/0001VEFMABBBBBB17,
author = {Sebastian K{\"{o}}hler and
Nicole A. Vasilevsky and
Mark Engelstad and
Erin Foster and
Julie A. McMurry and
S{\'{e}}gol{\`{e}}ne Aym{\'{e}} and
Gareth Baynam and
Susan M. Bello and
Cornelius F. Boerkoel and
Kym M. Boycott and
Michael Brudno and
Orion J. Buske and
Patrick F. Chinnery and
Valentina Cipriani and
Laureen E. Connell and
Hugh J. S. Dawkins and
Laura E. DeMare and
Andrew Devereau and
Bert B. A. de Vries and
Helen V. Firth and
Kathleen Freson and
Daniel Greene and
Ada Hamosh and
Ingo Helbig and
Courtney Hum and
Johanna J{\"{a}}hn and
Roger James and
Roland Krause and
Stanley J. F. Laulederkind and
Hanns Lochm{\"{u}}ller and
Gholson J. Lyon and
Soichi Ogishima and
Annie Olry and
Willem H. Ouwehand and
Nikolas Pontikos and
Ana Rath and
Franz Schaefer and
Richard H. Scott and
Michael Segal and
Panagiotis I. Sergouniotis and
Richard Sever and
Cynthia L. Smith and
Volker Straub and
Rachel Thompson and
Catherine Turner and
Ernest Turro and
Marijcke W. M. Veltman and
Tom Vulliamy and
Jing Yu and
Julie von Ziegenweidt and
Andreas Zankl and
Stephan Z{\"{u}}chner and
Tomasz Zemojtel and
Julius O. B. Jacobsen and
Tudor Groza and
Damian Smedley and
Christopher J. Mungall and
Melissa A. Haendel and
Peter N. Robinson},
title = {The Human Phenotype Ontology in 2017},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D865--D876},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1039},
doi = {10.1093/NAR/GKW1039},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/0001VEFMABBBBBB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/BalhoffBCCFHMRV17,
author = {James P. Balhoff and
Matthew H. Brush and
Laura Christopherson and
Sherri de Coronado and
Gilberto Fragoso and
Melissa A. Haendel and
Christopher J. Mungall and
Kimberly Robasky and
Nicole A. Vasilevsky and
Lawrence W. Wright},
editor = {Matthew Horridge and
Phillip Lord and
Jennifer D. Warrender},
title = {Tailoring the {NCI} Thesaurus for Use in The {OBO} Library},
booktitle = {Proceedings of the 8th International Conference on Biomedical Ontology
{(ICBO} 2017), Newcastle-upon-Tyne, United Kingdom, September 13th
- 15th, 2017},
series = {{CEUR} Workshop Proceedings},
volume = {2137},
publisher = {CEUR-WS.org},
year = {2017},
url = {https://ceur-ws.org/Vol-2137/ws\_ONCONTO\_paper\_4.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/BalhoffBCCFHMRV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/VasilevskyBMO0B17,
author = {Nicole A. Vasilevsky and
James P. Balhoff and
Christopher J. Mungall and
David Osumi{-}Sutherland and
Sebastian K{\"{o}}hler and
Susan M. Bello and
Cynthia L. Smith and
Peter N. Robinson and
Melissa A. Haendel},
editor = {Matthew Horridge and
Phillip Lord and
Jennifer D. Warrender},
title = {Aligning the Human Phenotype and Mammalian Phenotype Ontology using
Dead Simple Ontology Design Patterns},
booktitle = {Proceedings of the 8th International Conference on Biomedical Ontology
{(ICBO} 2017), Newcastle-upon-Tyne, United Kingdom, September 13th
- 15th, 2017},
series = {{CEUR} Workshop Proceedings},
volume = {2137},
publisher = {CEUR-WS.org},
year = {2017},
url = {https://ceur-ws.org/Vol-2137/paper\_22.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/VasilevskyBMO0B17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WangAAABBCCCCCD16,
author = {Qinghua Wang and
Shabbir S. Abdul and
Lara Almeida and
Sophia Ananiadou and
Yalbi I. Balderas{-}Mart{\'{\i}}nez and
Riza Batista{-}Navarro and
David Campos and
Lucy Chilton and
Hui{-}Jou Chou and
Gabriela Contreras and
Laurel Cooper and
Hong{-}Jie Dai and
Barbra Ferrell and
Juliane Fluck and
Socorro Gama{-}Castro and
Nancy George and
Georgios V. Gkoutos and
Afroza Khanam Irin and
Lars Juhl Jensen and
Silvia Jimenez and
Toni Rose Jue and
Ingrid M. Keseler and
Sumit Madan and
S{\'{e}}rgio Matos and
Peter McQuilton and
Marija Milacic and
Matthew E. Mort and
Jeyakumar Natarajan and
Evangelos Pafilis and
Emiliano Pereira and
Shruti Rao and
Fabio Rinaldi and
Karen Rothfels and
David Salgado and
Raquel M. Silva and
Onkar Singh and
Raymund Stefancsik and
Chu{-}Hsien Su and
Suresh Subramani and
Hamsa D. Tadepally and
Loukia Tsaprouni and
Nicole A. Vasilevsky and
Xiaodong Wang and
Andrew Chatr{-}aryamontri and
Stanley J. F. Laulederkind and
Sherri Matis{-}Mitchell and
Johanna R. McEntyre and
Sandra E. Orchard and
Sangya Pundir and
Raul Rodriguez{-}Esteban and
Kimberly Van Auken and
Zhiyong Lu and
Mary L. Schaeffer and
Cathy H. Wu and
Lynette Hirschman and
Cecilia N. Arighi},
title = {Overview of the interactive task in BioCreative {V}},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw119},
doi = {10.1093/DATABASE/BAW119},
timestamp = {Wed, 10 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/WangAAABBCCCCCD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/DiehlMBBDDHORSS16,
author = {Alexander D. Diehl and
Terrence F. Meehan and
Yvonne M. Bradford and
Matthew H. Brush and
Wasila M. Dahdul and
David S. Dougall and
Yongqun He and
David Osumi{-}Sutherland and
Alan Ruttenberg and
Sirarat Sarntivijai and
Ceri E. Van Slyke and
Nicole A. Vasilevsky and
Melissa A. Haendel and
Judith A. Blake and
Christopher J. Mungall},
title = {The Cell Ontology 2016: enhanced content, modularization, and ontology
interoperability},
journal = {J. Biomed. Semant.},
volume = {7},
pages = {44},
year = {2016},
url = {https://doi.org/10.1186/s13326-016-0088-7},
doi = {10.1186/S13326-016-0088-7},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/DiehlMBBDDHORSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/BandrowskiBGHKH16,
author = {Anita E. Bandrowski and
Matthew H. Brush and
Jeffrey S. Grethe and
Melissa A. Haendel and
David N. Kennedy and
Sean L. Hill and
Patrick R. Hof and
Maryann E. Martone and
Maaike Pols and
Serena S. Tan and
Nicole L. Washington and
Elena V. Zudilova{-}Seinstra and
Nicole A. Vasilevsky},
title = {The Resource Identification Initiative: {A} Cultural Shift in Publishing},
journal = {Neuroinformatics},
volume = {14},
number = {2},
pages = {169--182},
year = {2016},
url = {https://doi.org/10.1007/s12021-015-9284-3},
doi = {10.1007/S12021-015-9284-3},
timestamp = {Thu, 16 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ni/BandrowskiBGHKH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/BadaVHH16,
author = {Michael Bada and
Nicole A. Vasilevsky and
Melissa A. Haendel and
Lawrence Hunter},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {Gold-Standard Ontology-Based Annotation of Concepts in Biomedical
Text in the {CRAFT} Corpus: Updates and Extensions},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/IP08\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/BadaVHH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/ChibucosNMMOVBG16,
author = {Marcus C. Chibucos and
Suvarna Nadendla and
James B. Munro and
Elvira Mitraka and
Dustin Olley and
Nicole A. Vasilevsky and
Matthew H. Brush and
Michelle G. Giglio},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {Supporting Database Annotations and Beyond with the Evidence {\&}
Conclusion Ontology {(ECO)}},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/IP30\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/ChibucosNMMOVBG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/VasilevskyEFMR016,
author = {Nicole A. Vasilevsky and
Mark Engelstad and
Erin Foster and
Chris Mungall and
Peter N. Robinson and
Sebastian K{\"{o}}hler and
Melissa A. Haendel},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {Enhancing the Human Phenotype Ontology for Use by the Layperson},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/IT402\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/VasilevskyEFMR016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/BandrowskiBGHKHHMPTWZV15,
author = {Anita E. Bandrowski and
Matthew H. Brush and
Jeffrey S. Grethe and
Melissa A. Haendel and
David N. Kennedy and
Sean L. Hill and
Patrick R. Hof and
Maryann E. Martone and
Maaike Pols and
Serena S. Tan and
Nicole L. Washington and
Elena V. Zudilova{-}Seinstra and
Nicole A. Vasilevsky},
title = {The Resource Identification Initiative: {A} cultural shift in publishing},
journal = {F1000Research},
volume = {4},
pages = {134},
year = {2015},
url = {https://doi.org/10.12688/f1000research.6555.1},
doi = {10.12688/F1000RESEARCH.6555.1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/BandrowskiBGHKHHMPTWZV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeehanVMDHBD13,
author = {Terrence F. Meehan and
Nicole A. Vasilevsky and
Christopher J. Mungall and
David S. Dougall and
Melissa A. Haendel and
Judith A. Blake and
Alexander D. Diehl},
title = {Ontology based molecular signatures for immune cell types via gene
expression analysis},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {263},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-263},
doi = {10.1186/1471-2105-14-263},
timestamp = {Thu, 16 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MeehanVMDHBD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/HaendelTVHB13,
author = {Melissa A. Haendel and
Carlo Torniai and
Nicole A. Vasilevsky and
Scott Hoffmann and
Daniela Bourges{-}Waldegg},
editor = {Michel Dumontier and
Robert Hoehndorf and
Christopher J. O. Baker},
title = {eagle-i: ontology-driven federated search and data entry tools for
discovering biomedical research resources},
booktitle = {Proceedings of the 4th International Conference on Biomedical Ontology,
{ICBO} 2013, Montreal, Canada, July 7-12, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1060},
pages = {130--131},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1060/icbo2013\_submission\_54.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/HaendelTVHB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/VasilevskyJCTBSWSRH12,
author = {Nicole A. Vasilevsky and
Tenille Johnson and
Karen Corday and
Carlo Torniai and
Matthew H. Brush and
Erik Segerdell and
Melanie Wilson and
Chris Shaffer and
David Robinson and
Melissa A. Haendel},
title = {Research resources: curating the new eagle-i discovery system},
journal = {Database J. Biol. Databases Curation},
volume = {2012},
year = {2012},
url = {https://doi.org/10.1093/database/bar067},
doi = {10.1093/DATABASE/BAR067},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/VasilevskyJCTBSWSRH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/BrushVTJSH11,
author = {Matthew H. Brush and
Nicole A. Vasilevsky and
Carlo Torniai and
Tenille Johnson and
Chris Shaffer and
Melissa A. Haendel},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Developing a Reagent Application Ontology within the {OBO} Foundry
Framework},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper32.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/BrushVTJSH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/TorniaiBVSWJCSH11,
author = {Carlo Torniai and
Matthew H. Brush and
Nicole A. Vasilevsky and
Erik Segerdell and
Melanie Wilson and
Tenille Johnson and
Karen Corday and
Chris Shaffer and
Melissa A. Haendel},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Developing an Application Ontology for Biomedical Resource Annotation
and Retrieval: Challenges and Lessons Learned},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper14.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/TorniaiBVSWJCSH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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