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ORCIDBibTeX records: Nicholas J. Schork
@article{DBLP:journals/ploscb/RanganMBVJS23,
author = {Aaditya V. Rangan and
Caroline C. McGrouther and
Nivedita Bhadra and
Stephanie Venn{-}Watson and
Eric D. Jensen and
Nicholas J. Schork},
title = {A time-series analysis of blood-based biomarkers within a 25-year
longitudinal dolphin cohort},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {2},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1010890},
doi = {10.1371/JOURNAL.PCBI.1010890},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RanganMBVJS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fcomp/NiklesDMHS20,
author = {Jane Nikles and
Eric J. Daza and
Suzanne McDonald and
Eric B. Hekler and
Nicholas J. Schork},
title = {Editorial: Creating Evidence From Real World Patient Digital Data},
journal = {Frontiers Comput. Sci.},
volume = {2},
pages = {636996},
year = {2020},
url = {https://doi.org/10.3389/fcomp.2020.636996},
doi = {10.3389/FCOMP.2020.636996},
timestamp = {Tue, 26 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fcomp/NiklesDMHS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fdgth/HendricksonTSR20,
author = {Rebecca C. Hendrickson and
Ronald G. Thomas and
Nicholas J. Schork and
Murray A. Raskind},
title = {Optimizing Aggregated N-Of-1 Trial Designs for Predictive Biomarker
Validation: Statistical Methods and Theoretical Findings},
journal = {Frontiers Digit. Health},
volume = {2},
pages = {13},
year = {2020},
url = {https://doi.org/10.3389/fdgth.2020.00013},
doi = {10.3389/FDGTH.2020.00013},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fdgth/HendricksonTSR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BuckleyICS19,
author = {Alexandra R. Buckley and
Trey Ideker and
Hannah Carter and
Nicholas J. Schork},
title = {Rare variant phasing using paired tumor: normal sequence data},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {265:1--265:11},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2753-1},
doi = {10.1186/S12859-019-2753-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BuckleyICS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/ShahKKGHLRS19,
author = {Pratik Shah and
Francis Kendall and
Sean Khozin and
Ryan Goosen and
Jianying Hu and
Jason M. Laramie and
Michael Ringel and
Nicholas J. Schork},
title = {Artificial intelligence and machine learning in clinical development:
a translational perspective},
journal = {npj Digit. Medicine},
volume = {2},
year = {2019},
url = {https://doi.org/10.1038/s41746-019-0148-3},
doi = {10.1038/S41746-019-0148-3},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/ShahKKGHLRS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RanganMKSSZKYTB18,
author = {Aaditya V. Rangan and
Caroline C. McGrouther and
John Kelsoe and
Nicholas J. Schork and
Eli Stahl and
Qian Zhu and
Arjun Krishnan and
Vicky Yao and
Olga G. Troyanskaya and
Seda Bilaloglu and
Preeti Raghavan and
Sarah Bergen and
Anders Jur{\'{e}}us and
Mikael Landen},
title = {A loop-counting method for covariate-corrected low-rank biclustering
of gene-expression and genome-wide association study data},
journal = {PLoS Comput. Biol.},
volume = {14},
number = {5},
year = {2018},
url = {https://doi.org/10.1371/journal.pcbi.1006105},
doi = {10.1371/JOURNAL.PCBI.1006105},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/RanganMKSSZKYTB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BakkenCANHMLCMP17,
author = {Trygve E. Bakken and
Lindsay G. Cowell and
Brian D. Aevermann and
Mark Novotny and
Rebecca D. Hodge and
Jeremy A. Miller and
Alexandra Lee and
Ivan Chang and
Jamison M. McCorrison and
Bali Pulendran and
Yu Qian and
Nicholas J. Schork and
Roger S. Lasken and
Ed S. Lein and
Richard H. Scheuermann},
title = {Cell type discovery and representation in the era of high-content
single cell phenotyping},
journal = {{BMC} Bioinform.},
volume = {18},
number = {{S-17}},
pages = {7--16},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1977-1},
doi = {10.1186/S12859-017-1977-1},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BakkenCANHMLCMP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/AevermannMVHBMN17,
author = {Brian D. Aevermann and
Jamison M. McCorrison and
Pratap Venepally and
Rebecca D. Hodge and
Trygve E. Bakken and
Jeremy A. Miller and
Mark Novotny and
Danny N. Tran and
Francisco Diez{-}Fuertes and
Lena Christiansen and
Fan Zhang and
Frank Steemers and
Roger S. Lasken and
Ed S. Lein and
Nicholas J. Schork and
Richard H. Scheuermann},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Production of a Preliminary Quality Control Pipeline for Single Nuclei
RNA-Seq and Its Application in the Analysis of Cell Type Diversity
of Post-Mortem Human Brain Neocortex},
booktitle = {Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2017},
pages = {564--575},
year = {2017},
url = {http://psb.stanford.edu/psb-online/proceedings/psb17/aevermann.pdf},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/AevermannMVHBMN17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/JerniganBHABNTB16,
author = {Terry L. Jernigan and
Timothy T. Brown and
Donald J. Hagler Jr. and
Natacha Akshoomoff and
Hauke Bartsch and
Erik Newman and
Wesley K. Thompson and
Cinnamon S. Bloss and
Sarah S. Murray and
Nicholas J. Schork and
David N. Kennedy and
Joshua M. Kuperman and
Connor McCabe and
Yoonho Chung and
Ondrej Libiger and
Melanie Maddox and
B. J. Casey and
Linda Chang and
Thomas Ernst and
Jean A. Frazier and
Jeffrey R. Gruen and
Elizabeth R. Sowell and
Tal Kenet and
Walter E. Kaufmann and
Stewart Mostofsky and
David G. Amaral and
Anders M. Dale},
title = {The Pediatric Imaging, Neurocognition, and Genetics {(PING)} Data
Repository},
journal = {NeuroImage},
volume = {124},
pages = {1149--1154},
year = {2016},
url = {https://doi.org/10.1016/j.neuroimage.2015.04.057},
doi = {10.1016/J.NEUROIMAGE.2015.04.057},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/neuroimage/JerniganBHABNTB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StandishCLPTHLC15,
author = {Kristopher Standish and
Tristan M. Carland and
Glenn K. Lockwood and
Wayne Pfeiffer and
Mahidhar Tatineni and
C. Huang and
Sarah Lamberth and
Yauheniya Cherkas and
Carrie Brodmerkel and
Ed Jaeger and
Lance Smith and
Gunaretnam Rajagopal and
Mark Curran and
Nicholas J. Schork},
title = {Group-based variant calling leveraging next-generation supercomputing
for large-scale whole-genome sequencing studies},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {304:1--304:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0736-4},
doi = {10.1186/S12859-015-0736-4},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StandishCLPTHLC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BansalLTS11,
author = {Vikas Bansal and
Ondrej Libiger and
Ali Torkamani and
Nicholas J. Schork},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {An Application and Empirical Comparison of Statistical Analysis Methods
for Associating Rare Variants to a Complex Phenotype},
booktitle = {Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 3-7 January 2011},
pages = {76--87},
publisher = {World Scientific Publishing},
year = {2011},
url = {http://psb.stanford.edu/psb-online/proceedings/psb11/bansal.pdf},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/BansalLTS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/hij/SalemPRFGBSOB10,
author = {Rany M. Salem and
Braj Pandey and
Erin Richard and
Maple M. Fung and
Erin P. Garcia and
Victoria H. Brophy and
Nicholas J. Schork and
Daniel T. O'Connor and
Vibha Bhatnagar},
title = {The {VA} Hypertension Primary Care Longitudinal Cohort: Electronic
medical records in the post-genomic era},
journal = {Health Informatics J.},
volume = {16},
number = {4},
pages = {274--286},
year = {2010},
url = {https://doi.org/10.1177/1460458210380527},
doi = {10.1177/1460458210380527},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/hij/SalemPRFGBSOB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BhatiaBHSTFB10,
author = {Gaurav Bhatia and
Vikas Bansal and
Olivier Harismendy and
Nicholas J. Schork and
Eric J. Topol and
Kelly A. Frazer and
Vineet Bafna},
title = {A Covering Method for Detecting Genetic Associations between Rare
Variants and Common Phenotypes},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {10},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1000954},
doi = {10.1371/JOURNAL.PCBI.1000954},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/BhatiaBHSTFB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TorkamaniS09,
author = {Ali Torkamani and
Nicholas J. Schork},
title = {Prestige centrality-based functional outlier detection in gene expression
analysis},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2222--2228},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp388},
doi = {10.1093/BIOINFORMATICS/BTP388},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TorkamaniS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TorkamaniS08,
author = {Ali Torkamani and
Nicholas J. Schork},
title = {Predicting functional regulatory polymorphisms},
journal = {Bioinform.},
volume = {24},
number = {16},
pages = {1787--1792},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn311},
doi = {10.1093/BIOINFORMATICS/BTN311},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TorkamaniS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TorkamaniS07,
author = {Ali Torkamani and
Nicholas J. Schork},
title = {Accurate prediction of deleterious protein kinase polymorphisms},
journal = {Bioinform.},
volume = {23},
number = {21},
pages = {2918--2925},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm437},
doi = {10.1093/BIOINFORMATICS/BTM437},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TorkamaniS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CohenBCS99,
author = {Daniel Cohen and
Marta Blumenfeld and
Ilya Chumakov and
Nicholas J. Schork},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Whole genome association studies in humans (abstract)},
booktitle = {Proceedings of the Third Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1999, Lyon, France, April
11-14, 1999},
pages = {134},
publisher = {{ACM}},
year = {1999},
url = {https://doi.org/10.1145/299432.299469},
doi = {10.1145/299432.299469},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/CohenBCS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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