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ORCIDBibTeX records: Reinhard Schneider 0002
@article{DBLP:journals/biodb/VegaOGSS24,
author = {Carlos Vega and
Marek Ostaszewski and
Valentin Grou{\`{e}}s and
Reinhard Schneider and
Venkata P. Satagopam},
title = {BioKC: a collaborative platform for curation and annotation of molecular
interactions},
journal = {Database J. Biol. Databases Curation},
volume = {2024},
year = {2024},
url = {https://doi.org/10.1093/database/baae013},
doi = {10.1093/DATABASE/BAAE013},
timestamp = {Mon, 22 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/VegaOGSS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/GawronHPPEFCSHAGSSDFO23,
author = {Piotr Gawron and
David Hoksza and
Janet Pi{\~{n}}ero and
Mar{\'{\i}}a Pe{\~{n}}a{-}Chilet and
Marina Esteban{-}Medina and
Jose Luis Fernandez{-}Rueda and
Vincenza Colonna and
Ewa Smula and
Laurent Heirendt and
Fran{\c{c}}ois Ancien and
Valentin Grou{\`{e}}s and
Venkata P. Satagopam and
Reinhard Schneider and
Joaqu{\'{\i}}n Dopazo and
Laura I. Furlong and
Marek Ostaszewski},
title = {Visualization of automatically combined disease maps and pathway diagrams
for rare diseases},
journal = {Frontiers Bioinform.},
volume = {3},
year = {2023},
url = {https://doi.org/10.3389/fbinf.2023.1101505},
doi = {10.3389/FBINF.2023.1101505},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fbinf/GawronHPPEFCSHAGSSDFO23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/HemedanSO23,
author = {Ahmed Abdelmonem Hemedan and
Reinhard Schneider and
Marek Ostaszewski},
title = {Applications of Boolean modeling to study the dynamics of a complex
disease and therapeutics responses},
journal = {Frontiers Bioinform.},
volume = {3},
year = {2023},
url = {https://doi.org/10.3389/fbinf.2023.1189723},
doi = {10.3389/FBINF.2023.1189723},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fbinf/HemedanSO23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/MazeinABRWNADGSGKSO23,
author = {Alexander Mazein and
Marcio Luis Acencio and
Irina Balaur and
Adrien Rougny and
Danielle Welter and
Anna Niarakis and
Diana Ramirez Ardila and
Ugur Dogrusoz and
Piotr Gawron and
Venkata P. Satagopam and
Wei Gu and
Andreas Kremer and
Reinhard Schneider and
Marek Ostaszewski},
title = {A guide for developing comprehensive systems biology maps of disease
mechanisms: planning, construction and maintenance},
journal = {Frontiers Bioinform.},
volume = {3},
year = {2023},
url = {https://doi.org/10.3389/fbinf.2023.1197310},
doi = {10.3389/FBINF.2023.1197310},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fbinf/MazeinABRWNADGSGKSO23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jms/VegaSS23,
author = {Carlos Vega and
Reinhard Schneider and
Venkata P. Satagopam},
title = {Analysis: Flawed Datasets of Monkeypox Skin Images},
journal = {J. Medical Syst.},
volume = {47},
number = {1},
pages = {37},
year = {2023},
url = {https://doi.org/10.1007/s10916-023-01928-1},
doi = {10.1007/S10916-023-01928-1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jms/VegaSS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cordi/GuTAWJLEBS0V23,
author = {Wei Gu and
Christophe Trefois and
Pinar Alper and
Danielle Welter and
Yohan Jarosz and
Jacek Lebioda and
Linda Ebermann and
Regina Becker and
Venkata P. Satagopam and
Reinhard Schneider and
Bert Verdonck},
editor = {York Sure{-}Vetter and
Carole A. Goble},
title = {{RDM} Services at the Luxembourg National Data Service},
booktitle = {1st Conference on Research Data Infrastructure - Connecting Communities,
CoRDI 2023, Karlsruhe, Germany, September 12-14, 2023},
publisher = {{TIB} Open Publishing},
year = {2023},
url = {https://doi.org/10.52825/cordi.v1i.247},
doi = {10.52825/CORDI.V1I.247},
timestamp = {Sat, 21 Oct 2023 10:46:27 +0200},
biburl = {https://dblp.org/rec/conf/cordi/GuTAWJLEBS0V23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KratochvilHWPAN22,
author = {Miroslav Kratochv{\'{\i}}l and
Laurent Heirendt and
St Elmo Wilken and
Taneli Pusa and
Sylvain Arreckx and
Alberto Noronha and
Marvin van Aalst and
Venkata P. Satagopam and
Oliver Ebenh{\"{o}}h and
Reinhard Schneider and
Christophe Trefois and
Wei Gu},
title = {COBREXA.jl: constraint-based reconstruction and exascale analysis},
journal = {Bioinform.},
volume = {38},
number = {4},
pages = {1171--1172},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btab782},
doi = {10.1093/BIOINFORMATICS/BTAB782},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KratochvilHWPAN22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwbbio/VegaKSS22,
author = {Carlos Vega and
Miroslav Kratochv{\'{\i}}l and
Venkata P. Satagopam and
Reinhard Schneider},
editor = {Ignacio Rojas and
Olga Valenzuela and
Fernando Rojas and
Luis Javier Herrera and
Francisco M. Ortu{\~{n}}o},
title = {Translational Challenges of Biomedical Machine Learning Solutions
in Clinical and Laboratory Settings},
booktitle = {Bioinformatics and Biomedical Engineering - 9th International Work-Conference,
{IWBBIO} 2022, Maspalomas, Gran Canaria, Spain, June 27-30, 2022,
Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {13347},
pages = {353--358},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-07802-6\_30},
doi = {10.1007/978-3-031-07802-6\_30},
timestamp = {Tue, 26 Dec 2023 17:13:20 +0100},
biburl = {https://dblp.org/rec/conf/iwbbio/VegaKSS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HokszaGOHS21,
author = {David Hoksza and
Piotr Gawron and
Marek Ostaszewski and
Jan Hasenauer and
Reinhard Schneider},
title = {Closing the gap between formats for storing layout information in
systems biology},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {608},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa030},
doi = {10.1093/BIB/BBAA030},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/HokszaGOHS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MazeinRKSOS21,
author = {Alexander Mazein and
Adrien Rougny and
Jonathan R. Karr and
Julio Saez{-}Rodriguez and
Marek Ostaszewski and
Reinhard Schneider},
title = {Reusability and composability in process description maps: {RAS-RAF-MEK-ERK}
signalling},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab103},
doi = {10.1093/BIB/BBAB103},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/MazeinRKSOS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KaratzasBPSP21,
author = {Evangelos Karatzas and
Fotis A. Baltoumas and
Nikolaos A. Panayiotou and
Reinhard Schneider and
Georgios A. Pavlopoulos},
title = {Arena3Dweb: interactive 3D visualization of multilayered networks},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Webserver-Issue},
pages = {36--45},
year = {2021},
url = {https://doi.org/10.1093/nar/gkab278},
doi = {10.1093/NAR/GKAB278},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KaratzasBPSP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BernhoferDKSHLO21,
author = {Michael Bernhofer and
Christian Dallago and
Timothy Karl and
Venkata P. Satagopam and
Michael Heinzinger and
Maria Littmann and
Tobias Olenyi and
Jiajun Qiu and
Konstantin Sch{\"{u}}tze and
Guy Yachdav and
Haim Ashkenazy and
Nir Ben{-}Tal and
Yana Bromberg and
Tatyana Goldberg and
L{\'{a}}szl{\'{o}} Kaj{\'{a}}n and
Se{\'{a}}n I. O'Donoghue and
Chris Sander and
Andrea Schafferhans and
Avner Schlessinger and
Gerrit Vriend and
Milot Mirdita and
Piotr Gawron and
Wei Gu and
Yohan Jarosz and
Christophe Trefois and
Martin Steinegger and
Reinhard Schneider and
Burkhard Rost},
title = {PredictProtein - Predicting Protein Structure and Function for 29
Years},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Webserver-Issue},
pages = {535--540},
year = {2021},
url = {https://doi.org/10.1093/nar/gkab354},
doi = {10.1093/NAR/GKAB354},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BernhoferDKSHLO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HokszaGOHS20,
author = {David Hoksza and
Piotr Gawron and
Marek Ostaszewski and
Jan Hasenauer and
Reinhard Schneider},
title = {Closing the gap between formats for storing layout information in
systems biology},
journal = {Briefings Bioinform.},
volume = {21},
number = {4},
pages = {1249--1260},
year = {2020},
url = {https://doi.org/10.1093/bib/bbz067},
doi = {10.1093/BIB/BBZ067},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/HokszaGOHS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PiereckOBDSBB20,
author = {Bruna Piereck and
Marx Oliveira{-}Lima and
Ana Maria Benko{-}Iseppon and
Sarah Diehl and
Reinhard Schneider and
Ana Christina Brasileiro{-}Vidal and
Adriano Barbosa{-}Silva},
title = {{LAITOR4HPC:} {A} text mining pipeline based on {HPC} for building
interaction networks},
journal = {{BMC} Bioinform.},
volume = {21},
number = {1},
pages = {365},
year = {2020},
url = {https://doi.org/10.1186/s12859-020-03620-4},
doi = {10.1186/S12859-020-03620-4},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PiereckOBDSBB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/OstaszewskiGKMZ19,
author = {Marek Ostaszewski and
Stephan Gebel and
Inna Kuperstein and
Alexander Mazein and
Andrei Yu. Zinovyev and
Ugur Dogrusoz and
Jan Hasenauer and
Ronan M. T. Fleming and
Nicolas Le Nov{\`{e}}re and
Piotr Gawron and
Thomas S. Ligon and
Anna Niarakis and
David P. Nickerson and
Daniel Weindl and
Rudi Balling and
Emmanuel Barillot and
Charles Auffray and
Reinhard Schneider},
title = {Community-driven roadmap for integrated disease maps},
journal = {Briefings Bioinform.},
volume = {20},
number = {2},
pages = {659--670},
year = {2019},
url = {https://doi.org/10.1093/bib/bby024},
doi = {10.1093/BIB/BBY024},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/OstaszewskiGKMZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HokszaGOSS19,
author = {David Hoksza and
Piotr Gawron and
Marek Ostaszewski and
Ewa Smula and
Reinhard Schneider},
title = {{MINERVA} {API} and plugins: opening molecular network analysis and
visualization to the community},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4496--4498},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz286},
doi = {10.1093/BIOINFORMATICS/BTZ286},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HokszaGOSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuYSVHSBSLLGHR19,
author = {Wei Gu and
Reha Yildirimman and
Emmanuel Van der Stuyft and
Denny Verbeeck and
Sascha Herzinger and
Venkata P. Satagopam and
Adriano Barbosa{-}Silva and
Reinhard Schneider and
Bodo M. H. Lange and
Hans Lehrach and
Yike Guo and
David Henderson and
Anthony Rowe},
title = {Data and knowledge management in translational research: implementation
of the eTRIKS platform for the {IMI} OncoTrack consortium},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {164:1--164:11},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2748-y},
doi = {10.1186/S12859-019-2748-Y},
timestamp = {Mon, 22 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GuYSVHSBSLLGHR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NoronhaMJGSGDKM19,
author = {Alberto Noronha and
Jennifer Modamio and
Yohan Jarosz and
Elisabeth Guerard and
Nicolas Sompairac and
German A. Preciat Gonzalez and
Anna Dr{\"{o}}fn Dan{\'{\i}}elsd{\'{o}}ttir and
Max Krecke and
Diane Merten and
Hulda S. Haraldsd{\'{o}}ttir and
Almut Heinken and
Laurent Heirendt and
Stefan{\'{\i}}a Magn{\'{u}}sd{\'{o}}ttir and
Dmitry A. Ravcheev and
Swagatika Sahoo and
Piotr Gawron and
Lucia Friscioni and
Beatriz Garcia Santa Cruz and
Mabel Prendergast and
Alberto Puente and
Mariana Rodrigues and
Akansha Roy and
Mouss Rouquaya and
Luca Wiltgen and
Alise Zagare and
Elisabeth John and
Maren Krueger and
Inna Kuperstein and
Andrei Yu. Zinovyev and
Reinhard Schneider and
Ronan M. T. Fleming and
Ines Thiele},
title = {The Virtual Metabolic Human database: integrating human and gut microbiome
metabolism with nutrition and disease},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D614--D624},
year = {2019},
url = {https://doi.org/10.1093/nar/gky992},
doi = {10.1093/NAR/GKY992},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NoronhaMJGSGDKM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HokszaGOS18,
author = {David Hoksza and
Piotr Gawron and
Marek Ostaszewski and
Reinhard Schneider},
title = {MolArt: a molecular structure annotation and visualization tool},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4127--4128},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty489},
doi = {10.1093/BIOINFORMATICS/BTY489},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HokszaGOS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OstaszewskiKDSB18,
author = {Marek Ostaszewski and
Emmanuel Kieffer and
Gr{\'{e}}goire Danoy and
Reinhard Schneider and
Pascal Bouvry},
title = {Clustering approaches for visual knowledge exploration in molecular
interaction networks},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {308:1--308:15},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2314-z},
doi = {10.1186/S12859-018-2314-Z},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OstaszewskiKDSB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/sp/NielsenDJK0TB18,
author = {Sune S. Nielsen and
Gr{\'{e}}goire Danoy and
Wiktor Jurkowski and
Roland Krause and
Reinhard Schneider and
El{-}Ghazali Talbi and
Pascal Bouvry},
editor = {Rafael Mart{\'{\i}} and
Panos M. Pardalos and
Mauricio G. C. Resende},
title = {Evolutionary Algorithms for the Inverse Protein Folding Problem},
booktitle = {Handbook of Heuristics},
pages = {999--1023},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-07124-4\_59},
doi = {10.1007/978-3-319-07124-4\_59},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/sp/NielsenDJK0TB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NoronhaDGJJJGBS17,
author = {Alberto Noronha and
Anna Dr{\"{o}}fn Dan{\'{\i}}elsd{\'{o}}ttir and
Piotr Gawron and
Freyr J{\'{o}}hannsson and
Soff{\'{\i}}a J{\'{o}}nsd{\'{o}}ttir and
Sindri Jarlsson and
J{\'{o}}n P{\'{e}}tur Gunnarsson and
Sigur{\dh}ur Brynj{\'{o}}lfsson and
Reinhard Schneider and
Ines Thiele and
Ronan M. T. Fleming},
title = {ReconMap: an interactive visualization of human metabolism},
journal = {Bioinform.},
volume = {33},
number = {4},
pages = {605--607},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btw667},
doi = {10.1093/BIOINFORMATICS/BTW667},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NoronhaDGJJJGBS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HerzingerGSERBS17,
author = {Sascha Herzinger and
Wei Gu and
Venkata P. Satagopam and
Serge Eifes and
Kavita Rege and
Adriano Barbosa{-}Silva and
Reinhard Schneider},
title = {SmartR: an open-source platform for interactive visual analytics for
translational research data},
journal = {Bioinform.},
volume = {33},
number = {14},
pages = {2229--2231},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx137},
doi = {10.1093/BIOINFORMATICS/BTX137},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HerzingerGSERBS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/dils/2017,
editor = {Marcos Da Silveira and
C{\'{e}}dric Pruski and
Reinhard Schneider},
title = {Data Integration in the Life Sciences - 12th International Conference,
{DILS} 2017, Luxembourg, Luxembourg, November 14-15, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10649},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-69751-2},
doi = {10.1007/978-3-319-69751-2},
isbn = {978-3-319-69750-5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dils/2017.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1712-05236,
author = {Laurent Heirendt and
Sylvain Arreckx and
Christophe Trefois and
Yohan Yarosz and
Maharshi Vyas and
Venkata P. Satagopam and
Reinhard Schneider and
Ines Thiele and
Ronan M. T. Fleming},
title = {{ARTENOLIS:} Automated Reproducibility and Testing Environment for
Licensed Software},
journal = {CoRR},
volume = {abs/1712.05236},
year = {2017},
url = {http://arxiv.org/abs/1712.05236},
eprinttype = {arXiv},
eprint = {1712.05236},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1712-05236.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bigdata/SatagopamGEGOGB16,
author = {Venkata P. Satagopam and
Wei Gu and
Serge Eifes and
Piotr Gawron and
Marek Ostaszewski and
Stephan Gebel and
Adriano Barbosa{-}Silva and
Rudi Balling and
Reinhard Schneider},
title = {Integration and Visualization of Translational Medicine Data for Better
Understanding of Human Diseases},
journal = {Big Data},
volume = {4},
number = {2},
pages = {97--108},
year = {2016},
url = {https://doi.org/10.1089/big.2015.0057},
doi = {10.1089/BIG.2015.0057},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bigdata/SatagopamGEGOGB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PapanikolaouPPT15,
author = {Nikolas Papanikolaou and
Georgios A. Pavlopoulos and
Evangelos Pafilis and
Theodosios Theodosiou and
Reinhard Schneider and
Venkata P. Satagopam and
Christos A. Ouzounis and
Aristides G. Eliopoulos and
Vasilis J. Promponas and
Ioannis Iliopoulos},
title = {BioTextQuest+: a knowledge integration platform for literature mining
and concept discovery},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {979},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv029},
doi = {10.1093/BIOINFORMATICS/BTV029},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PapanikolaouPPT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Glaab015,
author = {Enrico Glaab and
Reinhard Schneider},
title = {RepExplore: addressing technical replicate variance in proteomics
and metabolomics data analysis},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2235--2237},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv127},
doi = {10.1093/BIOINFORMATICS/BTV127},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Glaab015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/evoW/NielsenDJLSTB15,
author = {Sune S. Nielsen and
Gr{\'{e}}goire Danoy and
Wiktor Jurkowski and
Juan Luis Jim{\'{e}}nez Laredo and
Reinhard Schneider and
El{-}Ghazali Talbi and
Pascal Bouvry},
editor = {Antonio Miguel Mora and
Giovanni Squillero},
title = {A Novel Multi-objectivisation Approach for Optimising the Protein
Inverse Folding Problem},
booktitle = {Applications of Evolutionary Computation - 18th European Conference,
EvoApplications 2015, Copenhagen, Denmark, April 8-10, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9028},
pages = {14--25},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16549-3\_2},
doi = {10.1007/978-3-319-16549-3\_2},
timestamp = {Sun, 02 Jun 2019 21:25:15 +0200},
biburl = {https://dblp.org/rec/conf/evoW/NielsenDJLSTB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Secrier014,
author = {Maria Secrier and
Reinhard Schneider},
title = {Visualizing time-related data in biology, a review},
journal = {Briefings Bioinform.},
volume = {15},
number = {5},
pages = {771--782},
year = {2014},
url = {https://doi.org/10.1093/bib/bbt021},
doi = {10.1093/BIB/BBT021},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/Secrier014.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/BinderPTSO0J14,
author = {Janos X. Binder and
Sune Pletscher{-}Frankild and
Kalliopi Tsafou and
Christian Stolte and
Se{\'{a}}n I. O'Donoghue and
Reinhard Schneider and
Lars Juhl Jensen},
title = {{COMPARTMENTS:} unification and visualization of protein subcellular
localization evidence},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau012},
doi = {10.1093/DATABASE/BAU012},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/BinderPTSO0J14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PapanikolaouPPT0SOEPI14,
author = {Nikolas Papanikolaou and
Georgios A. Pavlopoulos and
Evangelos Pafilis and
Theodosios Theodosiou and
Reinhard Schneider and
Venkata P. Satagopam and
Christos A. Ouzounis and
Aristides G. Eliopoulos and
Vasilis J. Promponas and
Ioannis Iliopoulos},
title = {BioTextQuest\({}^{\mbox{+}}\): a knowledge integration platform for
literature mining and concept discovery},
journal = {Bioinform.},
volume = {30},
number = {22},
pages = {3249--3256},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu524},
doi = {10.1093/BIOINFORMATICS/BTU524},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PapanikolaouPPT0SOEPI14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YachdavKKHGHHSRBRAPSB0VSBR14,
author = {Guy Yachdav and
Edda Kloppmann and
L{\'{a}}szl{\'{o}} Kaj{\'{a}}n and
Maximilian Hecht and
Tatyana Goldberg and
Tobias Hamp and
Peter H{\"{o}}nigschmid and
Andrea Schafferhans and
Manfred Roos and
Michael Bernhofer and
Lothar Richter and
Haim Ashkenazy and
Marco Punta and
Avner Schlessinger and
Yana Bromberg and
Reinhard Schneider and
Gerrit Vriend and
Chris Sander and
Nir Ben{-}Tal and
Burkhard Rost},
title = {PredictProtein - an open resource for online prediction of protein
structural and functional features},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Webserver-Issue},
pages = {337--343},
year = {2014},
url = {https://doi.org/10.1093/nar/gku366},
doi = {10.1093/NAR/GKU366},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/YachdavKKHGHHSRBRAPSB0VSBR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/DaveySSVB0B14,
author = {Norman E. Davey and
Venkata P. Satagopam and
Salvador Santiago{-}Mozos and
Carlos Villacorta{-}Martin and
Tanmay A. M. Bharat and
Reinhard Schneider and
John A. G. Briggs},
title = {The {HIV} Mutation Browser: {A} Resource for Human Immunodeficiency
Virus Mutagenesis and Polymorphism Data},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {12},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003951},
doi = {10.1371/JOURNAL.PCBI.1003951},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/DaveySSVB0B14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PavlopoulosOISM0AI13,
author = {Georgios A. Pavlopoulos and
Anastasis Oulas and
Ernesto Iacucci and
Alejandro Sifrim and
Yves Moreau and
Reinhard Schneider and
Jan Aerts and
Ioannis Iliopoulos},
title = {Unraveling genomic variation from next generation sequencing data},
journal = {BioData Min.},
volume = {6},
pages = {13},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-13},
doi = {10.1186/1756-0381-6-13},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/PavlopoulosOISM0AI13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JimenezAB13,
author = {Rafael C. Jim{\'{e}}nez and
Juan P. Albar and
Jong Bhak and
Marie{-}Claude Blatter and
Thomas Blicher and
Michelle D. Brazas and
Catherine Brooksbank and
Aidan Budd and
Javier De Las Rivas and
Jacqueline Dreyer and
Marc A. van Driel and
Michael J. Dunn and
Pedro L. Fernandes and
Celia W. G. van Gelder and
Henning Hermjakob and
Vassilios Ioannidis and
David Phillip Judge and
Pascal Kahlem and
Eija Korpelainen and
Hans{-}Joachim Kraus and
Jane E. Loveland and
Christine Mayer and
Jennifer McDowall and
Federico Mor{\'{a}}n and
Nicola J. Mulder and
Tommi H. Nyr{\"{o}}nen and
Kristian Rother and
Gustavo A. Salazar and
Reinhard Schneider and
Allegra Via and
Jose M. Villaveces and
Ping Yu and
Maria Victoria Schneider and
Teresa K. Attwood and
Manuel Corpas},
title = {iAnn: an event sharing platform for the life sciences},
journal = {Bioinform.},
volume = {29},
number = {15},
pages = {1919--1921},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt306},
doi = {10.1093/BIOINFORMATICS/BTT306},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JimenezAB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/PafilisPSPHAJ0I13,
author = {Evangelos Pafilis and
Georgios A. Pavlopoulos and
Venkata P. Satagopam and
Nikolas Papanikolaou and
Heiko Horn and
Christos Arvanitidis and
Lars Juhl Jensen and
Reinhard Schneider and
Ioannis Iliopoulos},
title = {OnTheFly 2.0: {A} tool for automatic annotation of files and biological
information extraction},
booktitle = {13th {IEEE} International Conference on BioInformatics and BioEngineering,
{BIBE} 2013, Chania, Greece, November 10-13, 2013},
pages = {1--4},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBE.2013.6701679},
doi = {10.1109/BIBE.2013.6701679},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/PafilisPSPHAJ0I13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SoldatosOSBPWSS12,
author = {Theodoros G. Soldatos and
Se{\'{a}}n I. O'Donoghue and
Venkata P. Satagopam and
Adriano Barbosa{-}Silva and
Georgios A. Pavlopoulos and
Ana Carolina Wanderley{-}Nogueira and
Nina da Mota Soares{-}Cavalcanti and
Reinhard Schneider},
title = {Caipirini: using gene sets to rank literature},
journal = {BioData Min.},
volume = {5},
pages = {1},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-1},
doi = {10.1186/1756-0381-5-1},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/SoldatosOSBPWSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GlaabS12,
author = {Enrico Glaab and
Reinhard Schneider},
title = {PathVar: analysis of gene and protein expression variance in cellular
pathways using microarray data},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {446--447},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr656},
doi = {10.1093/BIOINFORMATICS/BTR656},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GlaabS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GlaabBKSV12,
author = {Enrico Glaab and
Ana{\"{\i}}s Baudot and
Natalio Krasnogor and
Reinhard Schneider and
Alfonso Valencia},
title = {EnrichNet: network-based gene set enrichment analysis},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {451--457},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts389},
doi = {10.1093/BIOINFORMATICS/BTS389},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GlaabBKSV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IacucciTPPMSM12,
author = {Ernesto Iacucci and
L{\'{e}}on{-}Charles Tranchevent and
Dusan Popovic and
Georgios A. Pavlopoulos and
Bart De Moor and
Reinhard Schneider and
Yves Moreau},
title = {ReLiance: a machine learning and literature-based prioritization of
receptor - ligand pairings},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {569--574},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts391},
doi = {10.1093/BIOINFORMATICS/BTS391},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IacucciTPPMSM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RostGLLMMSHK12,
author = {Burkhard Rost and
Terry Gaasterland and
Thomas Lengauer and
Michal Linial and
Scott Markel and
B. J. Morrison McKay and
Reinhard Schneider and
Paul Horton and
Janet Kelso},
title = {Paving the future: finding suitable {ISMB} venues},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2556--2559},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts420},
doi = {10.1093/BIOINFORMATICS/BTS420},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RostGLLMMSHK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SecrierPAS12,
author = {Maria Secrier and
Georgios A. Pavlopoulos and
Jan Aerts and
Reinhard Schneider},
title = {Arena3D: visualizing time-driven phenotypic differences in biological
systems},
journal = {{BMC} Bioinform.},
volume = {13},
pages = {45},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-45},
doi = {10.1186/1471-2105-13-45},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SecrierPAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IacucciTPPMSM12,
author = {Ernesto Iacucci and
L{\'{e}}on{-}Charles Tranchevent and
Dusan Popovic and
Georgios A. Pavlopoulos and
Bart De Moor and
Reinhard Schneider and
Yves Moreau},
title = {A bioinformatics e-dating story: computational prediction and prioritization
of receptor-ligand pairs},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-18}},
pages = {A7},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S18-A7},
doi = {10.1186/1471-2105-13-S18-A7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/IacucciTPPMSM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jclinbioinf/AzuajeHTWSMS12,
author = {Francisco Azuaje and
Micha{\"{e}}l Heymann and
Anne{-}Marie Ternes and
Anke Wienecke{-}Baldacchino and
Daniel Struck and
Dani{\`{e}}le Moes and
Reinhard Schneider},
title = {Bioinformatics as a driver, not a passenger, of translational biomedical
research: Perspectives from the 6\({}^{\mbox{th }}\)Benelux bioinformatics
conference},
journal = {J. Clin. Bioinform.},
volume = {2},
pages = {7},
year = {2012},
url = {https://doi.org/10.1186/2043-9113-2-7},
doi = {10.1186/2043-9113-2-7},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jclinbioinf/AzuajeHTWSMS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/scfbm/CorpasFS12,
author = {Manuel Corpas and
Segun A. Fatumo and
Reinhard Schneider},
title = {How Not to Be a Bioinformatician},
journal = {Source Code Biol. Medicine},
volume = {7},
pages = {3},
year = {2012},
url = {https://doi.org/10.1186/1751-0473-7-3},
doi = {10.1186/1751-0473-7-3},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/scfbm/CorpasFS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieeehpcs/LefevreMOPPCBHLSSNLMPATHD12,
author = {Laurent Lef{\`{e}}vre and
Vicente Martin and
Miguel A. Ordonez and
Johnatan E. Pecero and
Jean{-}Marc Pierson and
Jes{\'{u}}s Carretero and
Pascal Bouvry and
David R. C. Hill and
Jes{\'{u}}s Labarta and
Reinhard Schneider and
James C. Sexton and
Mads Nyg{\aa}rd and
Gorka Esnal Lopez and
Maria Mirto and
Marco Passante and
Giovanni Aloisio and
Carsten Trinitis and
Alexander Heinecke and
Lamia Djoudi},
editor = {Waleed W. Smari and
Vesna Zeljkovic},
title = {{HPCS} 2012 panels: Panel {I:} Energy efficient systems in next generation
high performance data and compute centers},
booktitle = {2012 International Conference on High Performance Computing {\&}
Simulation, {HPCS} 2012, Madrid, Spain, July 2-6, 2012},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/HPCSim.2012.6266879},
doi = {10.1109/HPCSIM.2012.6266879},
timestamp = {Tue, 14 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ieeehpcs/LefevreMOPPCBHLSSNLMPATHD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PavlopoulosSMSKASB11,
author = {Georgios A. Pavlopoulos and
Maria Secrier and
Charalampos N. Moschopoulos and
Theodoros G. Soldatos and
Sophia Kossida and
Jan Aerts and
Reinhard Schneider and
Pantelis G. Bagos},
title = {Using graph theory to analyze biological networks},
journal = {BioData Min.},
volume = {4},
pages = {10},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-10},
doi = {10.1186/1756-0381-4-10},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/PavlopoulosSMSKASB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JoostenBKHHSSV11,
author = {Robbie P. Joosten and
Tim A. H. te Beek and
Elmar Krieger and
Maarten L. Hekkelman and
Rob W. W. Hooft and
Reinhard Schneider and
Chris Sander and
Gert Vriend},
title = {A series of {PDB} related databases for everyday needs},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {411--419},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1105},
doi = {10.1093/NAR/GKQ1105},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JoostenBKHHSSV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PavlopoulosSBS10,
author = {Georgios A. Pavlopoulos and
Theodoros G. Soldatos and
Adriano Barbosa{-}Silva and
Reinhard Schneider},
title = {A reference guide for tree analysis and visualization},
journal = {BioData Min.},
volume = {3},
pages = {1},
year = {2010},
url = {https://doi.org/10.1186/1756-0381-3-1},
doi = {10.1186/1756-0381-3-1},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PavlopoulosSBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SatagopamTSPPB0H10,
author = {Venkata P. Satagopam and
Margarita C. Theodoropoulou and
Christos K. Stampolakis and
Georgios A. Pavlopoulos and
Nikolaos Papandreou and
Pantelis G. Bagos and
Reinhard Schneider and
Stavros J. Hamodrakas},
title = {GPCRs, G-proteins, effectors and their interactions: human-gpDB, a
database employing visualization tools and data integration techniques},
journal = {Database J. Biol. Databases Curation},
volume = {2010},
year = {2010},
url = {https://doi.org/10.1093/database/baq019},
doi = {10.1093/DATABASE/BAQ019},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SatagopamTSPPB0H10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Barbosa-SilvaSMPFASO10,
author = {Adriano Barbosa{-}Silva and
Theodoros G. Soldatos and
Ivan L. F. Magalh{\~{a}}es and
Georgios A. Pavlopoulos and
Jean{-}Fred Fontaine and
Miguel A. Andrade{-}Navarro and
Reinhard Schneider and
Jos{\'{e}} Miguel Ortega},
title = {{LAITOR} - Literature Assistant for Identification of Terms co-Occurrences
and Relationships},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {70},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-70},
doi = {10.1186/1471-2105-11-70},
timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Barbosa-SilvaSMPFASO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ListerDHKKRS10,
author = {Allyson L. Lister and
Ruchira S. Datta and
Oliver Hofmann and
Roland Krause and
Michael Kuhn and
Bettina Roth and
Reinhard Schneider},
title = {Live Coverage of Intelligent Systems for Molecular Biology/European
Conference on Computational Biology {(ISMB/ECCB)} 2009},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {1},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1000640},
doi = {10.1371/JOURNAL.PCBI.1000640},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ListerDHKKRS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ListerDHKKRS10a,
author = {Allyson L. Lister and
Ruchira S. Datta and
Oliver Hofmann and
Roland Krause and
Michael Kuhn and
Bettina Roth and
Reinhard Schneider},
title = {Live Coverage of Scientific Conferences Using Web Technologies},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {1},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1000563},
doi = {10.1371/JOURNAL.PCBI.1000563},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ListerDHKKRS10a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ws/ODonoghueHPH0SSJ10,
author = {Se{\'{a}}n I. O'Donoghue and
Heiko Horn and
Evangelos Pafilis and
Sven Haag and
Michael Kuhn and
Venkata P. Satagopam and
Reinhard Schneider and
Lars Juhl Jensen},
title = {Reflect: {A} practical approach to web semantics},
journal = {J. Web Semant.},
volume = {8},
number = {2-3},
pages = {182--189},
year = {2010},
url = {https://doi.org/10.1016/j.websem.2010.03.003},
doi = {10.1016/J.WEBSEM.2010.03.003},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ws/ODonoghueHPH0SSJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PavlopoulosPKHS09,
author = {Georgios A. Pavlopoulos and
Evangelos Pafilis and
Michael Kuhn and
Sean D. Hooper and
Reinhard Schneider},
title = {OnTheFly: a tool for automated document-based text annotation, data
linking and network generation},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {977--978},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp081},
doi = {10.1093/BIOINFORMATICS/BTP081},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PavlopoulosPKHS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PavlopoulosMHSK09,
author = {Georgios A. Pavlopoulos and
Charalampos N. Moschopoulos and
Sean D. Hooper and
Reinhard Schneider and
Sophia Kossida},
title = {jClust: a clustering and visualization toolbox},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1994--1996},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp330},
doi = {10.1093/BIOINFORMATICS/BTP330},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PavlopoulosMHSK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MoschopoulosPSLK09,
author = {Charalampos N. Moschopoulos and
Georgios A. Pavlopoulos and
Reinhard Schneider and
Spiridon D. Likothanassis and
Sophia Kossida},
title = {{GIBA:} a clustering tool for detecting protein complexes},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-6}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S6-S11},
doi = {10.1186/1471-2105-10-S6-S11},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MoschopoulosPSLK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PavlopoulosWS08,
author = {Georgios A. Pavlopoulos and
Anna{-}Lynn Wegener and
Reinhard Schneider},
title = {A survey of visualization tools for biological network analysis},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-12},
doi = {10.1186/1756-0381-1-12},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PavlopoulosWS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Barbosa-SilvaSSO08,
author = {Adriano Barbosa{-}Silva and
Venkata P. Satagopam and
Reinhard Schneider and
Jos{\'{e}} Miguel Ortega},
title = {Clustering of cognate proteins among distinct proteomes derived from
multiple links to a single seed sequence},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-141},
doi = {10.1186/1471-2105-9-141},
timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Barbosa-SilvaSSO08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PavlopoulosOSSP008,
author = {Georgios A. Pavlopoulos and
Se{\'{a}}n I. O'Donoghue and
Venkata P. Satagopam and
Theodoros G. Soldatos and
Evangelos Pafilis and
Reinhard Schneider},
title = {Arena3D: visualization of biological networks in 3D},
journal = {{BMC} Syst. Biol.},
volume = {2},
pages = {104},
year = {2008},
url = {https://doi.org/10.1186/1752-0509-2-104},
doi = {10.1186/1752-0509-2-104},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PavlopoulosOSSP008.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GuntherKDCSPAUGJSSRBBP08,
author = {Stefan G{\"{u}}nther and
Michael Kuhn and
Mathias Dunkel and
Monica Campillos and
Christian Senger and
Evangelia Petsalaki and
Jessica Ahmed and
Eduardo Garcia Urdiales and
Andreas Gewiess and
Lars Juhl Jensen and
Reinhard Schneider and
Roman Skoblo and
Robert B. Russell and
Philip E. Bourne and
Peer Bork and
Robert Preissner},
title = {SuperTarget and Matador: resources for exploring drug-target relationships},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {919--922},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm862},
doi = {10.1093/NAR/GKM862},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GuntherKDCSPAUGJSSRBBP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ismb/1999,
editor = {Thomas Lengauer and
Reinhard Schneider and
Peer Bork and
Douglas L. Brutlag and
Janice I. Glasgow and
Hans{-}Werner Mewes and
Ralf Zimmer},
title = {Proceedings of the Seventh International Conference on Intelligent
Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany},
publisher = {{AAAI}},
year = {1999},
isbn = {1-57735-083-9},
timestamp = {Mon, 24 Jun 2013 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/1999.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DodgeSS98,
author = {Chris Dodge and
Reinhard Schneider and
Chris Sander},
title = {The {HSSP} database of protein structure-sequence alignments and family
profiles},
journal = {Nucleic Acids Res.},
volume = {26},
number = {1},
pages = {313--315},
year = {1998},
url = {https://doi.org/10.1093/nar/26.1.313},
doi = {10.1093/NAR/26.1.313},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DodgeSS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndradeCDSSTVO97,
author = {Miguel A. Andrade and
Georg Casari and
Antoine de Daruvar and
Chris Sander and
Reinhard Schneider and
Javier Tamames and
Alfonso Valencia and
Christos A. Ouzounis},
title = {Sequence analysis of the Methanococcus jannaschii genome and the prediction
of protein function},
journal = {Comput. Appl. Biosci.},
volume = {13},
number = {4},
pages = {481--483},
year = {1997},
url = {https://doi.org/10.1093/bioinformatics/13.4.481},
doi = {10.1093/BIOINFORMATICS/13.4.481},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndradeCDSSTVO97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchneiderDS97,
author = {Reinhard Schneider and
Antoine de Daruvar and
Chris Sander},
title = {The {HSSP} database of protein structure-sequence alignments},
journal = {Nucleic Acids Res.},
volume = {25},
number = {1},
pages = {226--230},
year = {1997},
url = {https://doi.org/10.1093/nar/25.1.226},
doi = {10.1093/NAR/25.1.226},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SchneiderDS97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchneiderS96,
author = {Reinhard Schneider and
Chris Sander},
title = {The {HSSP} database of protein structure-sequence alignments},
journal = {Nucleic Acids Res.},
volume = {24},
number = {1},
pages = {201--205},
year = {1996},
url = {https://doi.org/10.1093/nar/24.1.201},
doi = {10.1093/NAR/24.1.201},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SchneiderS96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/dnb/Schneider94c,
author = {Reinhard Schneider},
title = {Sequenz und Sequenz-Struktur: Vergleiche und deren Anwendung f{\"{u}}r
die Struktur- und Funktionsvorhersage von Proteinen},
school = {University of Heidelberg, Germany},
year = {1994},
url = {https://d-nb.info/942417690},
timestamp = {Sat, 17 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/dnb/Schneider94c.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RostSS94,
author = {Burkhard Rost and
Chris Sander and
Reinhard Schneider},
title = {{PHD} - an automatic mail server for protein secondary structure prediction},
journal = {Comput. Appl. Biosci.},
volume = {10},
number = {1},
pages = {53--60},
year = {1994},
url = {https://doi.org/10.1093/bioinformatics/10.1.53},
doi = {10.1093/BIOINFORMATICS/10.1.53},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RostSS94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hicss/RostSS94,
author = {Burkhard Rost and
Chris Sander and
Reinhard Schneider},
title = {Evolution and Neural Networks - Protein Secondary Structure Prediction
Above 71{\%} Accuracy},
booktitle = {27th Annual Hawaii International Conference on System Sciences (HICSS-27),
January 4-7, 1994, Maui, Hawaii, {USA}},
pages = {385--394},
publisher = {{IEEE} Computer Society},
year = {1994},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hicss/RostSS94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ScharfSCBVOS94,
author = {Michael Scharf and
Reinhard Schneider and
Georg Casari and
Peer Bork and
Alfonso Valencia and
Christos A. Ouzounis and
Chris Sander},
editor = {Russ B. Altman and
Douglas L. Brutlag and
Peter D. Karp and
Richard H. Lathrop and
David B. Searls},
title = {GeneQuiz: {A} Workbench for Sequence Analysis},
booktitle = {Proceedings of the Second International Conference on Intelligent
Systems for Molecular Biology, August 14-17, 1994, Stanford University,
Stanford, California, {USA}},
pages = {348--353},
publisher = {{AAAI}},
year = {1994},
url = {http://www.aaai.org/Library/ISMB/1994/ismb94-043.php},
timestamp = {Mon, 24 Jun 2013 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/ScharfSCBVOS94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SanderS93,
author = {Chris Sander and
Reinhard Schneider},
title = {The {HSSP} data base of protein structure-sequence alignments},
journal = {Nucleic Acids Res.},
volume = {21},
number = {13},
pages = {3105--3109},
year = {1993},
url = {https://doi.org/10.1093/nar/21.13.3105},
doi = {10.1093/NAR/21.13.3105},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SanderS93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/supercomputer/SanderSS92,
author = {Chris Sander and
Reinhard Schneider and
Pieter F. W. Stouten},
editor = {Hans Werner Meuer},
title = {The Human Genome and High Performance Computing in Molecular Biology},
booktitle = {Supercomputer'92: Anwendungen, Architekturen, Trends, Seminar, Mannheim,
25.-27. Juni 1992, Proceedings},
series = {Informatik Aktuell},
pages = {32--48},
publisher = {Springer},
year = {1992},
url = {https://doi.org/10.1007/978-3-642-77661-8\_3},
doi = {10.1007/978-3-642-77661-8\_3},
timestamp = {Tue, 23 May 2017 01:12:09 +0200},
biburl = {https://dblp.org/rec/conf/supercomputer/SanderSS92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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