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ORCIDBibTeX records: Susanna-Assunta Sansone
@article{DBLP:journals/datascience/DavidRCLCGHKKLOPKRSWWBMABCC23,
author = {Romain David and
Audrey S. Richard and
Claire Connellan and
Katharina B. Lauer and
Maria Luisa Chiusano and
Carole A. Goble and
Martin Houde and
Isabel Kemmer and
Antje Keppler and
Philippe Lieutaud and
Christian Ohmann and
Maria Panagiotopoulou and
Sara Raza Khan and
Arina Rybina and
Stian Soiland{-}Reyes and
Charlotte Wit and
Rudolf Wittner and
Rafael Andrade Buono and
Sarah Arnaud Marsh and
Pauline Audergon and
Dylan Bonfils and
Jos{\'{e}} Mar{\'{\i}}a Carazo and
Remi Charrel and
Frederik Coppens and
Wolfgang Fecke and
Claudia Filippone and
Eva G. Alvarez and
Sheraz Gul and
Henning Hermjakob and
Katja Herzog and
Petr Holub and
Lukasz Kozera and
Allyson L. Lister and
Jos{\'{e}} L{\'{o}}pez{-}Coronado and
B{\'{e}}n{\'{e}}dicte Madon and
Kurt Majcen and
William Martin and
Wolfgang M{\"{u}}ller and
Elli Papadopoulou and
Christine M. A. Prat and
Paolo Romano and
Susanna{-}Assunta Sansone and
Gary Saunders and
Niklas Blomberg and
Jonathan Ewbank},
title = {Umbrella Data Management Plans to Integrate {FAIR} Data: Lessons From
the ISIDORe and {BY-COVID} Consortia for Pandemic Preparedness},
journal = {Data Sci. J.},
volume = {22},
pages = {35},
year = {2023},
url = {https://doi.org/10.5334/dsj-2023-035},
doi = {10.5334/DSJ-2023-035},
timestamp = {Mon, 01 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/datascience/DavidRCLCGHKKLOPKRSWWBMABCC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/LeeBBFGLMRRSW21,
author = {Graham Lee and
Sebastian Bacon and
Ian Bush and
Laura Fortunato and
David Gavaghan and
Thibault Lestang and
Caroline Morton and
Martin Robinson and
Philippe Rocca{-}Serra and
Susanna{-}Assunta Sansone and
Helena Webb},
title = {Barely sufficient practices in scientific computing},
journal = {Patterns},
volume = {2},
number = {2},
pages = {100206},
year = {2021},
url = {https://doi.org/10.1016/j.patter.2021.100206},
doi = {10.1016/J.PATTER.2021.100206},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/patterns/LeeBBFGLMRRSW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeardBNTGSA20,
author = {Niall Beard and
Finn Bacall and
Aleksandra Nenadic and
Milo Thurston and
Carole A. Goble and
Susanna{-}Assunta Sansone and
Teresa K. Attwood},
title = {TeSS: a platform for discovering life-science training opportunities},
journal = {Bioinform.},
volume = {36},
number = {10},
pages = {3290--3291},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa047},
doi = {10.1093/BIOINFORMATICS/BTAA047},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeardBNTGSA20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dint/JacobsenAJBCCCC20,
author = {Annika Jacobsen and
Ricardo de Miranda Azevedo and
Nick S. Juty and
Dominique Batista and
Simon J. Coles and
Ronald Cornet and
M{\'{e}}lanie Courtot and
Merc{\`{e}} Crosas and
Michel Dumontier and
Chris T. A. Evelo and
Carole A. Goble and
Giancarlo Guizzardi and
Karsten Kryger Hansen and
Ali Hasnain and
Kristina M. Hettne and
Jaap Heringa and
Rob W. W. Hooft and
Melanie Imming and
Keith G. Jeffery and
Rajaram Kaliyaperumal and
Martijn G. Kersloot and
Christine R. Kirkpatrick and
Tobias Kuhn and
Ignasi Labastida and
Barbara Magagna and
Peter McQuilton and
Natalie Meyers and
Annalisa Montesanti and
Mirjam van Reisen and
Philippe Rocca{-}Serra and
Robert Pergl and
Susanna{-}Assunta Sansone and
Luiz Olavo Bonino da Silva Santos and
Juliane Schneider and
George O. Strawn and
Mark Thompson and
Andra Waagmeester and
Tobias Weigel and
Mark D. Wilkinson and
Egon L. Willighagen and
Peter Wittenburg and
Marco Roos and
Barend Mons and
Erik Schultes},
title = {{FAIR} Principles: Interpretations and Implementation Considerations},
journal = {Data Intell.},
volume = {2},
number = {1-2},
pages = {10--29},
year = {2020},
url = {https://doi.org/10.1162/dint\_r\_00024},
doi = {10.1162/DINT\_R\_00024},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dint/JacobsenAJBCCCC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dint/McQuiltonBBGCIL20,
author = {Peter McQuilton and
Dominique Batista and
Oya Beyan and
Ram{\'{o}}n Granell and
Simon J. Coles and
Massimiliano Izzo and
Allyson L. Lister and
Robert Pergl and
Philippe Rocca{-}Serra and
Ben Schaap and
Hugh P. Shanahan and
Milo Thurston and
Susanna{-}Assunta Sansone},
title = {Helping the Consumers and Producers of Standards, Repositories and
Policies to Enable {FAIR} Data},
journal = {Data Intell.},
volume = {2},
number = {1-2},
pages = {151--157},
year = {2020},
url = {https://doi.org/10.1162/dint\_a\_00037},
doi = {10.1162/DINT\_A\_00037},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dint/McQuiltonBBGCIL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dint/SustkovaHWJKPSM20,
author = {Hana Pergl Sustkova and
Kristina Maria Hettne and
Peter Wittenburg and
Annika Jacobsen and
Tobias Kuhn and
Robert Pergl and
Jan Slifka and
Peter McQuilton and
Barbara Magagna and
Susanna{-}Assunta Sansone and
Markus Stocker and
Melanie Imming and
Larry Lannom and
Mark A. Musen and
Erik Schultes},
title = {{FAIR} Convergence Matrix: Optimizing the Reuse of Existing FAIR-Related
Resources},
journal = {Data Intell.},
volume = {2},
number = {1-2},
pages = {158--170},
year = {2020},
url = {https://doi.org/10.1162/dint\_a\_00038},
doi = {10.1162/DINT\_A\_00038},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dint/SustkovaHWJKPSM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhoonsariMBBCCC19,
author = {Payam Emami Khoonsari and
Pablo A. Moreno and
Sven Bergmann and
Joachim Burman and
Marco Capuccini and
Matteo Carone and
Marta Cascante and
Pedro de Atauri and
Carles Foguet and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Thomas Hankemeier and
Kenneth Haug and
Sijin He and
Stephanie Herman and
David Johnson and
Namrata Kale and
Anders Larsson and
Steffen Neumann and
Kristian Peters and
Luca Pireddu and
Philippe Rocca{-}Serra and
Pierrick Roger and
Rico Rueedi and
Christoph Ruttkies and
Noureddin Sadawi and
Reza M. Salek and
Susanna{-}Assunta Sansone and
Daniel Schober and
Vitaly A. Selivanov and
Etienne A. Th{\'{e}}venot and
Michael van Vliet and
Gianluigi Zanetti and
Christoph Steinbeck and
Kim Kultima and
Ola Spjuth},
title = {Interoperable and scalable data analysis with microservices: applications
in metabolomics},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3752--3760},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz160},
doi = {10.1093/BIOINFORMATICS/BTZ160},
timestamp = {Wed, 24 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhoonsariMBBCCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/ListerMTS19,
author = {Allyson L. Lister and
Peter McQuilton and
Milo Thurston and
Susanna{-}Assunta Sansone},
editor = {Ronald Cornet and
Andra Waagmeester},
title = {Mapping Subjects and Domains across the Humanities and Natural Sciences
in FAIRsharing},
booktitle = {12th International Conference on Semantic Web Applications and Tools
for Health Care and Life Sciences},
series = {{CEUR} Workshop Proceedings},
volume = {2849},
pages = {133--134},
publisher = {CEUR-WS.org},
year = {2019},
url = {https://ceur-ws.org/Vol-2849/paper-17.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:02 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/ListerMTS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1902-11162,
author = {Peter Wittenburg and
Hana Pergl Sustkova and
Annalisa Montesanti and
Margreet Bloemers and
S. H. de Waard and
Mark A. Musen and
John Graybeal and
Kristina M. Hettne and
Annika Jacobsen and
Robert Pergl and
Rob W. W. Hooft and
Christine Staiger and
Celia W. G. van Gelder and
Sebastiaan L. Knijnenburg and
A. C. van Arkel and
Bert Meerman and
Mark D. Wilkinson and
Susanna{-}Assunta Sansone and
Philippe Rocca{-}Serra and
Peter McQuilton and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
G. J. C. Aben and
Patr{\'{\i}}cia Henning and
Maria Simone de Menezes Alencar and
C. Ribeiro and
C. R. L. Silva and
Lu{\'{\i}}s Fernando Say{\~{a}}o and
Luana Sales and
Viviane Veiga and
Jefferson Lima and
Simone Dib and
Paula Xavier dos Santos and
R. Murtinho and
Jakob Tendel and
B. F. Schaap and
P. M. Brouwer and
A. K. Gavai and
Yamine Bouzembrak and
Hans J. P. Marvin and
Albert Mons and
Tobias Kuhn and
A. A. Gambardella and
Ricardo de Miranda Azevedo and
Vesa Muhonen and
Mira van der Naald and
N. W. Smit and
M. J. Buys and
Taco F. de Bruin and
Fieke Schoots and
H. J. E. Goodson and
Henry S. Rzepa and
Keith G. Jeffery and
Hugh P. Shanahan and
M. Axton and
Veniamin Tkachenko and
Anne Deslattes Mays and
Natalie Meyers and
Michael Conlon and
Laurel L. Haak and
Erik A. Schultes},
title = {The {FAIR} Funder pilot programme to make it easy for funders to require
and for grantees to produce {FAIR} Data},
journal = {CoRR},
volume = {abs/1902.11162},
year = {2019},
url = {http://arxiv.org/abs/1902.11162},
eprinttype = {arXiv},
eprint = {1902.11162},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1902-11162.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/Gonzalez-Beltran18,
author = {Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
John Campbell and
Patrick J. Dunn and
Diana Guijarro and
Sanda Ionescu and
Hyeoneui Kim and
Jared Lyle and
Jeffrey A. Wiser and
Susanna{-}Assunta Sansone and
Philippe Rocca{-}Serra},
title = {Data discovery with {DATS:} exemplar adoptions and lessons learned},
journal = {J. Am. Medical Informatics Assoc.},
volume = {25},
number = {1},
pages = {13--16},
year = {2018},
url = {https://doi.org/10.1093/jamia/ocx119},
doi = {10.1093/JAMIA/OCX119},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/Gonzalez-Beltran18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ChenGOLSCTLZJRS18,
author = {Xiaoling Chen and
Anupama E. Gururaj and
Ibrahim Burak {\"{O}}zyurt and
Ruiling Liu and
Ergin Soysal and
Trevor Cohen and
Firat Tiryaki and
Yueling Li and
Nansu Zong and
Min Jiang and
Deevakar Rogith and
Mandana Salimi and
Hyeon{-}Eui Kim and
Philippe Rocca{-}Serra and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Claudiu Farcas and
Todd Johnson and
Ronald Margolis and
George Alter and
Susanna{-}Assunta Sansone and
Ian Fore and
Lucila Ohno{-}Machado and
Jeffrey S. Grethe and
Hua Xu},
title = {DataMed - an open source discovery index for finding biomedical datasets},
journal = {J. Am. Medical Informatics Assoc.},
volume = {25},
number = {3},
pages = {300--308},
year = {2018},
url = {https://doi.org/10.1093/jamia/ocx121},
doi = {10.1093/JAMIA/OCX121},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ChenGOLSCTLZJRS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/www/MusenSCKCSG18,
author = {Mark A. Musen and
Susanna{-}Assunta Sansone and
Kei{-}Hoi Cheung and
Steven H. Kleinstein and
Morgan Crafts and
Stephan C. Sch{\"{u}}rer and
John Graybeal},
editor = {Pierre{-}Antoine Champin and
Fabien Gandon and
Mounia Lalmas and
Panagiotis G. Ipeirotis},
title = {{CEDAR:} Semantic Web Technology to Support Open Science},
booktitle = {Companion of the The Web Conference 2018 on The Web Conference 2018,
{WWW} 2018, Lyon , France, April 23-27, 2018},
pages = {427--428},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3184558.3186200},
doi = {10.1145/3184558.3186200},
timestamp = {Fri, 16 Apr 2021 10:04:12 +0200},
biburl = {https://dblp.org/rec/conf/www/MusenSCKCSG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/PawlikGNPKLMSHG17,
author = {Aleksandra Pawlik and
Celia W. G. van Gelder and
Aleksandra Nenadic and
Patricia M. Palagi and
Eija Korpelainen and
Philip Lijnzaad and
Diana Marek and
Susanna{-}Assunta Sansone and
John M. Hancock and
Carole A. Goble},
title = {Developing a strategy for computational lab skills training through
Software and Data Carpentry: Experiences from the {ELIXIR} Pilot action},
journal = {F1000Research},
volume = {6},
pages = {1040},
year = {2017},
url = {https://doi.org/10.12688/f1000research.11718.1},
doi = {10.12688/F1000RESEARCH.11718.1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/PawlikGNPKLMSHG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/RijswijkBCCADEG17,
author = {Merlijn N. van Rijswijk and
Charlie Beirnaert and
Christophe Caron and
Marta Cascante and
Victoria Dominguez Del Angel and
Warwick B. Dunn and
Timothy M. D. Ebbels and
Franck Giacomoni and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Thomas Hankemeier and
Kenneth Haug and
Jose L. Izquierdo{-}Garc{\'{\i}}a and
Rafael C. Jim{\'{e}}nez and
Fabien Jourdan and
Namrata Kale and
Maria I. Klapa and
Oliver Kohlbacher and
Kairi Koort and
Kim Kultima and
Gildas Le Corguill{\'{e}} and
Nicholas K. Moschonas and
Steffen Neumann and
Claire O'Donovan and
Martin Reczko and
Philippe Rocca{-}Serra and
Antonio Rosato and
Reza M. Salek and
Susanna{-}Assunta Sansone and
Venkata P. Satagopam and
Daniel Schober and
Ruth Shimmo and
Rachel A. Spicer and
Ola Spjuth and
Etienne A. Th{\'{e}}venot and
Mark R. Viant and
Ralf J. M. Weber and
Egon L. Willighagen and
Gianluigi Zanetti and
Christoph Steinbeck},
title = {The future of metabolomics in {ELIXIR}},
journal = {F1000Research},
volume = {6},
pages = {1649},
year = {2017},
url = {https://doi.org/10.12688/f1000research.12342.1},
doi = {10.12688/F1000RESEARCH.12342.1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/RijswijkBCCADEG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/McQuiltonGRTLMS16,
author = {Peter McQuilton and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Philippe Rocca{-}Serra and
Milo Thurston and
Allyson L. Lister and
Eamonn Maguire and
Susanna{-}Assunta Sansone},
title = {BioSharing: curated and crowd-sourced metadata standards, databases
and data policies in the life sciences},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw075},
doi = {10.1093/DATABASE/BAW075},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/McQuiltonGRTLMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/GretheOXCLSGKCJ16,
author = {Jeffrey S. Grethe and
Ibrahim Burak {\"{O}}zyurt and
Hua Xu and
Xiaoling Chen and
Ruiling Liu and
Ergin Soysal and
Anupama E. Gururaj and
Hyeon{-}Eui Kim and
Trevor Cohen and
Todd R. Johnson and
Mandana Salimi and
Saeid Pournejati and
Min Jiang and
Claudiu Farcas and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Philippe Rocca{-}Serra and
Muhamamd F. Amith and
Cui Tao and
Ian Fore and
Ronald Margolis and
George Alter and
Susanna{-}Assunta Sansone and
Lucila Ohno{-}Machado},
title = {A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data
Discovery System},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2500116-1.3364063/2500305-1.3364058},
timestamp = {Wed, 17 Apr 2024 11:47:32 +0200},
biburl = {https://dblp.org/rec/conf/amia/GretheOXCLSGKCJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/XuGCLSGLOKCJSPJ16,
author = {Hua Xu and
Jeffrey S. Grethe and
Xiaoling Chen and
Ruiling Liu and
Ergin Soysal and
Anupama E. Gururaj and
Yueling Li and
Ibrahim Burak {\"{O}}zyurt and
Hyeon{-}Eui Kim and
Trevor Cohen and
Todd R. Johnson and
Mandana Salimi and
Saeid Pournejati and
Min Jiang and
Claudiu Farcas and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Philippe Rocca{-}Serra and
Muhamamd F. Amith and
Cui Tao and
Ian Fore and
Ronald Margolis and
George Alter and
Susanna{-}Assunta Sansone and
Lucila Ohno{-}Machado},
title = {Development of DataMed, a Data Discovery Index Prototype by bioCADDIE:
Laying the Groundwork for Biomedical Data Discovery},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t008-1.3362585/f008-1.3362586/2496904-1.3362592/2500199-1.3362587},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/XuGCLSGLOKCJSPJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Rocca-SerraWPGZ15,
author = {Philippe Rocca{-}Serra and
Ramona L. Walls and
Jacob Parnell and
Rachel Gallery and
Jie Zheng and
Susanna{-}Assunta Sansone and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n},
title = {Modeling a microbial community and biodiversity assay with {OBO} Foundry
ontologies: the interoperability gains of a modular approach},
journal = {Database J. Biol. Databases Curation},
volume = {2015},
year = {2015},
url = {https://doi.org/10.1093/database/bau132},
doi = {10.1093/DATABASE/BAU132},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/Rocca-SerraWPGZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/MusenBCDDGBKKOP15,
author = {Mark A. Musen and
Carol A. Bean and
Kei{-}Hoi Cheung and
Michel Dumontier and
Kim A. Durante and
Olivier Gevaert and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Purvesh Khatri and
Steven H. Kleinstein and
Martin J. O'Connor and
Yannick Pouliot and
Philippe Rocca{-}Serra and
Susanna{-}Assunta Sansone and
Jeffrey A. Wiser},
title = {The center for expanded data annotation and retrieval},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {6},
pages = {1148--1152},
year = {2015},
url = {https://doi.org/10.1093/jamia/ocv048},
doi = {10.1093/JAMIA/OCV048},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/MusenBCDDGBKKOP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/ShawEBRKBSSDJ15,
author = {Felix Shaw and
Anthony Etuk and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Philippe Rocca{-}Serra and
Paul J. Kersey and
Ruth Bastow and
Susanna{-}Assunta Sansone and
Vicky Schneider and
Robert P. Davey and
David Johnson},
editor = {James Malone and
Robert Stevens and
Kerstin Forsberg and
Andrea Splendiani},
title = {{COPO} - Linked Open Infrastructure for Plant Data},
booktitle = {Proceedings of the 8th Semantic Web Applications and Tools for Life
Sciences International Conference, Cambridge UK, December 7-10, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1546},
pages = {181--182},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1546/poster\_67.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:03 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/ShawEBRKBSSDJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BeltranNMSR14,
author = {Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Steffen Neumann and
Eamonn Maguire and
Susanna{-}Assunta Sansone and
Philippe Rocca{-}Serra},
title = {The Risa R/Bioconductor package: integrative data analysis from experimental
metadata and back again},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-1}},
pages = {S11},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S1-S11},
doi = {10.1186/1471-2105-15-S1-S11},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BeltranNMSR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BeltranMSR14,
author = {Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Eamonn Maguire and
Susanna{-}Assunta Sansone and
Philippe Rocca{-}Serra},
title = {linkedISA: semantic representation of ISA-Tab experimental metadata},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-14}},
pages = {S4},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S14-S4},
doi = {10.1186/1471-2105-15-S14-S4},
timestamp = {Thu, 30 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BeltranMSR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/TenenbaumSH14,
author = {Jessica D. Tenenbaum and
Susanna{-}Assunta Sansone and
Melissa A. Haendel},
title = {A sea of standards for omics data: sink or swim?},
journal = {J. Am. Medical Informatics Assoc.},
volume = {21},
number = {2},
pages = {200--203},
year = {2014},
url = {https://doi.org/10.1136/amiajnl-2013-002066},
doi = {10.1136/AMIAJNL-2013-002066},
timestamp = {Thu, 16 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/TenenbaumSH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HunterCDFBHJLMMMMNOPRRSSVCFS14,
author = {Sarah Hunter and
Matthew Corbett and
Hubert Denise and
Matthew Fraser and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Christopher I. Hunter and
Philip Jones and
Rasko Leinonen and
Craig McAnulla and
Eamonn Maguire and
John Maslen and
Alex L. Mitchell and
Gift Nuka and
Arnaud Oisel and
Sebastien Pesseat and
Rajesh Radhakrishnan and
Philippe Rocca{-}Serra and
Maxim Scheremetjew and
Peter Sterk and
Daniel Vaughan and
Guy Cochrane and
Dawn Field and
Susanna{-}Assunta Sansone},
title = {{EBI} metagenomics - a new resource for the analysis and archiving
of metagenomic data},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {600--606},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt961},
doi = {10.1093/NAR/GKT961},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HunterCDFBHJLMMMMNOPRRSSVCFS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/Rocca-SerraWPGZ14,
author = {Philippe Rocca{-}Serra and
Ramona L. Walls and
Jacob Parnell and
Rachel Gallery and
Jie Zheng and
Susanna{-}Assunta Sansone and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n},
editor = {William R. Hogan and
Sivaram Arabandi and
Mathias Brochhausen},
title = {Modeling a Microbial Community and Biodiversity Assay with {OBI} and
{PCO} {OBO} Foundry Ontologies: the Interoperability Gains of a Modular
Approach},
booktitle = {Proceedings of the 5th International Conference on Biomedical Ontology,
{ICBO} 2014, Houston, Texas, USA, October 8-9, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1327},
pages = {64},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1327/icbo2014\_paper\_20.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/Rocca-SerraWPGZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vissym/MaguireRSC14,
author = {Eamonn Maguire and
Philippe Rocca{-}Serra and
Susanna{-}Assunta Sansone and
Min Chen},
editor = {Niklas Elmqvist and
Mario Hlawitschka and
Jessie Kennedy},
title = {Redesigning the Sequence Logo with Glyph-based Approaches to Aid Interpretation},
booktitle = {16th Eurographics Conference on Visualization, EuroVis 2014 - Short
Papers, Swansea, UK, June 9-13, 2014},
publisher = {Eurographics Association},
year = {2014},
url = {https://doi.org/10.2312/eurovisshort.20141159},
doi = {10.2312/EUROVISSHORT.20141159},
timestamp = {Wed, 01 Jul 2020 13:32:37 +0200},
biburl = {https://dblp.org/rec/conf/vissym/MaguireRSC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SalekHCHWMMBRSS13,
author = {Reza M. Salek and
Kenneth Haug and
Pablo Conesa and
Janna Hastings and
Mark Williams and
Tejasvi Mahendraker and
Eamonn Maguire and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Philippe Rocca{-}Serra and
Susanna{-}Assunta Sansone and
Christoph Steinbeck},
title = {The MetaboLights repository: curation challenges in metabolomics},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bat029},
doi = {10.1093/DATABASE/BAT029},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SalekHCHWMMBRSS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaguireBWSR13,
author = {Eamonn Maguire and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Patricia L. Whetzel and
Susanna{-}Assunta Sansone and
Philippe Rocca{-}Serra},
title = {OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets},
journal = {Bioinform.},
volume = {29},
number = {4},
pages = {525--527},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/bts718},
doi = {10.1093/BIOINFORMATICS/BTS718},
timestamp = {Thu, 30 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaguireBWSR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SoldatovaSDS13,
author = {Larisa N. Soldatova and
Susanna{-}Assunta Sansone and
Michel Dumontier and
Nigam H. Shah},
title = {Selected papers from the 15th Annual Bio-Ontologies Special Interest
Group Meeting},
journal = {J. Biomed. Semant.},
volume = {4},
number = {{S-1}},
pages = {I1},
year = {2013},
url = {http://www.jbiomedsem.com/content/4/S1/I1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SoldatovaSDS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HaugSCHMRMWNRMBSGS13,
author = {Kenneth Haug and
Reza M. Salek and
Pablo Conesa and
Janna Hastings and
Paula de Matos and
Mark Rijnbeek and
Tejasvi Mahendraker and
Mark Williams and
Steffen Neumann and
Philippe Rocca{-}Serra and
Eamonn Maguire and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Susanna{-}Assunta Sansone and
Julian L. Griffin and
Christoph Steinbeck},
title = {MetaboLights - an open-access general-purpose repository for metabolomics
studies and associated meta-data},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {781--786},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1004},
doi = {10.1093/NAR/GKS1004},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HaugSCHMRMWNRMBSGS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tvcg/MaguireRSDC13,
author = {Eamonn Maguire and
Philippe Rocca{-}Serra and
Susanna{-}Assunta Sansone and
Jim Davies and
Min Chen},
title = {Visual Compression of Workflow Visualizations with Automated Detection
of Macro Motifs},
journal = {{IEEE} Trans. Vis. Comput. Graph.},
volume = {19},
number = {12},
pages = {2576--2585},
year = {2013},
url = {https://doi.org/10.1109/TVCG.2013.225},
doi = {10.1109/TVCG.2013.225},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tvcg/MaguireRSDC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GaudetABBBCDFGHKKMKMNOOPRSSSAVWYM12,
author = {Pascale Gaudet and
Cecilia N. Arighi and
Frederic B. Bastian and
Alex Bateman and
Judith A. Blake and
J. Michael Cherry and
Peter D'Eustachio and
Robert D. Finn and
Michelle G. Giglio and
Lynette Hirschman and
Renate Kania and
William Klimke and
Maria Jesus Martin and
Ilene Karsch{-}Mizrachi and
Monica C. Munoz{-}Torres and
Darren A. Natale and
Claire O'Donovan and
B. F. Francis Ouellette and
Kim D. Pruitt and
Marc Robinson{-}Rechavi and
Susanna{-}Assunta Sansone and
Paul N. Schofield and
Granger G. Sutton and
Kimberly Van Auken and
Sona Vasudevan and
Cathy H. Wu and
Jasmine Young and
Raja Mazumder},
title = {Recent advances in biocuration: Meeting Report from the fifth International
Biocuration Conference},
journal = {Database J. Biol. Databases Curation},
volume = {2012},
year = {2012},
url = {https://doi.org/10.1093/database/bas036},
doi = {10.1093/DATABASE/BAS036},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GaudetABBBCDFGHKKMKMNOOPRSSSAVWYM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SoldatovaSDS12,
author = {Larisa N. Soldatova and
Susanna{-}Assunta Sansone and
Michel Dumontier and
Nigam H. Shah},
title = {Selected papers from the 14th Annual Bio-Ontologies Special Interest
Group Meeting},
journal = {J. Biomed. Semant.},
volume = {3},
number = {{S-1}},
pages = {I1},
year = {2012},
url = {http://www.jbiomedsem.com/content/3/S1/I1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SoldatovaSDS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SuiBRCMRMAHSKSACCSHH12,
author = {Shannan J. Ho Sui and
Kimberly Begley and
Dorothy Reilly and
Brad Chapman and
Ray McGovern and
Philippe Rocca{-}Serra and
Eamonn Maguire and
Gabriel M. Altschuler and
Terah A. A. Hansen and
Ramakrishna Sompallae and
Andrei Krivtsov and
Ramesh A. Shivdasani and
Scott A. Armstrong and
Aed{\'{\i}}n C. Culhane and
Mick Correll and
Susanna{-}Assunta Sansone and
Oliver Hofmann and
Winston Hide},
title = {The Stem Cell Discovery Engine: an integrated repository and analysis
system for cancer stem cell comparisons},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {984--991},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr1051},
doi = {10.1093/NAR/GKR1051},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SuiBRCMRMAHSKSACCSHH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tvcg/MaguireRSDC12,
author = {Eamonn Maguire and
Philippe Rocca{-}Serra and
Susanna{-}Assunta Sansone and
Jim Davies and
Min Chen},
title = {Taxonomy-Based Glyph Design - with a Case Study on Visualizing Workflows
of Biological Experiments},
journal = {{IEEE} Trans. Vis. Comput. Graph.},
volume = {18},
number = {12},
pages = {2603--2612},
year = {2012},
url = {https://doi.org/10.1109/TVCG.2012.271},
doi = {10.1109/TVCG.2012.271},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tvcg/MaguireRSDC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ao/Rocca-SerraROWSGCBSSP11,
author = {Philippe Rocca{-}Serra and
Alan Ruttenberg and
Martin J. O'Connor and
Patricia L. Whetzel and
Daniel Schober and
Jay Greenbaum and
M{\'{e}}lanie Courtot and
Ryan Remy Brinkman and
Susanna{-}Assunta Sansone and
Richard H. Scheuermann and
Bjoern Peters},
title = {Overcoming the ontology enrichment bottleneck with Quick Term Templates},
journal = {Appl. Ontology},
volume = {6},
number = {1},
pages = {13--22},
year = {2011},
url = {https://doi.org/10.3233/AO-2011-0086},
doi = {10.3233/AO-2011-0086},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ao/Rocca-SerraROWSGCBSSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11,
author = {Pascale Gaudet and
Amos Bairoch and
Dawn Field and
Susanna{-}Assunta Sansone and
Chris F. Taylor and
Teresa K. Attwood and
Alex Bateman and
Judith A. Blake and
Carol J. Bult and
J. Michael Cherry and
Rex L. Chisholm and
Guy Cochrane and
Charles E. Cook and
Janan T. Eppig and
Michael Y. Galperin and
Robert Gentleman and
Carole A. Goble and
Takashi Gojobori and
John M. Hancock and
Douglas G. Howe and
Tadashi Imanishi and
Janet Kelso and
David Landsman and
Suzanna E. Lewis and
Ilene Karsch{-}Mizrachi and
Sandra E. Orchard and
B. F. Francis Ouellette and
Shoba Ranganathan and
Lorna J. Richardson and
Philippe Rocca{-}Serra and
Paul N. Schofield and
Damian Smedley and
Christopher Southan and
Tin Wee Tan and
Tatiana A. Tatusova and
Patricia L. Whetzel and
Owen White and
Chisato Yamasaki},
title = {Towards BioDBcore: a community-defined information specification for
biological databases},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/baq027},
doi = {10.1093/DATABASE/BAQ027},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SoldatovaSSS11,
author = {Larisa N. Soldatova and
Susanna{-}Assunta Sansone and
Susie Stephens and
Nigam H. Shah},
title = {Selected papers from the 13th Annual Bio-Ontologies Special Interest
Group Meeting},
journal = {J. Biomed. Semant.},
volume = {2},
number = {{S-2}},
pages = {I1},
year = {2011},
url = {http://www.jbiomedsem.com/content/2/S2/I1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SoldatovaSSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11,
author = {Pascale Gaudet and
Amos Bairoch and
Dawn Field and
Susanna{-}Assunta Sansone and
Chris F. Taylor and
Teresa K. Attwood and
Alex Bateman and
Judith A. Blake and
Carol J. Bult and
J. Michael Cherry and
Rex L. Chisholm and
Guy Cochrane and
Charles E. Cook and
Janan T. Eppig and
Michael Y. Galperin and
Robert Gentleman and
Carole A. Goble and
Takashi Gojobori and
John M. Hancock and
Douglas G. Howe and
Tadashi Imanishi and
Janet Kelso and
David Landsman and
Suzanna E. Lewis and
Ilene Karsch{-}Mizrachi and
Sandra E. Orchard and
B. F. Francis Ouellette and
Shoba Ranganathan and
Lorna J. Richardson and
Philippe Rocca{-}Serra and
Paul N. Schofield and
Damian Smedley and
Christopher Southan and
Tin Wee Tan and
Tatiana A. Tatusova and
Patricia L. Whetzel and
Owen White and
Chisato Yamasaki},
title = {Towards BioDBcore: a community-defined information specification for
biological databases},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {7--10},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1173},
doi = {10.1093/NAR/GKQ1173},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rocca-SerraBMSTBFHHHNSTS10,
author = {Philippe Rocca{-}Serra and
Marco Brandizi and
Eamonn Maguire and
Nataliya Sklyar and
Chris F. Taylor and
Kimberly Begley and
Dawn Field and
Stephen C. Harris and
Winston Hide and
Oliver Hofmann and
Steffen Neumann and
Peter Sterk and
Weida Tong and
Susanna{-}Assunta Sansone},
title = {{ISA} software suite: supporting standards-compliant experimental
annotation and enabling curation at the community level},
journal = {Bioinform.},
volume = {26},
number = {18},
pages = {2354--2356},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq415},
doi = {10.1093/BIOINFORMATICS/BTQ415},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rocca-SerraBMSTBFHHHNSTS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SoldatovaLSSS10,
author = {Larisa N. Soldatova and
Phillip W. Lord and
Susanna{-}Assunta Sansone and
Susie Stephens and
Nigam H. Shah},
title = {Selected papers from the 12\({}^{\mbox{th}}\) annual Bio-Ontologies
meeting},
journal = {J. Biomed. Semant.},
volume = {1},
number = {{S-1}},
pages = {I1},
year = {2010},
url = {http://www.jbiomedsem.com/content/1/S1/I1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SoldatovaLSSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BrinkmanCDFHLMPPRRSSSTZa10,
author = {Ryan Remy Brinkman and
M{\'{e}}lanie Courtot and
Dirk Derom and
Jennifer Fostel and
Yongqun He and
Phillip W. Lord and
James Malone and
Helen E. Parkinson and
Bj{\"{o}}rn Peters and
Philippe Rocca{-}Serra and
Alan Ruttenberg and
Susanna{-}Assunta Sansone and
Larisa N. Soldatova and
Christian J. Stoeckert Jr. and
Jessica A. Turner and
Jie Zheng and
et al.},
title = {Modeling biomedical experimental processes with {OBI}},
journal = {J. Biomed. Semant.},
volume = {1},
number = {{S-1}},
pages = {S7},
year = {2010},
url = {http://www.jbiomedsem.com/content/1/S1/S7},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/BrinkmanCDFHLMPPRRSSSTZa10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchoberSLKLMTRS09,
author = {Daniel Schober and
Barry Smith and
Suzanna E. Lewis and
Waclaw Kusnierczyk and
Jane Lomax and
Chris Mungall and
Chris F. Taylor and
Philippe Rocca{-}Serra and
Susanna{-}Assunta Sansone},
title = {Survey-based naming conventions for use in {OBO} Foundry ontology
development},
journal = {{BMC} Bioinform.},
volume = {10},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-125},
doi = {10.1186/1471-2105-10-125},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchoberSLKLMTRS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ParkinsonKKRSABDEFHLMMPRRSWBABBCKKMNRSSZSB09,
author = {Helen E. Parkinson and
Misha Kapushesky and
Nikolay Kolesnikov and
Gabriella Rustici and
Mohammadreza Shojatalab and
Niran Abeygunawardena and
Hugo B{\'{e}}rub{\'{e}} and
Miroslaw Dylag and
Ibrahim Emam and
Anna Farne and
Ele Holloway and
Margus Lukk and
James Malone and
Roby Mani and
Ekaterina Pilicheva and
Tim F. Rayner and
Faisal Ibne Rezwan and
Anjan Sharma and
Eleanor Williams and
Xiangqun Zheng Bradley and
Tomasz Adamusiak and
Marco Brandizi and
Tony Burdett and
Richard Coulson and
Maria Krestyaninova and
Pavel Kurnosov and
Eamonn Maguire and
Sudeshna Guha Neogi and
Philippe Rocca{-}Serra and
Susanna{-}Assunta Sansone and
Nataliya Sklyar and
Mengyao Zhao and
Ugis Sarkans and
Alvis Brazma},
title = {ArrayExpress update - from an archive of functional genomics experiments
to the atlas of gene expression},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {868--872},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn889},
doi = {10.1093/NAR/GKN889},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ParkinsonKKRSABDEFHLMMPRRSWBABBCKKMNRSSZSB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SpasicSSRKP08,
author = {Irena Spasic and
Daniel Schober and
Susanna{-}Assunta Sansone and
Dietrich Rebholz{-}Schuhmann and
Douglas B. Kell and
Norman W. Paton},
title = {Facilitating the development of controlled vocabularies for metabolomics
technologies with text mining},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-5}},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-S5-S5},
doi = {10.1186/1471-2105-9-S5-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SpasicSSRKP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WhetzelPCFFFGHMRSTWJ06,
author = {Patricia L. Whetzel and
Helen E. Parkinson and
Helen C. Causton and
Liju Fan and
Jennifer Fostel and
Gilberto Fragoso and
Laurence Game and
Mervi Heiskanen and
Norman Morrison and
Philippe Rocca{-}Serra and
Susanna{-}Assunta Sansone and
Chris F. Taylor and
Joseph White and
Christian J. Stoeckert Jr.},
title = {The {MGED} Ontology: a resource for semantics-based description of
microarray experiments},
journal = {Bioinform.},
volume = {22},
number = {7},
pages = {866--873},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl005},
doi = {10.1093/BIOINFORMATICS/BTL005},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WhetzelPCFFFGHMRSTWJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CastroRSTNRS06,
author = {Alexander Garc{\'{\i}}a Castro and
Philippe Rocca{-}Serra and
Robert Stevens and
Chris F. Taylor and
Karim Nashar and
Mark A. Ragan and
Susanna{-}Assunta Sansone},
title = {The use of concept maps during knowledge elicitation in ontology development
processes - the nutrigenomics use case},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {267},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-267},
doi = {10.1186/1471-2105-7-267},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CastroRSTNRS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SarkansPLOSACHRMSKSFRB05,
author = {Ugis Sarkans and
Helen E. Parkinson and
Gonzalo Garcia Lara and
Ahmet Oezcimen and
Anjan Sharma and
Niran Abeygunawardena and
Sergio Contrino and
Ele Holloway and
Philippe Rocca{-}Serra and
Gaurab Mukherjee and
Mohammadreza Shojatalab and
Misha Kapushesky and
Susanna{-}Assunta Sansone and
Anna Farne and
Tim F. Rayner and
Alvis Brazma},
title = {The ArrayExpress gene expression database: a software engineering
and implementation perspective},
journal = {Bioinform.},
volume = {21},
number = {8},
pages = {1495--1501},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti157},
doi = {10.1093/BIOINFORMATICS/BTI157},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SarkansPLOSACHRMSKSFRB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ParkinsonSSACCFLHKLMORRSSB05,
author = {Helen E. Parkinson and
Ugis Sarkans and
Mohammadreza Shojatalab and
Niran Abeygunawardena and
Sergio Contrino and
Richard Coulson and
Anna Farne and
Gonzalo Garcia Lara and
Ele Holloway and
Misha Kapushesky and
P. Lilja and
Gaurab Mukherjee and
Ahmet Oezcimen and
Tim F. Rayner and
Philippe Rocca{-}Serra and
Anjan Sharma and
Susanna{-}Assunta Sansone and
Alvis Brazma},
title = {ArrayExpress - a public repository for microarray gene expression
data at the {EBI}},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {553--555},
year = {2005},
url = {https://doi.org/10.1093/nar/gki056},
doi = {10.1093/NAR/GKI056},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ParkinsonSSACCFLHKLMORRSSB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BrazmaPSSVAHKKLORS03,
author = {Alvis Brazma and
Helen E. Parkinson and
Ugis Sarkans and
Mohammadreza Shojatalab and
Jaak Vilo and
Niran Abeygunawardena and
Ele Holloway and
Misha Kapushesky and
Patrick Kemmeren and
Gonzalo Garcia Lara and
Ahmet Oezcimen and
Philippe Rocca{-}Serra and
Susanna{-}Assunta Sansone},
title = {ArrayExpress - a public repository for microarray gene expression
data at the {EBI}},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {68--71},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg091},
doi = {10.1093/NAR/GKG091},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BrazmaPSSVAHKKLORS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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