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ORCIDBibTeX records: Lisa Tucker-Kellogg
@inproceedings{DBLP:conf/bcb/ChuaTB22,
author = {Huey{-}Eng Chua and
Lisa Tucker{-}Kellogg and
Sourav S. Bhowmick},
title = {ArcheGEO: towards improving relevance of gene expression omnibus search
results},
booktitle = {{BCB} '22: 13th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, Northbrook, Illinois,
USA, August 7 - 10, 2022},
pages = {4:1--4:10},
publisher = {{ACM}},
year = {2022},
url = {https://doi.org/10.1145/3535508.3545531},
doi = {10.1145/3535508.3545531},
timestamp = {Mon, 01 Aug 2022 11:48:53 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ChuaTB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/JagannathanHT21,
author = {N. Suhas Jagannathan and
Christopher W. V. Hogue and
Lisa Tucker{-}Kellogg},
title = {Computational modeling suggests binding-induced expansion of Epsin
disordered regions upon association with {AP2}},
journal = {PLoS Comput. Biol.},
volume = {17},
number = {1},
year = {2021},
url = {https://doi.org/10.1371/journal.pcbi.1008474},
doi = {10.1371/JOURNAL.PCBI.1008474},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/JagannathanHT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JagannathanIKWC20,
author = {N. Suhas Jagannathan and
Mario O. Ihsan and
Xiao Xuan Kin and
Roy E. Welsch and
Marie{-}V{\'{e}}ronique Cl{\'{e}}ment and
Lisa Tucker{-}Kellogg},
title = {Transcompp: understanding phenotypic plasticity by estimating Markov
transition rates for cell state transitions},
journal = {Bioinform.},
volume = {36},
number = {9},
pages = {2813--2820},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa021},
doi = {10.1093/BIOINFORMATICS/BTAA021},
timestamp = {Tue, 26 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JagannathanIKWC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/JagannathanHT20,
author = {N. Suhas Jagannathan and
Christopher W. V. Hogue and
Lisa Tucker{-}Kellogg},
title = {De novo Ensemble Modeling Suggests that AP2-Binding to Disordered
Regions Can Increase StericVolume of Epsin but Not Eps15},
booktitle = {Pacific Symposium on Biocomputing 2020, Fairmont Orchid, Hawaii, USA,
January 3-7, 2020},
pages = {183--194},
year = {2020},
url = {https://psb.stanford.edu/psb-online/proceedings/psb20/Jagannathan.pdf},
timestamp = {Fri, 13 Aug 2021 16:31:26 +0200},
biburl = {https://dblp.org/rec/conf/psb/JagannathanHT20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiVNWYT17,
author = {Huipeng Li and
Lakshmi Venkatraman and
Balakrishnan Chakrapani Narmada and
Jacob K. White and
Hanry Yu and
Lisa Tucker{-}Kellogg},
title = {Computational analysis reveals the coupling between bistability and
the sign of a feedback loop in a TGF-{\(\beta\)}1 activation model},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {91--99},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0508-z},
doi = {10.1186/S12918-017-0508-Z},
timestamp = {Mon, 08 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiVNWYT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChuaBT17,
author = {Huey{-}Eng Chua and
Sourav S. Bhowmick and
Lisa Tucker{-}Kellogg},
editor = {Nurit Haspel and
Lenore J. Cowen and
Amarda Shehu and
Tamer Kahveci and
Giuseppe Pozzi},
title = {{TINTIN:} Exploiting Target Features for Signaling Network Similarity
Computation and Ranking},
booktitle = {Proceedings of the 8th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2017, Boston,
MA, USA, August 20-23, 2017},
pages = {340--345},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3107411.3107470},
doi = {10.1145/3107411.3107470},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ChuaBT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NguyenHST16,
author = {Binh P. Nguyen and
Hans Heemskerk and
Peter T. C. So and
Lisa Tucker{-}Kellogg},
title = {Superpixel-based segmentation of muscle fibers in multi-channel microscopy},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-5}},
pages = {39--50},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0372-2},
doi = {10.1186/S12918-016-0372-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NguyenHST16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChuaBZT16,
author = {Huey{-}Eng Chua and
Sourav S. Bhowmick and
Jie Zheng and
Lisa Tucker{-}Kellogg},
title = {{TAPESTRY:} Network-centric Target Prioritization in Disease-related
Signaling Networks},
booktitle = {Proceedings of the 7th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2016, Seattle,
WA, USA, October 2-5, 2016},
pages = {108--117},
publisher = {{ACM}},
year = {2016},
url = {https://doi.org/10.1145/2975167.2975178},
doi = {10.1145/2975167.2975178},
timestamp = {Thu, 02 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ChuaBZT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdm/ChuaBTD16,
author = {Huey{-}Eng Chua and
Sourav S. Bhowmick and
Lisa Tucker{-}Kellogg and
C. Forbes Dewey Jr.},
editor = {Carlotta Domeniconi and
Francesco Gullo and
Francesco Bonchi and
Josep Domingo{-}Ferrer and
Ricardo Baeza{-}Yates and
Zhi{-}Hua Zhou and
Xindong Wu},
title = {{TENET:} {A} Machine Learning-Based System for Target Characterization
in Signaling Networks},
booktitle = {{IEEE} International Conference on Data Mining Workshops, {ICDM} Workshops
2016, December 12-15, 2016, Barcelona, Spain},
pages = {1288--1291},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/ICDMW.2016.0186},
doi = {10.1109/ICDMW.2016.0186},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdm/ChuaBTD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChuaBTDJ15,
author = {Huey{-}Eng Chua and
Sourav S. Bhowmick and
Lisa Tucker{-}Kellogg and
C. Forbes Dewey Jr.},
title = {{TENET:} topological feature-based target characterization in signalling
networks},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3306--3314},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv360},
doi = {10.1093/BIOINFORMATICS/BTV360},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChuaBTDJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/NimLWCT15,
author = {Tri Hieu Nim and
Le Luo and
Jacob K. White and
Marie{-}V{\'{e}}ronique Cl{\'{e}}ment and
Lisa Tucker{-}Kellogg},
title = {Non-canonical Activation of Akt in Serum-Stimulated Fibroblasts, Revealed
by Comparative Modeling of Pathway Dynamics},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {11},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004505},
doi = {10.1371/JOURNAL.PCBI.1004505},
timestamp = {Mon, 08 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/NimLWCT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/WangTNJTWY14,
author = {Junjie Wang and
Lisa Tucker{-}Kellogg and
Inn Chuan Ng and
Ruirui Jia and
P. S. Thiagarajan and
Jacob K. White and
Hanry Yu},
title = {The Self-Limiting Dynamics of TGF-{\(\beta\)} Signaling \emph{In Silico}
and \emph{In Vitro}, with Negative Feedback through {PPM1A} Upregulation},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {6},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003573},
doi = {10.1371/JOURNAL.PCBI.1003573},
timestamp = {Mon, 08 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/WangTNJTWY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChuaBT14,
author = {Huey{-}Eng Chua and
Sourav S. Bhowmick and
Lisa Tucker{-}Kellogg},
editor = {Pierre Baldi and
Wei Wang},
title = {One feature doesn't fit all: characterizing topological features of
targets in signaling networks},
booktitle = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
USA, September 20-23, 2014},
pages = {426--435},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2649387.2649424},
doi = {10.1145/2649387.2649424},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ChuaBT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiMHWPT13,
author = {Yuan Shi and
Gregory Mellier and
Sinong Huang and
Jacob K. White and
Shazib Pervaiz and
Lisa Tucker{-}Kellogg},
title = {Computational modelling of {LY303511} and TRAIL-induced apoptosis
suggests dynamic regulation of cFLIP},
journal = {Bioinform.},
volume = {29},
number = {3},
pages = {347--354},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/bts702},
doi = {10.1093/BIOINFORMATICS/BTS702},
timestamp = {Mon, 08 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiMHWPT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NimLCWT13,
author = {Tri Hieu Nim and
Le Luo and
Marie{-}V{\'{e}}ronique Cl{\'{e}}ment and
Jacob K. White and
Lisa Tucker{-}Kellogg},
title = {Systematic parameter estimation in data-rich environments for cell
signalling dynamics},
journal = {Bioinform.},
volume = {29},
number = {8},
pages = {1044--1051},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt083},
doi = {10.1093/BIOINFORMATICS/BTT083},
timestamp = {Mon, 08 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NimLCWT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NimWT13,
author = {Tri Hieu Nim and
Jacob K. White and
Lisa Tucker{-}Kellogg},
title = {{SPEDRE:} a web server for estimating rate parameters for cell signaling
dynamics in data-rich environments},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {187--191},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt459},
doi = {10.1093/NAR/GKT459},
timestamp = {Mon, 08 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NimWT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChuaBTD12,
author = {Huey{-}Eng Chua and
Sourav S. Bhowmick and
Lisa Tucker{-}Kellogg and
C. Forbes Dewey Jr.},
editor = {Sanjay Ranka and
Tamer Kahveci and
Mona Singh},
title = {{STEROID:} in silico heuristic target combination identification for
disease-related signaling networks},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 12, Orlando, FL, {USA} - October 08 - 10, 2012},
pages = {4--11},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2382936.2382937},
doi = {10.1145/2382936.2382937},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ChuaBTD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ihi/ChuaBTZDY12,
author = {Huey{-}Eng Chua and
Sourav S. Bhowmick and
Lisa Tucker{-}Kellogg and
Qing Zhao and
C. Forbes Dewey Jr. and
Hanry Yu},
editor = {Gang Luo and
Jiming Liu and
Christopher C. Yang},
title = {In silico identification of endo16 regulators in the sea urchin endomesoderm
gene regulatory network},
booktitle = {{ACM} International Health Informatics Symposium, {IHI} '12, Miami,
FL, USA, January 28-30, 2012},
pages = {131--140},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2110363.2110381},
doi = {10.1145/2110363.2110381},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ihi/ChuaBTZDY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ihi/ChuaBTWDY12,
author = {Huey{-}Eng Chua and
Sourav S. Bhowmick and
Lisa Tucker{-}Kellogg and
Yingqi Wang and
C. Forbes Dewey Jr. and
Hanry Yu},
editor = {Gang Luo and
Jiming Liu and
Christopher C. Yang},
title = {{PANI:} an interactive data-driven tool for target prioritization
in signaling networks},
booktitle = {{ACM} International Health Informatics Symposium, {IHI} '12, Miami,
FL, USA, January 28-30, 2012},
pages = {851--854},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2110363.2110471},
doi = {10.1145/2110363.2110471},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ihi/ChuaBTWDY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChuaZBDTY11,
author = {Huey{-}Eng Chua and
Qing Zhao and
Sourav S. Bhowmick and
C. Forbes Dewey Jr. and
Lisa Tucker{-}Kellogg and
Hanry Yu},
editor = {Robert Grossman and
Andrey Rzhetsky and
Sun Kim and
Wei Wang},
title = {Pani: a novel algorithm for fast discovery of putative target nodes
in signaling networks},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
2011},
pages = {284--288},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2147805.2147836},
doi = {10.1145/2147805.2147836},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ChuaZBDTY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/VenkatramanYBDT10,
author = {Lakshmi Venkatraman and
Hanry Yu and
Sourav S. Bhowmick and
C. Forbes Dewey Jr. and
Lisa Tucker{-}Kellogg},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {The Steady States and Dynamics of Urokinase-mediated Plasmin Activation},
booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
Hawaii, USA, 4-8 January 2010},
pages = {190--199},
publisher = {World Scientific Publishing},
year = {2010},
url = {http://psb.stanford.edu/psb-online/proceedings/psb10/venkatraman.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/VenkatramanYBDT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NighamTMVH08,
author = {Anshul Nigham and
Lisa Tucker{-}Kellogg and
Ivana Mihalek and
Chandra Verma and
David Hsu},
title = {pFlexAna: detecting conformational changes in remotely related proteins},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Web-Server-Issue},
pages = {246--251},
year = {2008},
url = {https://doi.org/10.1093/nar/gkn259},
doi = {10.1093/NAR/GKN259},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NighamTMVH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KohTHT07,
author = {Geoffrey Koh and
Lisa Tucker{-}Kellogg and
David Hsu and
P. S. Thiagarajan},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Composing Globally Consistent Pathway Parameter Estimates Through
Belief Propagation},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {420--430},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_39},
doi = {10.1007/978-3-540-74126-8\_39},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KohTHT07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/ndltd/TuckerKellogg02,
author = {Lisa Tucker{-}Kellogg},
title = {Systematic conformational search with constraint satisfaction},
school = {Massachusetts Institute of Technology, Cambridge, MA, {USA}},
year = {2002},
url = {https://hdl.handle.net/1721.1/8081},
timestamp = {Wed, 04 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/ndltd/TuckerKellogg02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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