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BibTeX records: Mert R. Sabuncu
@article{DBLP:journals/patterns/RajendranPSCZ024, author = {Suraj Rajendran and Weishen Pan and Mert R. Sabuncu and Yong Chen and Jiayu Zhou and Fei Wang}, title = {Learning across diverse biomedical data modalities and cohorts: Challenges and opportunities for innovation}, journal = {Patterns}, volume = {5}, number = {2}, pages = {100913}, year = {2024}, url = {https://doi.org/10.1016/j.patter.2023.100913}, doi = {10.1016/J.PATTER.2023.100913}, timestamp = {Thu, 29 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/patterns/RajendranPSCZ024.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wacv/0002WKS24, author = {Minh Nguyen and Alan Q. Wang and Heejong Kim and Mert R. Sabuncu}, title = {Robust Learning via Conditional Prevalence Adjustment}, booktitle = {{IEEE/CVF} Winter Conference on Applications of Computer Vision, {WACV} 2024, Waikoloa, HI, USA, January 3-8, 2024}, pages = {2729--2738}, publisher = {{IEEE}}, year = {2024}, url = {https://doi.org/10.1109/WACV57701.2024.00272}, doi = {10.1109/WACV57701.2024.00272}, timestamp = {Wed, 17 Apr 2024 07:41:22 +0200}, biburl = {https://dblp.org/rec/conf/wacv/0002WKS24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/MaWDS23, author = {Tianyu Ma and Alan Q. Wang and Adrian V. Dalca and Mert R. Sabuncu}, title = {Hyper-convolutions via implicit kernels for medical image analysis}, journal = {Medical Image Anal.}, volume = {86}, pages = {102796}, year = {2023}, url = {https://doi.org/10.1016/j.media.2023.102796}, doi = {10.1016/J.MEDIA.2023.102796}, timestamp = {Thu, 15 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/MaWDS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/WangYDS23, author = {Alan Q. Wang and Evan M. Yu and Adrian V. Dalca and Mert R. Sabuncu}, title = {A robust and interpretable deep learning framework for multi-modal registration via keypoints}, journal = {Medical Image Anal.}, volume = {90}, pages = {102962}, year = {2023}, url = {https://doi.org/10.1016/j.media.2023.102962}, doi = {10.1016/J.MEDIA.2023.102962}, timestamp = {Tue, 28 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/mia/WangYDS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/ZhangSZNLLKSW23, author = {Jinwei Zhang and Pascal Spincemaille and Hang Zhang and Thanh D. Nguyen and Chao Li and Jiahao Li and Ilhami Kovanlikaya and Mert R. Sabuncu and Yi Wang}, title = {{LARO:} Learned acquisition and reconstruction optimization to accelerate quantitative susceptibility mapping}, journal = {NeuroImage}, volume = {268}, pages = {119886}, year = {2023}, url = {https://doi.org/10.1016/j.neuroimage.2023.119886}, doi = {10.1016/J.NEUROIMAGE.2023.119886}, timestamp = {Tue, 28 Mar 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/ZhangSZNLLKSW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/npjdm/ZhouCCRFCDCWLSBWM23, author = {George Zhou and Yunchan Chen and Candace Chien and Leslie Revatta and Jannatul Ferdous and Michelle Chen and Shourov Deb and Sol De Leon Cruz and Alan Wang and Benjamin Lee and Mert R. Sabuncu and William Browne and Herrick Wun and Bobak Mosadegh}, title = {Deep learning analysis of blood flow sounds to detect arteriovenous fistula stenosis}, journal = {npj Digit. Medicine}, volume = {6}, year = {2023}, url = {https://doi.org/10.1038/s41746-023-00894-9}, doi = {10.1038/S41746-023-00894-9}, timestamp = {Sun, 31 Dec 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/npjdm/ZhouCCRFCDCWLSBWM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmlr/WangS23, author = {Alan Q. Wang and Mert R. Sabuncu}, title = {A Flexible Nadaraya-Watson Head Can Offer Explainable and Calibrated Classification}, journal = {Trans. Mach. Learn. Res.}, volume = {2023}, year = {2023}, url = {https://openreview.net/forum?id=iEq6lhG4O3}, timestamp = {Thu, 18 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmlr/WangS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccv/ButoiOMSGD23, author = {Victor Ion Butoi and Jose Javier Gonzalez Ortiz and Tianyu Ma and Mert R. Sabuncu and John V. Guttag and Adrian V. Dalca}, title = {UniverSeg: Universal Medical Image Segmentation}, booktitle = {{IEEE/CVF} International Conference on Computer Vision, {ICCV} 2023, Paris, France, October 1-6, 2023}, pages = {21381--21394}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/ICCV51070.2023.01960}, doi = {10.1109/ICCV51070.2023.01960}, timestamp = {Tue, 23 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iccv/ButoiOMSGD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iclr/RastogiSHLLDSK23, author = {Richa Rastogi and Yair Schiff and Alon Hacohen and Zhaozhi Li and Ian Lee and Yuntian Deng and Mert R. Sabuncu and Volodymyr Kuleshov}, title = {Semi-Parametric Inducing Point Networks and Neural Processes}, booktitle = {The Eleventh International Conference on Learning Representations, {ICLR} 2023, Kigali, Rwanda, May 1-5, 2023}, publisher = {OpenReview.net}, year = {2023}, url = {https://openreview.net/pdf?id=FE99-fDrWd5}, timestamp = {Fri, 30 Jun 2023 14:38:38 +0200}, biburl = {https://dblp.org/rec/conf/iclr/RastogiSHLLDSK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/BahadirLPS23, author = {Cagla Deniz Bahadir and Benjamin Liechty and David J. Pisapia and Mert R. Sabuncu}, editor = {Anirban Mukhopadhyay and Ilkay {\"{O}}ks{\"{u}}z and Sandy Engelhardt and Dajiang Zhu and Yixuan Yuan}, title = {Characterizing the Features of Mitotic Figures Using a Conditional Diffusion Probabilistic Model}, booktitle = {Deep Generative Models - Third {MICCAI} Workshop, {DGM4MICCAI} 2023, Held in Conjunction with {MICCAI} 2023, Vancouver, BC, Canada, October 8, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14533}, pages = {121--131}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-53767-7\_12}, doi = {10.1007/978-3-031-53767-7\_12}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/BahadirLPS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/KimBDS23, author = {Heejong Kim and Victor Ion Butoi and Adrian V. Dalca and Mert R. Sabuncu}, editor = {M. Emre Celebi and Md Sirajus Salekin and Hyunwoo J. Kim and Shadi Albarqouni and Catarina Barata and Allan Halpern and Philipp Tschandl and Marc Combalia and Yuan Liu and Ghada Zamzmi and Joshua Levy and Huzefa Rangwala and Annika Reinke and Diya Wynn and Bennett A. Landman and Won{-}Ki Jeong and Yiqing Shen and Zhongying Deng and Spyridon Bakas and Xiaoxiao Li and Chen Qin and Nicola Rieke and Holger Roth and Daguang Xu}, title = {Empirical Analysis of a Segmentation Foundation Model in Prostate Imaging}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2023 Workshops - {ISIC} 2023, Care-AI 2023, MedAGI 2023, DeCaF 2023, Held in Conjunction with {MICCAI} 2023, Vancouver, BC, Canada, October 8-12, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14393}, pages = {140--150}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-47401-9\_14}, doi = {10.1007/978-3-031-47401-9\_14}, timestamp = {Tue, 19 Dec 2023 16:57:58 +0100}, biburl = {https://dblp.org/rec/conf/miccai/KimBDS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/HeWS23, author = {Xinzi He and Alan Q. Wang and Mert R. Sabuncu}, editor = {Hayit Greenspan and Anant Madabhushi and Parvin Mousavi and Septimiu Salcudean and James Duncan and Tanveer F. Syeda{-}Mahmood and Russell H. Taylor}, title = {Neural Pre-processing: {A} Learning Framework for End-to-End Brain {MRI} Pre-processing}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part {VIII}}, series = {Lecture Notes in Computer Science}, volume = {14227}, pages = {258--267}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-43993-3\_25}, doi = {10.1007/978-3-031-43993-3\_25}, timestamp = {Thu, 05 Oct 2023 18:00:40 +0200}, biburl = {https://dblp.org/rec/conf/miccai/HeWS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midl/GuJKS23, author = {Zijin Gu and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, editor = {Ipek Oguz and Jack H. Noble and Xiaoxiao Li and Martin Styner and Christian Baumgartner and Mirabela Rusu and Tobias Heimann and Despina Kontos and Bennett A. Landman and Benoit M. Dawant}, title = {Decoding natural image stimuli from fMRI data with a surface-based convolutional network}, booktitle = {Medical Imaging with Deep Learning, {MIDL} 2023, 10-12 July 2023, Nashville, TN, {USA}}, series = {Proceedings of Machine Learning Research}, volume = {227}, pages = {107--118}, publisher = {{PMLR}}, year = {2023}, url = {https://proceedings.mlr.press/v227/gu24a.html}, timestamp = {Tue, 20 Feb 2024 17:19:52 +0100}, biburl = {https://dblp.org/rec/conf/midl/GuJKS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midl/KimS23, author = {Heejong Kim and Mert R. Sabuncu}, editor = {Ipek Oguz and Jack H. Noble and Xiaoxiao Li and Martin Styner and Christian Baumgartner and Mirabela Rusu and Tobias Heimann and Despina Kontos and Bennett A. Landman and Benoit M. Dawant}, title = {Learning to Compare Longitudinal Images}, booktitle = {Medical Imaging with Deep Learning, {MIDL} 2023, 10-12 July 2023, Nashville, TN, {USA}}, series = {Proceedings of Machine Learning Research}, volume = {227}, pages = {350--367}, publisher = {{PMLR}}, year = {2023}, url = {https://proceedings.mlr.press/v227/kim24a.html}, timestamp = {Tue, 20 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/midl/KimS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/nips/WangNS23, author = {Alan Wang and Minh Nguyen and Mert R. Sabuncu}, editor = {Alice Oh and Tristan Naumann and Amir Globerson and Kate Saenko and Moritz Hardt and Sergey Levine}, title = {Learning Invariant Representations with a Nonparametric Nadaraya-Watson Head}, booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans, LA, USA, December 10 - 16, 2023}, year = {2023}, url = {http://papers.nips.cc/paper\_files/paper/2023/hash/0f6931a9e339a012a9909306d7c758b4-Abstract-Conference.html}, timestamp = {Fri, 01 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/nips/WangNS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2303-12148, author = {Xinzi He and Alan Wang and Mert R. Sabuncu}, title = {Neural Pre-Processing: {A} Learning Framework for End-to-end Brain {MRI} Pre-processing}, journal = {CoRR}, volume = {abs/2303.12148}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2303.12148}, doi = {10.48550/ARXIV.2303.12148}, eprinttype = {arXiv}, eprint = {2303.12148}, timestamp = {Thu, 13 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2303-12148.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2304-02531, author = {Heejong Kim and Mert R. Sabuncu}, title = {Learning to Compare Longitudinal Images}, journal = {CoRR}, volume = {abs/2304.02531}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2304.02531}, doi = {10.48550/ARXIV.2304.02531}, eprinttype = {arXiv}, eprint = {2304.02531}, timestamp = {Thu, 20 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2304-02531.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2304-06131, author = {Victor Ion Butoi and Jose Javier Gonzalez Ortiz and Tianyu Ma and Mert R. Sabuncu and John V. Guttag and Adrian V. Dalca}, title = {UniverSeg: Universal Medical Image Segmentation}, journal = {CoRR}, volume = {abs/2304.06131}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2304.06131}, doi = {10.48550/ARXIV.2304.06131}, eprinttype = {arXiv}, eprint = {2304.06131}, timestamp = {Wed, 19 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2304-06131.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2304-09941, author = {Alan Q. Wang and Evan M. Yu and Adrian V. Dalca and Mert R. Sabuncu}, title = {A robust and interpretable deep learning framework for multi-modal registration via keypoints}, journal = {CoRR}, volume = {abs/2304.09941}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2304.09941}, doi = {10.48550/ARXIV.2304.09941}, eprinttype = {arXiv}, eprint = {2304.09941}, timestamp = {Mon, 24 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2304-09941.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2305-06217, author = {Suraj Rajendran and Weishen Pan and Mert R. Sabuncu and Yong Chen and Jiayu Zhou and Fei Wang}, title = {Patchwork Learning: {A} Paradigm Towards Integrative Analysis across Diverse Biomedical Data Sources}, journal = {CoRR}, volume = {abs/2305.06217}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2305.06217}, doi = {10.48550/ARXIV.2305.06217}, eprinttype = {arXiv}, eprint = {2305.06217}, timestamp = {Tue, 16 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2305-06217.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2307-03266, author = {Heejong Kim and Victor Ion Butoi and Adrian V. Dalca and Mert R. Sabuncu}, title = {Empirical Analysis of a Segmentation Foundation Model in Prostate Imaging}, journal = {CoRR}, volume = {abs/2307.03266}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2307.03266}, doi = {10.48550/ARXIV.2307.03266}, eprinttype = {arXiv}, eprint = {2307.03266}, timestamp = {Mon, 10 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2307-03266.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2309-13377, author = {Alan Q. Wang and Minh Nguyen and Mert R. Sabuncu}, title = {Learning Invariant Representations with a Nonparametric Nadaraya-Watson Head}, journal = {CoRR}, volume = {abs/2309.13377}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2309.13377}, doi = {10.48550/ARXIV.2309.13377}, eprinttype = {arXiv}, eprint = {2309.13377}, timestamp = {Wed, 27 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2309-13377.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2310-01685, author = {Alan Q. Wang and Batuhan K. Karaman and Heejong Kim and Jacob Rosenthal and Rachit Saluja and Sean I. Young and Mert R. Sabuncu}, title = {A Framework for Interpretability in Machine Learning for Medical Imaging}, journal = {CoRR}, volume = {abs/2310.01685}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2310.01685}, doi = {10.48550/ARXIV.2310.01685}, eprinttype = {arXiv}, eprint = {2310.01685}, timestamp = {Thu, 19 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2310-01685.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2310-03893, author = {Cagla Deniz Bahadir and Benjamin Liechty and David J. Pisapia and Mert R. Sabuncu}, title = {Characterizing the Features of Mitotic Figures Using a Conditional Diffusion Probabilistic Model}, journal = {CoRR}, volume = {abs/2310.03893}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2310.03893}, doi = {10.48550/ARXIV.2310.03893}, eprinttype = {arXiv}, eprint = {2310.03893}, timestamp = {Thu, 19 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2310-03893.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2310-14105, author = {Minh Nguyen and Gia H. Ngo and Mert R. Sabuncu}, title = {Zero-shot Learning of Individualized Task Contrast Prediction from Resting-state Functional Connectomes}, journal = {CoRR}, volume = {abs/2310.14105}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2310.14105}, doi = {10.48550/ARXIV.2310.14105}, eprinttype = {arXiv}, eprint = {2310.14105}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2310-14105.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2310-15766, author = {Minh Nguyen and Alan Q. Wang and Heejong Kim and Mert R. Sabuncu}, title = {Robust Learning via Conditional Prevalence Adjustment}, journal = {CoRR}, volume = {abs/2310.15766}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2310.15766}, doi = {10.48550/ARXIV.2310.15766}, eprinttype = {arXiv}, eprint = {2310.15766}, timestamp = {Tue, 31 Oct 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2310-15766.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/NgoNCS22, author = {Gia H. Ngo and Minh Nguyen and Nancy F. Chen and Mert R. Sabuncu}, title = {A transformer-Based neural language model that synthesizes brain activation maps from free-form text queries}, journal = {Medical Image Anal.}, volume = {81}, pages = {102540}, year = {2022}, url = {https://doi.org/10.1016/j.media.2022.102540}, doi = {10.1016/J.MEDIA.2022.102540}, timestamp = {Sun, 13 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/mia/NgoNCS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/GuJKAWSNKSK22, author = {Zijin Gu and Keith Jamison and Meenakshi Khosla and Emily J. Allen and Yihan Wu and Ghislain St{-}Yves and Thomas Naselaris and Kendrick N. Kay and Mert R. Sabuncu and Amy Kuceyeski}, title = {NeuroGen: Activation optimized image synthesis for discovery neuroscience}, journal = {NeuroImage}, volume = {247}, pages = {118812}, year = {2022}, url = {https://doi.org/10.1016/j.neuroimage.2021.118812}, doi = {10.1016/J.NEUROIMAGE.2021.118812}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/GuJKAWSNKSK22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/NgoKJKS22, author = {Gia H. Ngo and Meenakshi Khosla and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, title = {Predicting individual task contrasts from resting-state functional connectivity using a surface-based convolutional network}, journal = {NeuroImage}, volume = {248}, pages = {118849}, year = {2022}, url = {https://doi.org/10.1016/j.neuroimage.2021.118849}, doi = {10.1016/J.NEUROIMAGE.2021.118849}, timestamp = {Mon, 14 Feb 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/NgoKJKS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midl/MaLS22, author = {Tianyu Ma and Benjamin C. Lee and Mert R. Sabuncu}, editor = {Ender Konukoglu and Bjoern H. Menze and Archana Venkataraman and Christian F. Baumgartner and Qi Dou and Shadi Albarqouni}, title = {Label conditioned segmentation}, booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL} 2022, 6-8 July 2022, Zurich, Switzerland}, series = {Proceedings of Machine Learning Research}, volume = {172}, pages = {847--857}, publisher = {{PMLR}}, year = {2022}, url = {https://proceedings.mlr.press/v172/ma22a.html}, timestamp = {Fri, 17 Feb 2023 16:29:10 +0100}, biburl = {https://dblp.org/rec/conf/midl/MaLS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midl/YuWDS22, author = {Evan M. Yu and Alan Q. Wang and Adrian V. Dalca and Mert R. Sabuncu}, editor = {Ender Konukoglu and Bjoern H. Menze and Archana Venkataraman and Christian F. Baumgartner and Qi Dou and Shadi Albarqouni}, title = {KeyMorph: Robust Multi-modal Affine Registration via Unsupervised Keypoint Detection}, booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL} 2022, 6-8 July 2022, Zurich, Switzerland}, series = {Proceedings of Machine Learning Research}, volume = {172}, pages = {1482--1503}, publisher = {{PMLR}}, year = {2022}, url = {https://proceedings.mlr.press/v172/yu22a.html}, timestamp = {Fri, 17 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/midl/YuWDS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/nips/KhoslaJKS22, author = {Meenakshi Khosla and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, editor = {Sanmi Koyejo and S. Mohamed and A. Agarwal and Danielle Belgrave and K. Cho and A. Oh}, title = {Characterizing the Ventral Visual Stream with Response-Optimized Neural Encoding Models}, booktitle = {Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, NeurIPS 2022, New Orleans, LA, USA, November 28 - December 9, 2022}, year = {2022}, url = {http://papers.nips.cc/paper\_files/paper/2022/hash/3d278eebf6e555e6efd050817d774586-Abstract-Conference.html}, timestamp = {Mon, 08 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/nips/KhoslaJKS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wacv/MaDS22, author = {Tianyu Ma and Adrian V. Dalca and Mert R. Sabuncu}, title = {Hyper-Convolution Networks for Biomedical Image Segmentation}, booktitle = {{IEEE/CVF} Winter Conference on Applications of Computer Vision, {WACV} 2022, Waikoloa, HI, USA, January 3-8, 2022}, pages = {1989--1998}, publisher = {{IEEE}}, year = {2022}, url = {https://doi.org/10.1109/WACV51458.2022.00205}, doi = {10.1109/WACV51458.2022.00205}, timestamp = {Thu, 17 Feb 2022 14:50:06 +0100}, biburl = {https://dblp.org/rec/conf/wacv/MaDS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2202-02245, author = {Zijin Gu and Keith Jamison and Mert R. Sabuncu and Amy Kuceyeski}, title = {Personalized visual encoding model construction with small data}, journal = {CoRR}, volume = {abs/2202.02245}, year = {2022}, url = {https://arxiv.org/abs/2202.02245}, eprinttype = {arXiv}, eprint = {2202.02245}, timestamp = {Thu, 10 Feb 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2202-02245.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2202-02701, author = {Tianyu Ma and Alan Q. Wang and Adrian V. Dalca and Mert R. Sabuncu}, title = {Hyper-Convolutions via Implicit Kernels for Medical Imaging}, journal = {CoRR}, volume = {abs/2202.02701}, year = {2022}, url = {https://arxiv.org/abs/2202.02701}, eprinttype = {arXiv}, eprint = {2202.02701}, timestamp = {Thu, 10 Feb 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2202-02701.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2202-11009, author = {Alan Q. Wang and Adrian V. Dalca and Mert R. Sabuncu}, title = {Computing Multiple Image Reconstructions with a Single Hypernetwork}, journal = {CoRR}, volume = {abs/2202.11009}, year = {2022}, url = {https://arxiv.org/abs/2202.11009}, eprinttype = {arXiv}, eprint = {2202.11009}, timestamp = {Wed, 02 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2202-11009.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2203-10091, author = {Tianyu Ma and Benjamin C. Lee and Mert R. Sabuncu}, title = {Label conditioned segmentation}, journal = {CoRR}, volume = {abs/2203.10091}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2203.10091}, doi = {10.48550/ARXIV.2203.10091}, eprinttype = {arXiv}, eprint = {2203.10091}, timestamp = {Wed, 30 Mar 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2203-10091.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2205-11718, author = {Richa Rastogi and Yuntian Deng and Ian Lee and Mert R. Sabuncu and Volodymyr Kuleshov}, title = {Semi-Parametric Deep Neural Networks in Linear Time and Memory}, journal = {CoRR}, volume = {abs/2205.11718}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2205.11718}, doi = {10.48550/ARXIV.2205.11718}, eprinttype = {arXiv}, eprint = {2205.11718}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2205-11718.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2208-00840, author = {Gia H. Ngo and Minh Nguyen and Nancy F. Chen and Mert R. Sabuncu}, title = {A Transformer-based Neural Language Model that Synthesizes Brain Activation Maps from Free-Form Text Queries}, journal = {CoRR}, volume = {abs/2208.00840}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2208.00840}, doi = {10.48550/ARXIV.2208.00840}, eprinttype = {arXiv}, eprint = {2208.00840}, timestamp = {Wed, 10 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2208-00840.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2210-07416, author = {Minh Nguyen and Gia H. Ngo and Mert R. Sabuncu}, title = {{GLACIAL:} Granger and Learning-based Causality Analysis for Longitudinal Studies}, journal = {CoRR}, volume = {abs/2210.07416}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2210.07416}, doi = {10.48550/ARXIV.2210.07416}, eprinttype = {arXiv}, eprint = {2210.07416}, timestamp = {Tue, 18 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2210-07416.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2211-00725, author = {Jinwei Zhang and Pascal Spincemaille and Hang Zhang and Thanh D. Nguyen and Chao Li and Jiahao Li and Ilhami Kovanlikaya and Mert R. Sabuncu and Yi Wang}, title = {{LARO:} Learned Acquisition and Reconstruction Optimization to accelerate Quantitative Susceptibility Mapping}, journal = {CoRR}, volume = {abs/2211.00725}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2211.00725}, doi = {10.48550/ARXIV.2211.00725}, eprinttype = {arXiv}, eprint = {2211.00725}, timestamp = {Mon, 07 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2211-00725.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2212-02409, author = {Zijin Gu and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, title = {Decoding natural image stimuli from fMRI data with a surface-based convolutional network}, journal = {CoRR}, volume = {abs/2212.02409}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2212.02409}, doi = {10.48550/ARXIV.2212.02409}, eprinttype = {arXiv}, eprint = {2212.02409}, timestamp = {Thu, 08 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2212-02409.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2212-03411, author = {Alan Q. Wang and Mert R. Sabuncu}, title = {A Simple Nadaraya-Watson Head can offer Explainable and Calibrated Classification}, journal = {CoRR}, volume = {abs/2212.03411}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2212.03411}, doi = {10.48550/ARXIV.2212.03411}, eprinttype = {arXiv}, eprint = {2212.03411}, timestamp = {Mon, 02 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2212-03411.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/WangDS21, author = {Alan Q. Wang and Adrian V. Dalca and Mert R. Sabuncu}, editor = {Nandinee Fariah Haq and Patricia Johnson and Andreas Maier and Tobias W{\"{u}}rfl and Jaejun Yoo}, title = {HyperRecon: Regularization-Agnostic {CS-MRI} Reconstruction with Hypernetworks}, booktitle = {Machine Learning for Medical Image Reconstruction - 4th International Workshop, {MLMIR} 2021, Held in Conjunction with {MICCAI} 2021, Strasbourg, France, October 1, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12964}, pages = {3--13}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-88552-6\_1}, doi = {10.1007/978-3-030-88552-6\_1}, timestamp = {Thu, 14 Oct 2021 16:58:44 +0200}, biburl = {https://dblp.org/rec/conf/miccai/WangDS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/WangLMXS21, author = {Alan Q. Wang and Aaron K. LaViolette and Leo Moon and Chris Xu and Mert R. Sabuncu}, editor = {Marleen de Bruijne and Philippe C. Cattin and St{\'{e}}phane Cotin and Nicolas Padoy and Stefanie Speidel and Yefeng Zheng and Caroline Essert}, title = {Joint Optimization of Hadamard Sensing and Reconstruction in Compressed Sensing Fluorescence Microscopy}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2021 - 24th International Conference, Strasbourg, France, September 27 - October 1, 2021, Proceedings, Part {VI}}, series = {Lecture Notes in Computer Science}, volume = {12906}, pages = {129--139}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-87231-1\_13}, doi = {10.1007/978-3-030-87231-1\_13}, timestamp = {Tue, 21 Dec 2021 17:19:23 +0100}, biburl = {https://dblp.org/rec/conf/miccai/WangLMXS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ZhangZLSSNW21, author = {Jinwei Zhang and Hang Zhang and Chao Li and Pascal Spincemaille and Mert R. Sabuncu and Thanh D. Nguyen and Yi Wang}, editor = {Marleen de Bruijne and Philippe C. Cattin and St{\'{e}}phane Cotin and Nicolas Padoy and Stefanie Speidel and Yefeng Zheng and Caroline Essert}, title = {Temporal Feature Fusion with Sampling Pattern Optimization for Multi-echo Gradient Echo Acquisition and Image Reconstruction}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2021 - 24th International Conference, Strasbourg, France, September 27 - October 1, 2021, Proceedings, Part {VI}}, series = {Lecture Notes in Computer Science}, volume = {12906}, pages = {232--242}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-87231-1\_23}, doi = {10.1007/978-3-030-87231-1\_23}, timestamp = {Tue, 28 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/ZhangZLSSNW21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/NgoNCS21, author = {Gia H. Ngo and Minh Nguyen and Nancy F. Chen and Mert R. Sabuncu}, editor = {Marleen de Bruijne and Philippe C. Cattin and St{\'{e}}phane Cotin and Nicolas Padoy and Stefanie Speidel and Yefeng Zheng and Caroline Essert}, title = {Text2Brain: Synthesis of Brain Activation Maps from Free-Form Text Query}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2021 - 24th International Conference, Strasbourg, France, September 27 - October 1, 2021, Proceedings, Part {VII}}, series = {Lecture Notes in Computer Science}, volume = {12907}, pages = {605--614}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-87234-2\_57}, doi = {10.1007/978-3-030-87234-2\_57}, timestamp = {Tue, 21 Dec 2021 17:19:23 +0100}, biburl = {https://dblp.org/rec/conf/miccai/NgoNCS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midl/ZhangZSNS021, author = {Jinwei Zhang and Hang Zhang and Pascal Spincemaille and Thanh D. Nguyen and Mert R. Sabuncu and Yi Wang}, editor = {Mattias P. Heinrich and Qi Dou and Marleen de Bruijne and Jan Lellmann and Alexander Schlaefer and Floris Ernst}, title = {Hybrid optimization between iterative and network fine-tuning reconstructions for fast quantitative susceptibility mapping}, booktitle = {Medical Imaging with Deep Learning, 7-9 July 2021, L{\"{u}}beck, Germany}, series = {Proceedings of Machine Learning Research}, volume = {143}, pages = {870--880}, publisher = {{PMLR}}, year = {2021}, url = {https://proceedings.mlr.press/v143/zhang21c.html}, timestamp = {Tue, 13 Dec 2022 14:39:07 +0100}, biburl = {https://dblp.org/rec/conf/midl/ZhangZSNS021.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wacv/MaZOVNGWS21, author = {Tianyu Ma and Hang Zhang and Hanley Ong and Amar Vora and Thanh D. Nguyen and Ajay Gupta and Yi Wang and Mert R. Sabuncu}, title = {Ensembling Low Precision Models for Binary Biomedical Image Segmentation}, booktitle = {{IEEE} Winter Conference on Applications of Computer Vision, {WACV} 2021, Waikoloa, HI, USA, January 3-8, 2021}, pages = {325--334}, publisher = {{IEEE}}, year = {2021}, url = {https://doi.org/10.1109/WACV48630.2021.00037}, doi = {10.1109/WACV48630.2021.00037}, timestamp = {Wed, 11 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wacv/MaZOVNGWS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wacv/ShenZSS21, author = {Yichen Shen and Zhilu Zhang and Mert R. Sabuncu and Lin Sun}, title = {Real-Time Uncertainty Estimation in Computer Vision via Uncertainty-Aware Distribution Distillation}, booktitle = {{IEEE} Winter Conference on Applications of Computer Vision, {WACV} 2021, Waikoloa, HI, USA, January 3-8, 2021}, pages = {707--716}, publisher = {{IEEE}}, year = {2021}, url = {https://doi.org/10.1109/WACV48630.2021.00075}, doi = {10.1109/WACV48630.2021.00075}, timestamp = {Fri, 18 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wacv/ShenZSS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2101-02194, author = {Alan Q. Wang and Adrian V. Dalca and Mert R. Sabuncu}, title = {Regularization-Agnostic Compressed Sensing {MRI} Reconstruction with Hypernetworks}, journal = {CoRR}, volume = {abs/2101.02194}, year = {2021}, url = {https://arxiv.org/abs/2101.02194}, eprinttype = {arXiv}, eprint = {2101.02194}, timestamp = {Sun, 24 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2101-02194.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2105-07140, author = {Zijin Gu and Keith Jamison and Meenakshi Khosla and Emily J. Allen and Yihan Wu and Thomas Naselaris and Kendrick N. Kay and Mert R. Sabuncu and Amy Kuceyeski}, title = {NeuroGen: activation optimized image synthesis for discovery neuroscience}, journal = {CoRR}, volume = {abs/2105.07140}, year = {2021}, url = {https://arxiv.org/abs/2105.07140}, eprinttype = {arXiv}, eprint = {2105.07140}, timestamp = {Tue, 11 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2105-07140.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2105-07961, author = {Alan Q. Wang and Aaron K. LaViolette and Leo Moon and Chris Xu and Mert R. Sabuncu}, title = {Joint Optimization of Hadamard Sensing and Reconstruction in Compressed Sensing Fluorescence Microscopy}, journal = {CoRR}, volume = {abs/2105.07961}, year = {2021}, url = {https://arxiv.org/abs/2105.07961}, eprinttype = {arXiv}, eprint = {2105.07961}, timestamp = {Tue, 18 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2105-07961.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2105-10559, author = {Tianyu Ma and Adrian V. Dalca and Mert R. Sabuncu}, title = {Hyper-Convolution Networks for Biomedical Image Segmentation}, journal = {CoRR}, volume = {abs/2105.10559}, year = {2021}, url = {https://arxiv.org/abs/2105.10559}, eprinttype = {arXiv}, eprint = {2105.10559}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2105-10559.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2106-04767, author = {Zhilu Zhang and Vianne R. Gao and Mert R. Sabuncu}, title = {Ex uno plures: Splitting One Model into an Ensemble of Subnetworks}, journal = {CoRR}, volume = {abs/2106.04767}, year = {2021}, url = {https://arxiv.org/abs/2106.04767}, eprinttype = {arXiv}, eprint = {2106.04767}, timestamp = {Tue, 15 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2106-04767.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2109-13814, author = {Gia H. Ngo and Minh Nguyen and Nancy F. Chen and Mert R. Sabuncu}, title = {Text2Brain: Synthesis of Brain Activation Maps from Free-form Text Query}, journal = {CoRR}, volume = {abs/2109.13814}, year = {2021}, url = {https://arxiv.org/abs/2109.13814}, eprinttype = {arXiv}, eprint = {2109.13814}, timestamp = {Mon, 04 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2109-13814.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/HeKHNSEBFY20, author = {Tong He and Ru Kong and Avram J. Holmes and Minh Nguyen and Mert R. Sabuncu and Simon B. Eickhoff and Danilo Bzdok and Jiashi Feng and B. T. Thomas Yeo}, title = {Deep neural networks and kernel regression achieve comparable accuracies for functional connectivity prediction of behavior and demographics}, journal = {NeuroImage}, volume = {206}, year = {2020}, url = {https://doi.org/10.1016/j.neuroimage.2019.116276}, doi = {10.1016/J.NEUROIMAGE.2019.116276}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/HeKHNSEBFY20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/ZhangLZZSNSW20, author = {Jinwei Zhang and Zhe Liu and Shun Zhang and Hang Zhang and Pascal Spincemaille and Thanh D. Nguyen and Mert R. Sabuncu and Yi Wang}, title = {Fidelity imposed network edit {(FINE)} for solving ill-posed image reconstruction}, journal = {NeuroImage}, volume = {211}, pages = {116579}, year = {2020}, url = {https://doi.org/10.1016/j.neuroimage.2020.116579}, doi = {10.1016/J.NEUROIMAGE.2020.116579}, timestamp = {Thu, 20 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/ZhangLZZSNSW20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tci/BahadirWDS20, author = {Cagla Deniz Bahadir and Alan Q. Wang and Adrian V. Dalca and Mert R. Sabuncu}, title = {Deep-Learning-Based Optimization of the Under-Sampling Pattern in {MRI}}, journal = {{IEEE} Trans. Computational Imaging}, volume = {6}, pages = {1139--1152}, year = {2020}, url = {https://doi.org/10.1109/TCI.2020.3006727}, doi = {10.1109/TCI.2020.3006727}, timestamp = {Tue, 06 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tci/BahadirWDS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cvpr/ChangQZSCZM20, author = {Qi Chang and Hui Qu and Yikai Zhang and Mert R. Sabuncu and Chao Chen and Tong Zhang and Dimitris N. Metaxas}, title = {Synthetic Learning: Learn From Distributed Asynchronized Discriminator {GAN} Without Sharing Medical Image Data}, booktitle = {2020 {IEEE/CVF} Conference on Computer Vision and Pattern Recognition, {CVPR} 2020, Seattle, WA, USA, June 13-19, 2020}, pages = {13853--13863}, publisher = {Computer Vision Foundation / {IEEE}}, year = {2020}, url = {https://openaccess.thecvf.com/content\_CVPR\_2020/html/Chang\_Synthetic\_Learning\_Learn\_From\_Distributed\_Asynchronized\_Discriminator\_GAN\_Without\_Sharing\_CVPR\_2020\_paper.html}, doi = {10.1109/CVPR42600.2020.01387}, timestamp = {Tue, 31 Aug 2021 14:00:04 +0200}, biburl = {https://dblp.org/rec/conf/cvpr/ChangQZSCZM20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/MaGS20, author = {Tianyu Ma and Ajay Gupta and Mert R. Sabuncu}, title = {Volumetric Landmark Detection with a Multi-Scale Shift Equivariant Neural Network}, booktitle = {17th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2020, Iowa City, IA, USA, April 3-7, 2020}, pages = {981--985}, publisher = {{IEEE}}, year = {2020}, url = {https://doi.org/10.1109/ISBI45749.2020.9098620}, doi = {10.1109/ISBI45749.2020.9098620}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/MaGS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/WangDS20, author = {Alan Q. Wang and Adrian V. Dalca and Mert R. Sabuncu}, editor = {Farah Deeba and Patricia Johnson and Tobias W{\"{u}}rfl and Jong Chul Ye}, title = {Neural Network-Based Reconstruction in Compressed Sensing {MRI} Without Fully-Sampled Training Data}, booktitle = {Machine Learning for Medical Image Reconstruction - Third International Workshop, {MLMIR} 2020, Held in Conjunction with {MICCAI} 2020, Lima, Peru, October 8, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12450}, pages = {27--37}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-61598-7\_3}, doi = {10.1007/978-3-030-61598-7\_3}, timestamp = {Mon, 02 Nov 2020 18:32:01 +0100}, biburl = {https://dblp.org/rec/conf/miccai/WangDS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/NgoKJKS20, author = {Gia H. Ngo and Meenakshi Khosla and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, editor = {Anne L. Martel and Purang Abolmaesumi and Danail Stoyanov and Diana Mateus and Maria A. Zuluaga and S. Kevin Zhou and Daniel Racoceanu and Leo Joskowicz}, title = {From Connectomic to Task-Evoked Fingerprints: Individualized Prediction of Task Contrasts from Resting-State Functional Connectivity}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020, Proceedings, Part {VII}}, series = {Lecture Notes in Computer Science}, volume = {12267}, pages = {62--71}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-59728-3\_7}, doi = {10.1007/978-3-030-59728-3\_7}, timestamp = {Mon, 26 Apr 2021 14:27:06 +0200}, biburl = {https://dblp.org/rec/conf/miccai/NgoKJKS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ZhangZWZSSNW20, author = {Jinwei Zhang and Hang Zhang and Alan Wang and Qihao Zhang and Mert R. Sabuncu and Pascal Spincemaille and Thanh D. Nguyen and Yi Wang}, editor = {Farah Deeba and Patricia Johnson and Tobias W{\"{u}}rfl and Jong Chul Ye}, title = {Extending {LOUPE} for K-Space Under-Sampling Pattern Optimization in Multi-coil {MRI}}, booktitle = {Machine Learning for Medical Image Reconstruction - Third International Workshop, {MLMIR} 2020, Held in Conjunction with {MICCAI} 2020, Lima, Peru, October 8, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12450}, pages = {91--101}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-61598-7\_9}, doi = {10.1007/978-3-030-61598-7\_9}, timestamp = {Fri, 27 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/ZhangZWZSSNW20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/YuDS20, author = {Evan M. Yu and Adrian V. Dalca and Mert R. Sabuncu}, editor = {Mingxia Liu and Pingkun Yan and Chunfeng Lian and Xiaohuan Cao}, title = {Learning Conditional Deformable Shape Templates for Brain Anatomy}, booktitle = {Machine Learning in Medical Imaging - 11th International Workshop, {MLMI} 2020, Held in Conjunction with {MICCAI} 2020, Lima, Peru, October 4, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12436}, pages = {353--362}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-59861-7\_36}, doi = {10.1007/978-3-030-59861-7\_36}, timestamp = {Tue, 18 Jan 2022 13:58:27 +0100}, biburl = {https://dblp.org/rec/conf/miccai/YuDS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/KhoslaNJKS20, author = {Meenakshi Khosla and Gia H. Ngo and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, editor = {Anne L. Martel and Purang Abolmaesumi and Danail Stoyanov and Diana Mateus and Maria A. Zuluaga and S. Kevin Zhou and Daniel Racoceanu and Leo Joskowicz}, title = {A Shared Neural Encoding Model for the Prediction of Subject-Specific fMRI Response}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020, Proceedings, Part {VII}}, series = {Lecture Notes in Computer Science}, volume = {12267}, pages = {539--548}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-59728-3\_53}, doi = {10.1007/978-3-030-59728-3\_53}, timestamp = {Tue, 06 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/KhoslaNJKS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midl/YuIDS20, author = {Evan M. Yu and Juan Eugenio Iglesias and Adrian V. Dalca and Mert R. Sabuncu}, editor = {Tal Arbel and Ismail Ben Ayed and Marleen de Bruijne and Maxime Descoteaux and Herv{\'{e}} Lombaert and Christopher Pal}, title = {An Auto-Encoder Strategy for Adaptive Image Segmentation}, booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL} 2020, 6-8 July 2020, Montr{\'{e}}al, QC, Canada}, series = {Proceedings of Machine Learning Research}, volume = {121}, pages = {881--891}, publisher = {{PMLR}}, year = {2020}, url = {http://proceedings.mlr.press/v121/yu20a.html}, timestamp = {Fri, 27 Nov 2020 12:58:38 +0100}, biburl = {https://dblp.org/rec/conf/midl/YuIDS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midl/Zhang0SSN020, author = {Jinwei Zhang and Hang Zhang and Mert R. Sabuncu and Pascal Spincemaille and Thanh D. Nguyen and Yi Wang}, editor = {Tal Arbel and Ismail Ben Ayed and Marleen de Bruijne and Maxime Descoteaux and Herv{\'{e}} Lombaert and Christopher Pal}, title = {Bayesian Learning of Probabilistic Dipole Inversion for Quantitative Susceptibility Mapping}, booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL} 2020, 6-8 July 2020, Montr{\'{e}}al, QC, Canada}, series = {Proceedings of Machine Learning Research}, volume = {121}, pages = {892--902}, publisher = {{PMLR}}, year = {2020}, url = {http://proceedings.mlr.press/v121/zhang20b.html}, timestamp = {Fri, 27 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/midl/Zhang0SSN020.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/nips/KhoslaNJKS20, author = {Meenakshi Khosla and Gia H. Ngo and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, editor = {Hugo Larochelle and Marc'Aurelio Ranzato and Raia Hadsell and Maria{-}Florina Balcan and Hsuan{-}Tien Lin}, title = {Neural encoding with visual attention}, booktitle = {Advances in Neural Information Processing Systems 33: Annual Conference on Neural Information Processing Systems 2020, NeurIPS 2020, December 6-12, 2020, virtual}, year = {2020}, url = {https://proceedings.neurips.cc/paper/2020/hash/b71f5aaf3371c2cdfb7a7c0497f569d4-Abstract.html}, timestamp = {Tue, 19 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/nips/KhoslaNJKS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/nips/ZhangS20, author = {Zhilu Zhang and Mert R. Sabuncu}, editor = {Hugo Larochelle and Marc'Aurelio Ranzato and Raia Hadsell and Maria{-}Florina Balcan and Hsuan{-}Tien Lin}, title = {Self-Distillation as Instance-Specific Label Smoothing}, booktitle = {Advances in Neural Information Processing Systems 33: Annual Conference on Neural Information Processing Systems 2020, NeurIPS 2020, December 6-12, 2020, virtual}, year = {2020}, url = {https://proceedings.neurips.cc/paper/2020/hash/1731592aca5fb4d789c4119c65c10b4b-Abstract.html}, timestamp = {Tue, 19 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/nips/ZhangS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2002-12470, author = {Hang Zhang and Jinwei Zhang and Qihao Zhang and Jeremy Kim and Shun Zhang and Susan A. Gauthier and Pascal Spincemaille and Thanh D. Nguyen and Mert R. Sabuncu and Yi Wang}, title = {RSANet: Recurrent Slice-wise Attention Network for Multiple Sclerosis Lesion Segmentation}, journal = {CoRR}, volume = {abs/2002.12470}, year = {2020}, url = {https://arxiv.org/abs/2002.12470}, eprinttype = {arXiv}, eprint = {2002.12470}, timestamp = {Tue, 03 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2002-12470.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2003-01639, author = {Tianyu Ma and Ajay Gupta and Mert R. Sabuncu}, title = {Volumetric landmark detection with a multi-scale shift equivariant neural network}, journal = {CoRR}, volume = {abs/2003.01639}, year = {2020}, url = {https://arxiv.org/abs/2003.01639}, eprinttype = {arXiv}, eprint = {2003.01639}, timestamp = {Tue, 10 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2003-01639.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2004-13903, author = {Evan M. Yu and Juan Eugenio Iglesias and Adrian V. Dalca and Mert R. Sabuncu}, title = {An Auto-Encoder Strategy for Adaptive Image Segmentation}, journal = {CoRR}, volume = {abs/2004.13903}, year = {2020}, url = {https://arxiv.org/abs/2004.13903}, eprinttype = {arXiv}, eprint = {2004.13903}, timestamp = {Sun, 03 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2004-13903.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2006-00080, author = {Qi Chang and Hui Qu and Yikai Zhang and Mert R. Sabuncu and Chao Chen and Tong Zhang and Dimitris N. Metaxas}, title = {Synthetic Learning: Learn From Distributed Asynchronized Discriminator {GAN} Without Sharing Medical Image Data}, journal = {CoRR}, volume = {abs/2006.00080}, year = {2020}, url = {https://arxiv.org/abs/2006.00080}, eprinttype = {arXiv}, eprint = {2006.00080}, timestamp = {Thu, 17 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2006-00080.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2006-05065, author = {Zhilu Zhang and Mert R. Sabuncu}, title = {Self-Distillation as Instance-Specific Label Smoothing}, journal = {CoRR}, volume = {abs/2006.05065}, year = {2020}, url = {https://arxiv.org/abs/2006.05065}, eprinttype = {arXiv}, eprint = {2006.05065}, timestamp = {Fri, 12 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2006-05065.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2006-15802, author = {Meenakshi Khosla and Gia H. Ngo and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, title = {A shared neural encoding model for the prediction of subject-specific fMRI response}, journal = {CoRR}, volume = {abs/2006.15802}, year = {2020}, url = {https://arxiv.org/abs/2006.15802}, eprinttype = {arXiv}, eprint = {2006.15802}, timestamp = {Thu, 02 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2006-15802.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2007-14450, author = {Jinwei Zhang and Hang Zhang and Alan Wang and Qihao Zhang and Mert R. Sabuncu and Pascal Spincemaille and Thanh D. Nguyen and Yi Wang}, title = {Extending {LOUPE} for K-space Under-sampling Pattern Optimization in Multi-coil {MRI}}, journal = {CoRR}, volume = {abs/2007.14450}, year = {2020}, url = {https://arxiv.org/abs/2007.14450}, eprinttype = {arXiv}, eprint = {2007.14450}, timestamp = {Tue, 03 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2007-14450.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2007-14979, author = {Alan Q. Wang and Adrian V. Dalca and Mert R. Sabuncu}, title = {Neural Network-based Reconstruction in Compressed Sensing {MRI} Without Fully-sampled Training Data}, journal = {CoRR}, volume = {abs/2007.14979}, year = {2020}, url = {https://arxiv.org/abs/2007.14979}, eprinttype = {arXiv}, eprint = {2007.14979}, timestamp = {Mon, 03 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2007-14979.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2007-15857, author = {Yichen Shen and Zhilu Zhang and Mert R. Sabuncu and Lin Sun}, title = {Learning the Distribution: {A} Unified Distillation Paradigm for Fast Uncertainty Estimation in Computer Vision}, journal = {CoRR}, volume = {abs/2007.15857}, year = {2020}, url = {https://arxiv.org/abs/2007.15857}, eprinttype = {arXiv}, eprint = {2007.15857}, timestamp = {Mon, 03 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2007-15857.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2008-02961, author = {Gia H. Ngo and Meenakshi Khosla and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, title = {From Connectomic to Task-evoked Fingerprints: Individualized Prediction of Task Contrasts from Resting-state Functional Connectivity}, journal = {CoRR}, volume = {abs/2008.02961}, year = {2020}, url = {https://arxiv.org/abs/2008.02961}, eprinttype = {arXiv}, eprint = {2008.02961}, timestamp = {Fri, 14 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2008-02961.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2008-07496, author = {Mert R. Sabuncu}, title = {Intelligence plays dice: Stochasticity is essential for machine learning}, journal = {CoRR}, volume = {abs/2008.07496}, year = {2020}, url = {https://arxiv.org/abs/2008.07496}, eprinttype = {arXiv}, eprint = {2008.07496}, timestamp = {Fri, 21 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2008-07496.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2010-00516, author = {Meenakshi Khosla and Gia H. Ngo and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, title = {Neural encoding with visual attention}, journal = {CoRR}, volume = {abs/2010.00516}, year = {2020}, url = {https://arxiv.org/abs/2010.00516}, eprinttype = {arXiv}, eprint = {2010.00516}, timestamp = {Mon, 12 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2010-00516.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2010-04757, author = {Adrian V. Dalca and Ramesh Sridharan and Mert R. Sabuncu and Polina Golland}, title = {Predictive Modeling of Anatomy with Genetic and Clinical Data}, journal = {CoRR}, volume = {abs/2010.04757}, year = {2020}, url = {https://arxiv.org/abs/2010.04757}, eprinttype = {arXiv}, eprint = {2010.04757}, timestamp = {Tue, 20 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2010-04757.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2010-08648, author = {Tianyu Ma and Hang Zhang and Hanley Ong and Amar Vora and Thanh D. Nguyen and Ajay Gupta and Yi Wang and Mert R. Sabuncu}, title = {Ensembling Low Precision Models for Binary Biomedical Image Segmentation}, journal = {CoRR}, volume = {abs/2010.08648}, year = {2020}, url = {https://arxiv.org/abs/2010.08648}, eprinttype = {arXiv}, eprint = {2010.08648}, timestamp = {Sat, 05 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2010-08648.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/aisy/LiuSALOMDSM19, author = {Jun Liu and Gurpreet Singh and Subhi Al'Aref and Benjamin C. Lee and Olachi Oleru and James K. Min and Simon Dunham and Mert R. Sabuncu and Bobak Mosadegh}, title = {Image Registration in Medical Robotics and Intelligent Systems: Fundamentals and Applications}, journal = {Adv. Intell. Syst.}, volume = {1}, number = {6}, pages = {1900048}, year = {2019}, url = {https://doi.org/10.1002/aisy.201900048}, doi = {10.1002/AISY.201900048}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/aisy/LiuSALOMDSM19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/DalcaBGS19, author = {Adrian V. Dalca and Guha Balakrishnan and John V. Guttag and Mert R. Sabuncu}, title = {Unsupervised learning of probabilistic diffeomorphic registration for images and surfaces}, journal = {Medical Image Anal.}, volume = {57}, pages = {226--236}, year = {2019}, url = {https://doi.org/10.1016/j.media.2019.07.006}, doi = {10.1016/J.MEDIA.2019.07.006}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/DalcaBGS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/LiKLOTSHSGY19, author = {Jingwei Li and Ru Kong and Rapha{\"{e}}l Li{\'{e}}geois and Csaba Orban and Yanrui Tan and Nanbo Sun and Avram J. Holmes and Mert R. Sabuncu and Tian Ge and B. T. Thomas Yeo}, title = {Global signal regression strengthens association between resting-state functional connectivity and behavior}, journal = {NeuroImage}, volume = {196}, pages = {126--141}, year = {2019}, url = {https://doi.org/10.1016/j.neuroimage.2019.04.016}, doi = {10.1016/J.NEUROIMAGE.2019.04.016}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/LiKLOTSHSGY19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/KhoslaJKS19, author = {Meenakshi Khosla and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, title = {Ensemble learning with 3D convolutional neural networks for functional connectome-based prediction}, journal = {NeuroImage}, volume = {199}, pages = {651--662}, year = {2019}, url = {https://doi.org/10.1016/j.neuroimage.2019.06.012}, doi = {10.1016/J.NEUROIMAGE.2019.06.012}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/KhoslaJKS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/SunMCSYI19, author = {Nanbo Sun and Elizabeth C. Mormino and Jianzhong Chen and Mert R. Sabuncu and B. T. Thomas Yeo and Alzheimer's Disease Neuroimaging Initiative}, title = {Multi-modal latent factor exploration of atrophy, cognitive and tau heterogeneity in Alzheimer's disease}, journal = {NeuroImage}, volume = {201}, year = {2019}, url = {https://doi.org/10.1016/j.neuroimage.2019.116043}, doi = {10.1016/J.NEUROIMAGE.2019.116043}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/SunMCSYI19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/DalcaBFRSG19, author = {Adrian V. Dalca and Katherine L. Bouman and William T. Freeman and Natalia S. Rost and Mert R. Sabuncu and Polina Golland}, title = {Medical Image Imputation From Image Collections}, journal = {{IEEE} Trans. Medical Imaging}, volume = {38}, number = {2}, pages = {504--514}, year = {2019}, url = {https://doi.org/10.1109/TMI.2018.2866692}, doi = {10.1109/TMI.2018.2866692}, timestamp = {Thu, 18 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/DalcaBFRSG19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/BalakrishnanZSG19, author = {Guha Balakrishnan and Amy Zhao and Mert R. Sabuncu and John V. Guttag and Adrian V. Dalca}, title = {VoxelMorph: {A} Learning Framework for Deformable Medical Image Registration}, journal = {{IEEE} Trans. Medical Imaging}, volume = {38}, number = {8}, pages = {1788--1800}, year = {2019}, url = {https://doi.org/10.1109/TMI.2019.2897538}, doi = {10.1109/TMI.2019.2897538}, timestamp = {Thu, 18 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/BalakrishnanZSG19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ipmi/BahadirDS19, author = {Cagla Deniz Bahadir and Adrian V. Dalca and Mert R. Sabuncu}, editor = {Albert C. S. Chung and James C. Gee and Paul A. Yushkevich and Siqi Bao}, title = {Learning-Based Optimization of the Under-Sampling Pattern in {MRI}}, booktitle = {Information Processing in Medical Imaging - 26th International Conference, {IPMI} 2019, Hong Kong, China, June 2-7, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11492}, pages = {780--792}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-20351-1\_61}, doi = {10.1007/978-3-030-20351-1\_61}, timestamp = {Wed, 22 May 2019 11:15:35 +0200}, biburl = {https://dblp.org/rec/conf/ipmi/BahadirDS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/YuS19, author = {Evan M. Yu and Mert R. Sabuncu}, title = {A Convolutional Autoencoder Approach To Learn Volumetric Shape Representations For Brain Structures}, booktitle = {16th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2019, Venice, Italy, April 8-11, 2019}, pages = {1559--1562}, publisher = {{IEEE}}, year = {2019}, url = {https://doi.org/10.1109/ISBI.2019.8759231}, doi = {10.1109/ISBI.2019.8759231}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/YuS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ZhuGES19, author = {Yingying Zhu and Jodi M. Gilman and Anne Eden Evins and Mert R. Sabuncu}, editor = {Dinggang Shen and Tianming Liu and Terry M. Peters and Lawrence H. Staib and Caroline Essert and Sean Zhou and Pew{-}Thian Yap and Ali R. Khan}, title = {Detecting Cannabis-Associated Cognitive Impairment Using Resting-State fNIRS}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2019 - 22nd International Conference, Shenzhen, China, October 13-17, 2019, Proceedings, Part {V}}, series = {Lecture Notes in Computer Science}, volume = {11768}, pages = {146--154}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-32254-0\_17}, doi = {10.1007/978-3-030-32254-0\_17}, timestamp = {Mon, 19 Feb 2024 14:24:13 +0100}, biburl = {https://dblp.org/rec/conf/miccai/ZhuGES19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/KhoslaJKS19, author = {Meenakshi Khosla and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, editor = {Heung{-}Il Suk and Mingxia Liu and Pingkun Yan and Chunfeng Lian}, title = {Detecting Abnormalities in Resting-State Dynamics: An Unsupervised Learning Approach}, booktitle = {Machine Learning in Medical Imaging - 10th International Workshop, {MLMI} 2019, Held in Conjunction with {MICCAI} 2019, Shenzhen, China, October 13, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11861}, pages = {301--309}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-32692-0\_35}, doi = {10.1007/978-3-030-32692-0\_35}, timestamp = {Tue, 18 Jan 2022 13:58:27 +0100}, biburl = {https://dblp.org/rec/conf/miccai/KhoslaJKS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/DalcaYGFSI19, author = {Adrian V. Dalca and Evan M. Yu and Polina Golland and Bruce Fischl and Mert R. Sabuncu and Juan Eugenio Iglesias}, editor = {Dinggang Shen and Tianming Liu and Terry M. Peters and Lawrence H. Staib and Caroline Essert and Sean Zhou and Pew{-}Thian Yap and Ali R. Khan}, title = {Unsupervised Deep Learning for Bayesian Brain {MRI} Segmentation}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2019 - 22nd International Conference, Shenzhen, China, October 13-17, 2019, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {11766}, pages = {356--365}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-32248-9\_40}, doi = {10.1007/978-3-030-32248-9\_40}, timestamp = {Mon, 19 Feb 2024 14:24:13 +0100}, biburl = {https://dblp.org/rec/conf/miccai/DalcaYGFSI19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ZhangZZKZGSNSW19, author = {Hang Zhang and Jinwei Zhang and Qihao Zhang and Jeremy Kim and Shun Zhang and Susan A. Gauthier and Pascal Spincemaille and Thanh D. Nguyen and Mert R. Sabuncu and Yi Wang}, editor = {Dinggang Shen and Tianming Liu and Terry M. Peters and Lawrence H. Staib and Caroline Essert and Sean Zhou and Pew{-}Thian Yap and Ali R. Khan}, title = {RSANet: Recurrent Slice-Wise Attention Network for Multiple Sclerosis Lesion Segmentation}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2019 - 22nd International Conference, Shenzhen, China, October 13-17, 2019, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {11766}, pages = {411--419}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-32248-9\_46}, doi = {10.1007/978-3-030-32248-9\_46}, timestamp = {Mon, 02 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/ZhangZZKZGSNSW19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/nips/DalcaRGS19, author = {Adrian V. Dalca and Marianne Rakic and John V. Guttag and Mert R. Sabuncu}, editor = {Hanna M. Wallach and Hugo Larochelle and Alina Beygelzimer and Florence d'Alch{\'{e}}{-}Buc and Emily B. Fox and Roman Garnett}, title = {Learning Conditional Deformable Templates with Convolutional Networks}, booktitle = {Advances in Neural Information Processing Systems 32: Annual Conference on Neural Information Processing Systems 2019, NeurIPS 2019, December 8-14, 2019, Vancouver, BC, Canada}, pages = {804--816}, year = {2019}, url = {https://proceedings.neurips.cc/paper/2019/hash/bbcbff5c1f1ded46c25d28119a85c6c2-Abstract.html}, timestamp = {Mon, 16 May 2022 15:41:51 +0200}, biburl = {https://dblp.org/rec/conf/nips/DalcaRGS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1901-01960, author = {Cagla Deniz Bahadir and Adrian V. Dalca and Mert R. Sabuncu}, title = {Learning-based Optimization of the Under-sampling Pattern in {MRI}}, journal = {CoRR}, volume = {abs/1901.01960}, year = {2019}, url = {http://arxiv.org/abs/1901.01960}, eprinttype = {arXiv}, eprint = {1901.01960}, timestamp = {Sun, 03 Feb 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1901-01960.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1903-03148, author = {Adrian V. Dalca and John V. Guttag and Mert R. Sabuncu}, title = {Anatomical Priors in Convolutional Networks for Unsupervised Biomedical Segmentation}, journal = {CoRR}, volume = {abs/1903.03148}, year = {2019}, url = {http://arxiv.org/abs/1903.03148}, eprinttype = {arXiv}, eprint = {1903.03148}, timestamp = {Sun, 31 Mar 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1903-03148.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1903-03503, author = {Adrian V. Dalca and John V. Guttag and Mert R. Sabuncu}, title = {Unsupervised Data Imputation via Variational Inference of Deep Subspaces}, journal = {CoRR}, volume = {abs/1903.03503}, year = {2019}, url = {http://arxiv.org/abs/1903.03503}, eprinttype = {arXiv}, eprint = {1903.03503}, timestamp = {Sun, 31 Mar 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1903-03503.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1903-03545, author = {Adrian V. Dalca and Guha Balakrishnan and John V. Guttag and Mert R. Sabuncu}, title = {Unsupervised Learning of Probabilistic Diffeomorphic Registration for Images and Surfaces}, journal = {CoRR}, volume = {abs/1903.03545}, year = {2019}, url = {http://arxiv.org/abs/1903.03545}, eprinttype = {arXiv}, eprint = {1903.03545}, timestamp = {Sun, 31 Mar 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1903-03545.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1904-11319, author = {Adrian V. Dalca and Evan M. Yu and Polina Golland and Bruce Fischl and Mert R. Sabuncu and Juan Eugenio Iglesias}, title = {Unsupervised deep learning for Bayesian brain {MRI} segmentation}, journal = {CoRR}, volume = {abs/1904.11319}, year = {2019}, url = {http://arxiv.org/abs/1904.11319}, eprinttype = {arXiv}, eprint = {1904.11319}, timestamp = {Fri, 03 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1904-11319.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1906-09551, author = {Zhilu Zhang and Adrian V. Dalca and Mert R. Sabuncu}, title = {Confidence Calibration for Convolutional Neural Networks Using Structured Dropout}, journal = {CoRR}, volume = {abs/1906.09551}, year = {2019}, url = {http://arxiv.org/abs/1906.09551}, eprinttype = {arXiv}, eprint = {1906.09551}, timestamp = {Thu, 27 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1906-09551.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1907-11374, author = {Cagla Deniz Bahadir and Adrian V. Dalca and Mert R. Sabuncu}, title = {Adaptive Compressed Sensing {MRI} with Unsupervised Learning}, journal = {CoRR}, volume = {abs/1907.11374}, year = {2019}, url = {http://arxiv.org/abs/1907.11374}, eprinttype = {arXiv}, eprint = {1907.11374}, timestamp = {Tue, 30 Jul 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1907-11374.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1908-02738, author = {Adrian V. Dalca and Marianne Rakic and John V. Guttag and Mert R. Sabuncu}, title = {Learning Conditional Deformable Templates with Convolutional Networks}, journal = {CoRR}, volume = {abs/1908.02738}, year = {2019}, url = {http://arxiv.org/abs/1908.02738}, eprinttype = {arXiv}, eprint = {1908.02738}, timestamp = {Fri, 09 Aug 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1908-02738.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1908-04466, author = {Hyeon Woo Lee and Mert R. Sabuncu and Adrian V. Dalca}, title = {Few Labeled Atlases are Necessary for Deep-Learning-Based Segmentation}, journal = {CoRR}, volume = {abs/1908.04466}, year = {2019}, url = {http://arxiv.org/abs/1908.04466}, eprinttype = {arXiv}, eprint = {1908.04466}, timestamp = {Mon, 19 Aug 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1908-04466.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1908-06168, author = {Meenakshi Khosla and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, title = {Detecting abnormalities in resting-state dynamics: An unsupervised learning approach}, journal = {CoRR}, volume = {abs/1908.06168}, year = {2019}, url = {http://arxiv.org/abs/1908.06168}, eprinttype = {arXiv}, eprint = {1908.06168}, timestamp = {Mon, 26 Aug 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1908-06168.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cvpr/BalakrishnanZSG18, author = {Guha Balakrishnan and Amy Zhao and Mert R. Sabuncu and John V. Guttag and Adrian V. Dalca}, title = {An Unsupervised Learning Model for Deformable Medical Image Registration}, booktitle = {2018 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2018, Salt Lake City, UT, USA, June 18-22, 2018}, pages = {9252--9260}, publisher = {Computer Vision Foundation / {IEEE} Computer Society}, year = {2018}, url = {http://openaccess.thecvf.com/content\_cvpr\_2018/html/Balakrishnan\_An\_Unsupervised\_Learning\_CVPR\_2018\_paper.html}, doi = {10.1109/CVPR.2018.00964}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cvpr/BalakrishnanZSG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cvpr/DalcaGS18, author = {Adrian V. Dalca and John V. Guttag and Mert R. Sabuncu}, title = {Anatomical Priors in Convolutional Networks for Unsupervised Biomedical Segmentation}, booktitle = {2018 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2018, Salt Lake City, UT, USA, June 18-22, 2018}, pages = {9290--9299}, publisher = {Computer Vision Foundation / {IEEE} Computer Society}, year = {2018}, url = {http://openaccess.thecvf.com/content\_cvpr\_2018/html/Dalca\_Anatomical\_Priors\_in\_CVPR\_2018\_paper.html}, doi = {10.1109/CVPR.2018.00968}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cvpr/DalcaGS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ZhuS18, author = {Yingying Zhu and Mert R. Sabuncu}, editor = {Danail Stoyanov and Zeike Taylor and Enzo Ferrante and Adrian V. Dalca and Anne L. Martel and Lena Maier{-}Hein and Sarah Parisot and Aristeidis Sotiras and Bartlomiej W. Papiez and Mert R. Sabuncu and Li Shen}, title = {A Bayesian Disease Progression Model for Clinical Trajectories}, booktitle = {Graphs in Biomedical Image Analysis - and - Integrating Medical Imaging and Non-Imaging Modalities - Second International Workshop, {GRAIL} 2018 - and - First International Workshop, Beyond {MIC} 2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain, September 20, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11044}, pages = {57--65}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-00689-1\_6}, doi = {10.1007/978-3-030-00689-1\_6}, timestamp = {Thu, 16 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/ZhuS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/KhoslaJKS18, author = {Meenakshi Khosla and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, editor = {Danail Stoyanov and Zeike Taylor and Gustavo Carneiro and Tanveer F. Syeda{-}Mahmood and Anne L. Martel and Lena Maier{-}Hein and Jo{\~{a}}o Manuel R. S. Tavares and Andrew P. Bradley and Jo{\~{a}}o Paulo Papa and Vasileios Belagiannis and Jacinto C. Nascimento and Zhi Lu and Sailesh Conjeti and Mehdi Moradi and Hayit Greenspan and Anant Madabhushi}, title = {3D Convolutional Neural Networks for Classification of Functional Connectomes}, booktitle = {Deep Learning in Medical Image Analysis - and - Multimodal Learning for Clinical Decision Support - 4th International Workshop, {DLMIA} 2018, and 8th International Workshop, {ML-CDS} 2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain, September 20, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11045}, pages = {137--145}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-00889-5\_16}, doi = {10.1007/978-3-030-00889-5\_16}, timestamp = {Tue, 18 Apr 2023 21:52:48 +0200}, biburl = {https://dblp.org/rec/conf/miccai/KhoslaJKS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/DalcaBGS18, author = {Adrian V. Dalca and Guha Balakrishnan and John V. Guttag and Mert R. Sabuncu}, editor = {Alejandro F. Frangi and Julia A. Schnabel and Christos Davatzikos and Carlos Alberola{-}L{\'{o}}pez and Gabor Fichtinger}, title = {Unsupervised Learning for Fast Probabilistic Diffeomorphic Registration}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2018 - 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {11070}, pages = {729--738}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-00928-1\_82}, doi = {10.1007/978-3-030-00928-1\_82}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/DalcaBGS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/nips/ZhangS18, author = {Zhilu Zhang and Mert R. Sabuncu}, editor = {Samy Bengio and Hanna M. Wallach and Hugo Larochelle and Kristen Grauman and Nicol{\`{o}} Cesa{-}Bianchi and Roman Garnett}, title = {Generalized Cross Entropy Loss for Training Deep Neural Networks with Noisy Labels}, booktitle = {Advances in Neural Information Processing Systems 31: Annual Conference on Neural Information Processing Systems 2018, NeurIPS 2018, December 3-8, 2018, Montr{\'{e}}al, Canada}, pages = {8792--8802}, year = {2018}, url = {https://proceedings.neurips.cc/paper/2018/hash/f2925f97bc13ad2852a7a551802feea0-Abstract.html}, timestamp = {Mon, 16 May 2022 15:41:51 +0200}, biburl = {https://dblp.org/rec/conf/nips/ZhangS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/prni/HeKHSEBFY18, author = {Tong He and Ru Kong and Avram J. Holmes and Mert R. Sabuncu and Simon B. Eickhoff and Danilo Bzdok and Jiashi Feng and B. T. Thomas Yeo}, title = {Is deep learning better than kernel regression for functional connectivity prediction of fluid intelligence?}, booktitle = {2018 International Workshop on Pattern Recognition in Neuroimaging, {PRNI} 2018, Singapore, Singapore, June 12-14, 2018}, pages = {1--4}, publisher = {{IEEE}}, year = {2018}, url = {https://doi.org/10.1109/PRNI.2018.8423958}, doi = {10.1109/PRNI.2018.8423958}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/prni/HeKHSEBFY18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/miccai/2018grail, editor = {Danail Stoyanov and Zeike Taylor and Enzo Ferrante and Adrian V. Dalca and Anne L. Martel and Lena Maier{-}Hein and Sarah Parisot and Aristeidis Sotiras and Bartlomiej W. Papiez and Mert R. Sabuncu and Li Shen}, title = {Graphs in Biomedical Image Analysis - and - Integrating Medical Imaging and Non-Imaging Modalities - Second International Workshop, {GRAIL} 2018 - and - First International Workshop, Beyond {MIC} 2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain, September 20, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11044}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-00689-1}, doi = {10.1007/978-3-030-00689-1}, isbn = {978-3-030-00688-4}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/2018grail.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1801-00880, author = {Mohammad Haft{-}Javaherian and Linjing Fang and Victorine P. Muse and Chris B. Schaffer and Nozomi Nishimura and Mert R. Sabuncu}, title = {Deep convolutional neural networks for segmenting 3D in vivo multiphoton images of vasculature in Alzheimer disease mouse models}, journal = {CoRR}, volume = {abs/1801.00880}, year = {2018}, url = {http://arxiv.org/abs/1801.00880}, eprinttype = {arXiv}, eprint = {1801.00880}, timestamp = {Sun, 17 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1801-00880.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1802-02604, author = {Guha Balakrishnan and Amy Zhao and Mert R. Sabuncu and John V. Guttag and Adrian V. Dalca}, title = {An Unsupervised Learning Model for Deformable Medical Image Registration}, journal = {CoRR}, volume = {abs/1802.02604}, year = {2018}, url = {http://arxiv.org/abs/1802.02604}, eprinttype = {arXiv}, eprint = {1802.02604}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1802-02604.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1803-05011, author = {Yingying Zhu and Mert R. Sabuncu}, title = {A Probabilistic Disease Progression Model for Predicting Future Clinical Outcome}, journal = {CoRR}, volume = {abs/1803.05011}, year = {2018}, url = {http://arxiv.org/abs/1803.05011}, eprinttype = {arXiv}, eprint = {1803.05011}, timestamp = {Thu, 16 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1803-05011.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1805-04605, author = {Adrian V. Dalca and Guha Balakrishnan and John V. Guttag and Mert R. Sabuncu}, title = {Unsupervised Learning for Fast Probabilistic Diffeomorphic Registration}, journal = {CoRR}, volume = {abs/1805.04605}, year = {2018}, url = {http://arxiv.org/abs/1805.04605}, eprinttype = {arXiv}, eprint = {1805.04605}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1805-04605.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1805-07836, author = {Zhilu Zhang and Mert R. Sabuncu}, title = {Generalized Cross Entropy Loss for Training Deep Neural Networks with Noisy Labels}, journal = {CoRR}, volume = {abs/1805.07836}, year = {2018}, url = {http://arxiv.org/abs/1805.07836}, eprinttype = {arXiv}, eprint = {1805.07836}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1805-07836.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1806-04209, author = {Meenakshi Khosla and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, title = {3D Convolutional Neural Networks for Classification of Functional Connectomes}, journal = {CoRR}, volume = {abs/1806.04209}, year = {2018}, url = {http://arxiv.org/abs/1806.04209}, eprinttype = {arXiv}, eprint = {1806.04209}, timestamp = {Tue, 18 Sep 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1806-04209.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1808-05732, author = {Adrian V. Dalca and Katherine L. Bouman and William T. Freeman and Natalia S. Rost and Mert R. Sabuncu and Polina Golland}, title = {Medical Image Imputation from Image Collections}, journal = {CoRR}, volume = {abs/1808.05732}, year = {2018}, url = {http://arxiv.org/abs/1808.05732}, eprinttype = {arXiv}, eprint = {1808.05732}, timestamp = {Sun, 02 Sep 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1808-05732.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1809-05231, author = {Guha Balakrishnan and Amy Zhao and Mert R. Sabuncu and John V. Guttag and Adrian V. Dalca}, title = {VoxelMorph: {A} Learning Framework for Deformable Medical Image Registration}, journal = {CoRR}, volume = {abs/1809.05231}, year = {2018}, url = {http://arxiv.org/abs/1809.05231}, eprinttype = {arXiv}, eprint = {1809.05231}, timestamp = {Fri, 05 Oct 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1809-05231.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1809-06219, author = {Meenakshi Khosla and Keith Jamison and Amy Kuceyeski and Mert R. Sabuncu}, title = {Ensemble learning with 3D convolutional neural networks for connectome-based prediction}, journal = {CoRR}, volume = {abs/1809.06219}, year = {2018}, url = {http://arxiv.org/abs/1809.06219}, eprinttype = {arXiv}, eprint = {1809.06219}, timestamp = {Fri, 05 Oct 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1809-06219.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1810-07746, author = {Evan M. Yu and Mert R. Sabuncu}, title = {A Convolutional Autoencoder Approach to Learn Volumetric Shape Representations for Brain Structures}, journal = {CoRR}, volume = {abs/1810.07746}, year = {2018}, url = {http://arxiv.org/abs/1810.07746}, eprinttype = {arXiv}, eprint = {1810.07746}, timestamp = {Tue, 30 Oct 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1810-07746.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1812-11477, author = {Meenakshi Khosla and Keith Jamison and Gia H. Ngo and Amy Kuceyeski and Mert R. Sabuncu}, title = {Machine learning in resting-state fMRI analysis}, journal = {CoRR}, volume = {abs/1812.11477}, year = {2018}, url = {http://arxiv.org/abs/1812.11477}, eprinttype = {arXiv}, eprint = {1812.11477}, timestamp = {Wed, 02 Jan 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1812-11477.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cars/OurselinSWJUM17, author = {S{\'{e}}bastien Ourselin and Mert R. Sabuncu and William M. Wells III and Leo Joskowicz and G{\"{o}}zde B. {\"{U}}nal and Andreas K. Maier}, title = {Guest editorial of the {IJCARS} {MICCAI} 2016 special issue}, journal = {Int. J. Comput. Assist. Radiol. Surg.}, volume = {12}, number = {8}, pages = {1243--1244}, year = {2017}, url = {https://doi.org/10.1007/s11548-017-1642-1}, doi = {10.1007/S11548-017-1642-1}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cars/OurselinSWJUM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/OurselinSWJUM17, author = {S{\'{e}}bastien Ourselin and Mert R. Sabuncu and William M. Wells III and Leo Joskowicz and G{\"{o}}zde B. {\"{U}}nal and Andreas K. Maier}, title = {The 19th International Conference on Medical Image Computing and Computer-Assisted Intervention {(MICCAI} 2016)}, journal = {Medical Image Anal.}, volume = {41}, pages = {1}, year = {2017}, url = {https://doi.org/10.1016/j.media.2017.06.012}, doi = {10.1016/J.MEDIA.2017.06.012}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/mia/OurselinSWJUM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/AganjI0SF17, author = {Iman Aganj and Juan Eugenio Iglesias and Martin Reuter and Mert Rory Sabuncu and Bruce Fischl}, title = {Mid-space-independent deformable image registration}, journal = {NeuroImage}, volume = {152}, pages = {158--170}, year = {2017}, url = {https://doi.org/10.1016/j.neuroimage.2017.02.055}, doi = {10.1016/J.NEUROIMAGE.2017.02.055}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/AganjI0SF17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/NenningLGSSL17, author = {Karl{-}Heinz Nenning and Hesheng Liu and Satrajit S. Ghosh and Mert R. Sabuncu and Ernst Schwartz and Georg Langs}, title = {Diffeomorphic functional brain surface alignment: Functional demons}, journal = {NeuroImage}, volume = {156}, pages = {456--465}, year = {2017}, url = {https://doi.org/10.1016/j.neuroimage.2017.04.028}, doi = {10.1016/J.NEUROIMAGE.2017.04.028}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/NenningLGSSL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ipmi/DalcaBFRSG17, author = {Adrian V. Dalca and Katherine L. Bouman and William T. Freeman and Natalia S. Rost and Mert R. Sabuncu and Polina Golland}, editor = {Marc Niethammer and Martin Styner and Stephen R. Aylward and Hongtu Zhu and Ipek Oguz and Pew{-}Thian Yap and Dinggang Shen}, title = {Population Based Image Imputation}, booktitle = {Information Processing in Medical Imaging - 25th International Conference, {IPMI} 2017, Boone, NC, USA, June 25-30, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10265}, pages = {659--671}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-59050-9\_52}, doi = {10.1007/978-3-319-59050-9\_52}, timestamp = {Tue, 14 May 2019 10:00:52 +0200}, biburl = {https://dblp.org/rec/conf/ipmi/DalcaBFRSG17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/miccai/2017grail, editor = {M. Jorge Cardoso and Tal Arbel and Enzo Ferrante and Xavier Pennec and Adrian V. Dalca and Sarah Parisot and Sarang C. Joshi and Nematollah Kayhan Batmanghelich and Aristeidis Sotiras and Mads Nielsen and Mert R. Sabuncu and Tom Fletcher and Li Shen and Stanley Durrleman and Stefan Sommer}, title = {Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics - First International Workshop, {GRAIL} 2017, 6th International Workshop, {MFCA} 2017, and Third International Workshop, MICGen 2017, Held in Conjunction with {MICCAI} 2017, Qu{\'{e}}bec City, QC, Canada, September 10-14, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10551}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67675-3}, doi = {10.1007/978-3-319-67675-3}, isbn = {978-3-319-67674-6}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/2017grail.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/miccai/2016-1, editor = {S{\'{e}}bastien Ourselin and Leo Joskowicz and Mert R. Sabuncu and G{\"{o}}zde B. {\"{U}}nal and William M. Wells III}, title = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {9900}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-46720-7}, doi = {10.1007/978-3-319-46720-7}, isbn = {978-3-319-46719-1}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/2016-1.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/miccai/2016-2, editor = {S{\'{e}}bastien Ourselin and Leo Joskowicz and Mert R. Sabuncu and G{\"{o}}zde B. {\"{U}}nal and William M. Wells III}, title = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {9901}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-46723-8}, doi = {10.1007/978-3-319-46723-8}, isbn = {978-3-319-46722-1}, timestamp = {Fri, 08 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/2016-2.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/miccai/2016-3, editor = {S{\'{e}}bastien Ourselin and Leo Joskowicz and Mert R. Sabuncu and G{\"{o}}zde B. {\"{U}}nal and William M. Wells III}, title = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {9902}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-46726-9}, doi = {10.1007/978-3-319-46726-9}, isbn = {978-3-319-46725-2}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/2016-3.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/IglesiasS15, author = {Juan Eugenio Iglesias and Mert R. Sabuncu}, title = {Multi-atlas segmentation of biomedical images: {A} survey}, journal = {Medical Image Anal.}, volume = {24}, number = {1}, pages = {205--219}, year = {2015}, url = {https://doi.org/10.1016/j.media.2015.06.012}, doi = {10.1016/J.MEDIA.2015.06.012}, timestamp = {Mon, 24 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/mia/IglesiasS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/AganjRSF15, author = {Iman Aganj and Martin Reuter and Mert R. Sabuncu and Bruce Fischl}, title = {Avoiding symmetry-breaking spatial non-uniformity in deformable image registration via a quasi-volume-preserving constraint}, journal = {NeuroImage}, volume = {106}, pages = {238--251}, year = {2015}, url = {https://doi.org/10.1016/j.neuroimage.2014.10.059}, doi = {10.1016/J.NEUROIMAGE.2014.10.059}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/AganjRSF15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/IglesiasSABCSBF15, author = {Juan Eugenio Iglesias and Mert Rory Sabuncu and Iman Aganj and Priyanka Bhatt and Christen Casillas and David H. Salat and Adam L. Boxer and Bruce Fischl and Koen Van Leemput}, title = {An algorithm for optimal fusion of atlases with different labeling protocols}, journal = {NeuroImage}, volume = {106}, pages = {451--463}, year = {2015}, url = {https://doi.org/10.1016/j.neuroimage.2014.11.031}, doi = {10.1016/J.NEUROIMAGE.2014.11.031}, timestamp = {Tue, 04 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/IglesiasSABCSBF15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/SabuncuBRGF15, author = {Mert R. Sabuncu and Jorge L. Bernal{-}Rusiel and Martin Reuter and Douglas N. Greve and Bruce Fischl}, title = {Corrigendum to "Event time analysis of longitudinal neuroimage data" [NeuroImage 97 {(15} August 2014) 9-18]}, journal = {NeuroImage}, volume = {108}, pages = {74}, year = {2015}, url = {https://doi.org/10.1016/j.neuroimage.2014.12.051}, doi = {10.1016/J.NEUROIMAGE.2014.12.051}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/SabuncuBRGF15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/Bernal-RusielGR15, author = {Jorge L. Bernal{-}Rusiel and Douglas N. Greve and Martin Reuter and Bruce Fischl and Mert R. Sabuncu}, title = {Corrigendum to "Statistical analysis of longitudinal neuroimage data with Linear Mixed Effects models" [NeuroImage 66 {(1} February 2013) 249-260]}, journal = {NeuroImage}, volume = {108}, pages = {110}, year = {2015}, url = {https://doi.org/10.1016/j.neuroimage.2014.12.053}, doi = {10.1016/J.NEUROIMAGE.2014.12.053}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/Bernal-RusielGR15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/Bernal-RusielRG15, author = {Jorge L. Bernal{-}Rusiel and Martin Reuter and Douglas N. Greve and Bruce Fischl and Mert R. Sabuncu}, title = {Corrigendum to "Spatiotemporal linear mixed effects modeling for the mass-univariate analysis of longitudinal neuroimage data" [NeuroImage 81 {(1} November 2013) 358-370]}, journal = {NeuroImage}, volume = {108}, pages = {123}, year = {2015}, url = {https://doi.org/10.1016/j.neuroimage.2014.12.052}, doi = {10.1016/J.NEUROIMAGE.2014.12.052}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/Bernal-RusielRG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/GeNGMSS15, author = {Tian Ge and Thomas E. Nichols and Debashis Ghosh and Elizabeth C. Mormino and Jordan W. Smoller and Mert R. Sabuncu}, title = {A kernel machine method for detecting effects of interaction between multidimensional variable sets: An imaging genetics application}, journal = {NeuroImage}, volume = {109}, pages = {505--514}, year = {2015}, url = {https://doi.org/10.1016/j.neuroimage.2015.01.029}, doi = {10.1016/J.NEUROIMAGE.2015.01.029}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/GeNGMSS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ni/SabuncuK15, author = {Mert R. Sabuncu and Ender Konukoglu}, title = {Clinical Prediction from Structural Brain {MRI} Scans: {A} Large-Scale Empirical Study}, journal = {Neuroinformatics}, volume = {13}, number = {1}, pages = {31--46}, year = {2015}, url = {https://doi.org/10.1007/s12021-014-9238-1}, doi = {10.1007/S12021-014-9238-1}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ni/SabuncuK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/AganjIRSF15, author = {Iman Aganj and Juan Eugenio Iglesias and Martin Reuter and Mert R. Sabuncu and Bruce Fischl}, editor = {Nassir Navab and Joachim Hornegger and William M. Wells III and Alejandro F. Frangi}, title = {Mid-Space-Independent Symmetric Data Term for Pairwise Deformable Image Registration}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2015 - 18th International Conference Munich, Germany, October 5-9, 2015, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {9350}, pages = {263--271}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-24571-3\_32}, doi = {10.1007/978-3-319-24571-3\_32}, timestamp = {Mon, 03 Jan 2022 22:36:38 +0100}, biburl = {https://dblp.org/rec/conf/miccai/AganjIRSF15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/Sabuncu15, author = {Mert R. Sabuncu}, editor = {Nassir Navab and Joachim Hornegger and William M. Wells III and Alejandro F. Frangi}, title = {A Sparse Bayesian Learning Algorithm for Longitudinal Image Data}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2015 - 18th International Conference Munich, Germany, October 5 - 9, 2015, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {9351}, pages = {411--418}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-24574-4\_49}, doi = {10.1007/978-3-319-24574-4\_49}, timestamp = {Mon, 03 Jan 2022 22:36:27 +0100}, biburl = {https://dblp.org/rec/conf/miccai/Sabuncu15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/DalcaSSG15, author = {Adrian V. Dalca and Ramesh Sridharan and Mert R. Sabuncu and Polina Golland}, editor = {Nassir Navab and Joachim Hornegger and William M. Wells III and Alejandro F. Frangi}, title = {Predictive Modeling of Anatomy with Genetic and Clinical Data}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2015 - 18th International Conference Munich, Germany, October 5 - 9, 2015, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {9351}, pages = {519--526}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-24574-4\_62}, doi = {10.1007/978-3-319-24574-4\_62}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/DalcaSSG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/SabuncuBRGF14, author = {Mert R. Sabuncu and Jorge L. Bernal{-}Rusiel and Martin Reuter and Douglas N. Greve and Bruce Fischl}, title = {Event time analysis of longitudinal neuroimage data}, journal = {NeuroImage}, volume = {97}, pages = {9--18}, year = {2014}, url = {https://doi.org/10.1016/j.neuroimage.2014.04.015}, doi = {10.1016/J.NEUROIMAGE.2014.04.015}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/SabuncuBRGF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/Sabuncu14, author = {Mert R. Sabuncu}, editor = {Polina Golland and Nobuhiko Hata and Christian Barillot and Joachim Hornegger and Robert D. Howe}, title = {A Universal and Efficient Method to Compute Maps from Image-Based Prediction Models}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2014 - 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {8675}, pages = {353--360}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-10443-0\_45}, doi = {10.1007/978-3-319-10443-0\_45}, timestamp = {Tue, 01 Jun 2021 15:22:56 +0200}, biburl = {https://dblp.org/rec/conf/miccai/Sabuncu14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/LeemputS14, author = {Koenraad Van Leemput and Mert R. Sabuncu}, editor = {Polina Golland and Nobuhiko Hata and Christian Barillot and Joachim Hornegger and Robert D. Howe}, title = {A Cautionary Analysis of {STAPLE} Using Direct Inference of Segmentation Truth}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2014 - 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {8673}, pages = {398--406}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-10404-1\_50}, doi = {10.1007/978-3-319-10404-1\_50}, timestamp = {Thu, 31 Oct 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/LeemputS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/DalcaSCFKFRWSRG14, author = {Adrian Vasile Dalca and Ramesh Sridharan and Lisa Cloonan and Kaitlin M. Fitzpatrick and Allison Kanakis and Karen L. Furie and Jonathan Rosand and Ona Wu and Mert R. Sabuncu and Natalia S. Rost and Polina Golland}, editor = {Polina Golland and Nobuhiko Hata and Christian Barillot and Joachim Hornegger and Robert D. Howe}, title = {Segmentation of Cerebrovascular Pathologies in Stroke Patients with Spatial and Shape Priors}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2014 - 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {8674}, pages = {773--780}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-10470-6\_96}, doi = {10.1007/978-3-319-10470-6\_96}, timestamp = {Thu, 31 Oct 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/DalcaSCFKFRWSRG14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/IglesiasS14, author = {Juan Eugenio Iglesias and Mert Rory Sabuncu}, title = {Multi-Atlas Segmentation of Biomedical Images: {A} Survey}, journal = {CoRR}, volume = {abs/1412.3421}, year = {2014}, url = {http://arxiv.org/abs/1412.3421}, eprinttype = {arXiv}, eprint = {1412.3421}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/IglesiasS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jocn/GreveHCSSFB13, author = {Douglas N. Greve and Lise Van der Haegen and Qing Cai and Steven M. Stufflebeam and Mert R. Sabuncu and Bruce Fischl and Marc Brysbaert}, title = {A Surface-based Analysis of Language Lateralization and Cortical Asymmetry}, journal = {J. Cogn. Neurosci.}, volume = {25}, number = {9}, pages = {1477--1492}, year = {2013}, url = {https://doi.org/10.1162/jocn\_a\_00405}, doi = {10.1162/JOCN\_A\_00405}, timestamp = {Thu, 18 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jocn/GreveHCSSFB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/IglesiasSL13, author = {Juan Eugenio Iglesias and Mert R. Sabuncu and Koen Van Leemput}, title = {Improved inference in Bayesian segmentation using Monte Carlo sampling: Application to hippocampal subfield volumetry}, journal = {Medical Image Anal.}, volume = {17}, number = {7}, pages = {766--778}, year = {2013}, url = {https://doi.org/10.1016/j.media.2013.04.005}, doi = {10.1016/J.MEDIA.2013.04.005}, timestamp = {Mon, 24 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/mia/IglesiasSL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/IglesiasSL13a, author = {Juan Eugenio Iglesias and Mert Rory Sabuncu and Koen Van Leemput}, title = {A unified framework for cross-modality multi-atlas segmentation of brain {MRI}}, journal = {Medical Image Anal.}, volume = {17}, number = {8}, pages = {1181--1191}, year = {2013}, url = {https://doi.org/10.1016/j.media.2013.08.001}, doi = {10.1016/J.MEDIA.2013.08.001}, timestamp = {Mon, 24 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/mia/IglesiasSL13a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/Bernal-RusielGRFS13, author = {Jorge L. Bernal{-}Rusiel and Douglas N. Greve and Martin Reuter and Bruce Fischl and Mert R. Sabuncu}, title = {Statistical analysis of longitudinal neuroimage data with Linear Mixed Effects models}, journal = {NeuroImage}, volume = {66}, pages = {249--260}, year = {2013}, url = {https://doi.org/10.1016/j.neuroimage.2012.10.065}, doi = {10.1016/J.NEUROIMAGE.2012.10.065}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/Bernal-RusielGRFS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/Bernal-RusielRGFS13, author = {Jorge L. Bernal{-}Rusiel and Martin Reuter and Douglas N. Greve and Bruce Fischl and Mert R. Sabuncu}, title = {Spatiotemporal linear mixed effects modeling for the mass-univariate analysis of longitudinal neuroimage data}, journal = {NeuroImage}, volume = {81}, pages = {358--370}, year = {2013}, url = {https://doi.org/10.1016/j.neuroimage.2013.05.049}, doi = {10.1016/J.NEUROIMAGE.2013.05.049}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/Bernal-RusielRGFS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tip/AganjYSF13, author = {Iman Aganj and B. T. Thomas Yeo and Mert R. Sabuncu and Bruce Fischl}, title = {On Removing Interpolation and Resampling Artifacts in Rigid Image Registration}, journal = {{IEEE} Trans. Image Process.}, volume = {22}, number = {2}, pages = {816--827}, year = {2013}, url = {https://doi.org/10.1109/TIP.2012.2224356}, doi = {10.1109/TIP.2012.2224356}, timestamp = {Sun, 10 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tip/AganjYSF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ipmi/BatmanghelichDSG13, author = {Nematollah Batmanghelich and Adrian V. Dalca and Mert R. Sabuncu and Polina Golland}, editor = {James C. Gee and Sarang C. Joshi and Kilian M. Pohl and William M. Wells III and Lilla Z{\"{o}}llei}, title = {Joint Modeling of Imaging and Genetics}, booktitle = {Information Processing in Medical Imaging - 23rd International Conference, {IPMI} 2013, Asilomar, CA, USA, June 28-July 3, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7917}, pages = {766--777}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-38868-2\_64}, doi = {10.1007/978-3-642-38868-2\_64}, timestamp = {Tue, 14 May 2019 10:00:52 +0200}, biburl = {https://dblp.org/rec/conf/ipmi/BatmanghelichDSG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/AganjRSF13, author = {Iman Aganj and Martin Reuter and Mert R. Sabuncu and Bruce Fischl}, title = {Symmetric non-rigid image registration via an adaptive quasi-volume-preserving constraint}, booktitle = {10th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2013, 7-11 April, 2013, San Francisco, CA, USA, Proceedings}, pages = {230--233}, publisher = {{IEEE}}, year = {2013}, url = {https://doi.org/10.1109/ISBI.2013.6556454}, doi = {10.1109/ISBI.2013.6556454}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/AganjRSF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/Sabuncu13, author = {Mert R. Sabuncu}, editor = {Guorong Wu and Daoqiang Zhang and Dinggang Shen and Pingkun Yan and Kenji Suzuki and Fei Wang}, title = {A Bayesian Algorithm for Image-Based Time-to-Event Prediction}, booktitle = {Machine Learning in Medical Imaging - 4th International Workshop, {MLMI} 2013, Held in Conjunction with {MICCAI} 2013, Nagoya, Japan, September 22, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8184}, pages = {74--81}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-319-02267-3\_10}, doi = {10.1007/978-3-319-02267-3\_10}, timestamp = {Sat, 05 Sep 2020 18:06:04 +0200}, biburl = {https://dblp.org/rec/conf/miccai/Sabuncu13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/KonukogluKSF13, author = {Ender Konukoglu and Andr{\'{e}} J. W. van der Kouwe and Mert Rory Sabuncu and Bruce Fischl}, editor = {Kensaku Mori and Ichiro Sakuma and Yoshinobu Sato and Christian Barillot and Nassir Navab}, title = {Example-Based Restoration of High-Resolution Magnetic Resonance Image Acquisitions}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2013 - 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {8149}, pages = {131--138}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40811-3\_17}, doi = {10.1007/978-3-642-40811-3\_17}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/KonukogluKSF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/GanzSL13, author = {Melanie Ganz and Mert R. Sabuncu and Koen Van Leemput}, editor = {Guorong Wu and Daoqiang Zhang and Dinggang Shen and Pingkun Yan and Kenji Suzuki and Fei Wang}, title = {An Improved Optimization Method for the Relevance Voxel Machine}, booktitle = {Machine Learning in Medical Imaging - 4th International Workshop, {MLMI} 2013, Held in Conjunction with {MICCAI} 2013, Nagoya, Japan, September 22, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8184}, pages = {147--154}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-319-02267-3\_19}, doi = {10.1007/978-3-319-02267-3\_19}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/GanzSL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/KonukogluGLS13, author = {Ender Konukoglu and Melanie Ganz and Koen Van Leemput and Mert R. Sabuncu}, editor = {Guorong Wu and Daoqiang Zhang and Dinggang Shen and Pingkun Yan and Kenji Suzuki and Fei Wang}, title = {On Feature Relevance in Image-Based Prediction Models: An Empirical Study}, booktitle = {Machine Learning in Medical Imaging - 4th International Workshop, {MLMI} 2013, Held in Conjunction with {MICCAI} 2013, Nagoya, Japan, September 22, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8184}, pages = {171--178}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-319-02267-3\_22}, doi = {10.1007/978-3-319-02267-3\_22}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/KonukogluGLS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/IglesiasSL13, author = {Juan Eugenio Iglesias and Mert R. Sabuncu and Koen Van Leemput}, editor = {Kensaku Mori and Ichiro Sakuma and Yoshinobu Sato and Christian Barillot and Nassir Navab}, title = {A Probabilistic, Non-parametric Framework for Inter-modality Label Fusion}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2013 - 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {8151}, pages = {576--583}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40760-4\_72}, doi = {10.1007/978-3-642-40760-4\_72}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/IglesiasSL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/DijkSB12, author = {Koene R. A. Van Dijk and Mert R. Sabuncu and Randy L. Buckner}, title = {The influence of head motion on intrinsic functional connectivity {MRI}}, journal = {NeuroImage}, volume = {59}, number = {1}, pages = {431--438}, year = {2012}, url = {https://doi.org/10.1016/j.neuroimage.2011.07.044}, doi = {10.1016/J.NEUROIMAGE.2011.07.044}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/DijkSB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/WinklerSYFGKNBG12, author = {Anderson M. Winkler and Mert R. Sabuncu and B. T. Thomas Yeo and Bruce Fischl and Douglas N. Greve and Peter V. Kochunov and Thomas E. Nichols and John Blangero and David C. Glahn}, title = {Measuring and comparing brain cortical surface area and other areal quantities}, journal = {NeuroImage}, volume = {61}, number = {4}, pages = {1428--1443}, year = {2012}, url = {https://doi.org/10.1016/j.neuroimage.2012.03.026}, doi = {10.1016/J.NEUROIMAGE.2012.03.026}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/WinklerSYFGKNBG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/SabuncuL12, author = {Mert R. Sabuncu and Koen Van Leemput}, title = {The Relevance Voxel Machine (RVoxM): {A} Self-Tuning Bayesian Model for Informative Image-Based Prediction}, journal = {{IEEE} Trans. Medical Imaging}, volume = {31}, number = {12}, pages = {2290--2306}, year = {2012}, url = {https://doi.org/10.1109/TMI.2012.2216543}, doi = {10.1109/TMI.2012.2216543}, timestamp = {Thu, 18 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/SabuncuL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/IglesiasSL12, author = {Juan Eugenio Iglesias and Mert R. Sabuncu and Koen Van Leemput}, title = {A generative model for multi-atlas segmentation across modalities}, booktitle = {9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings}, pages = {888--891}, publisher = {{IEEE}}, year = {2012}, url = {https://doi.org/10.1109/ISBI.2012.6235691}, doi = {10.1109/ISBI.2012.6235691}, timestamp = {Wed, 16 Oct 2019 14:14:52 +0200}, biburl = {https://dblp.org/rec/conf/isbi/IglesiasSL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/IglesiasSL12a, author = {Juan Eugenio Iglesias and Mert R. Sabuncu and Koen Van Leemput}, editor = {Nicholas Ayache and Herv{\'{e}} Delingette and Polina Golland and Kensaku Mori}, title = {Incorporating Parameter Uncertainty in Bayesian Segmentation Models: Application to Hippocampal Subfield Volumetry}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2012 - 15th International Conference, Nice, France, October 1-5, 2012, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {7512}, pages = {50--57}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33454-2\_7}, doi = {10.1007/978-3-642-33454-2\_7}, timestamp = {Tue, 14 May 2019 10:00:49 +0200}, biburl = {https://dblp.org/rec/conf/miccai/IglesiasSL12a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/IglesiasSL12, author = {Juan Eugenio Iglesias and Mert R. Sabuncu and Koen Van Leemput}, editor = {Pew{-}Thian Yap and Tianming Liu and Dinggang Shen and Carl{-}Fredrik Westin and Li Shen}, title = {A Generative Model for Probabilistic Label Fusion of Multimodal Data}, booktitle = {Multimodal Brain Image Analysis - Second International Workshop, {MBIA} 2012, Held in Conjunction with {MICCAI} 2012, Nice, France, October 1-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7509}, pages = {115--133}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33530-3\_10}, doi = {10.1007/978-3-642-33530-3\_10}, timestamp = {Mon, 19 Feb 2024 14:24:13 +0100}, biburl = {https://dblp.org/rec/conf/miccai/IglesiasSL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icassp/GollandS11, author = {Polina Golland and Mert R. Sabuncu}, title = {Modeling anatomical heterogeneity in populations}, booktitle = {Proceedings of the {IEEE} International Conference on Acoustics, Speech, and Signal Processing, {ICASSP} 2011, May 22-27, 2011, Prague Congress Center, Prague, Czech Republic}, pages = {5776--5779}, publisher = {{IEEE}}, year = {2011}, url = {https://doi.org/10.1109/ICASSP.2011.5947673}, doi = {10.1109/ICASSP.2011.5947673}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icassp/GollandS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/SabuncuL11, author = {Mert R. Sabuncu and Koen Van Leemput}, editor = {Gabor Fichtinger and Anne L. Martel and Terry M. Peters}, title = {The Relevance Voxel Machine (RVoxM): {A} Bayesian Method for Image-Based Prediction}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2011 - 14th International Conference, Toronto, Canada, September 18-22, 2011, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {6893}, pages = {99--106}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23626-6\_13}, doi = {10.1007/978-3-642-23626-6\_13}, timestamp = {Tue, 14 May 2019 10:00:50 +0200}, biburl = {https://dblp.org/rec/conf/miccai/SabuncuL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/YeoSVAFG10, author = {B. T. Thomas Yeo and Mert R. Sabuncu and Tom Vercauteren and Nicholas Ayache and Bruce Fischl and Polina Golland}, title = {Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration}, journal = {{IEEE} Trans. Medical Imaging}, volume = {29}, number = {3}, pages = {650--668}, year = {2010}, url = {https://doi.org/10.1109/TMI.2009.2030797}, doi = {10.1109/TMI.2009.2030797}, timestamp = {Thu, 18 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/YeoSVAFG10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/YeoSVHAZGF10, author = {B. T. Thomas Yeo and Mert R. Sabuncu and Tom Vercauteren and Daphne J. Holt and Katrin Amunts and Karl Zilles and Polina Golland and Bruce Fischl}, title = {Learning Task-Optimal Registration Cost Functions for Localizing Cytoarchitecture and Function in the Cerebral Cortex}, journal = {{IEEE} Trans. Medical Imaging}, volume = {29}, number = {7}, pages = {1424--1441}, year = {2010}, url = {https://doi.org/10.1109/TMI.2010.2049497}, doi = {10.1109/TMI.2010.2049497}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/YeoSVHAZGF10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/SabuncuYLFG10, author = {Mert R. Sabuncu and B. T. Thomas Yeo and Koenraad Van Leemput and Bruce Fischl and Polina Golland}, title = {A Generative Model for Image Segmentation Based on Label Fusion}, journal = {{IEEE} Trans. Medical Imaging}, volume = {29}, number = {10}, pages = {1714--1729}, year = {2010}, url = {https://doi.org/10.1109/TMI.2010.2050897}, doi = {10.1109/TMI.2010.2050897}, timestamp = {Thu, 18 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/SabuncuYLFG10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/DepaSHNSG10, author = {Michal Depa and Mert R. Sabuncu and Godtfred Holmvang and Reza Nezafat and Ehud J. Schmidt and Polina Golland}, editor = {Oscar Camara and Mihaela Pop and Kawal S. Rhode and Maxime Sermesant and Nic Smith and Alistair A. Young}, title = {Robust Atlas-Based Segmentation of Highly Variable Anatomy: Left Atrium Segmentation}, booktitle = {Statistical Atlases and Computational Models of the Heart, First International Workshop, {STACOM} 2010, and Cardiac Electrophysiological Simulation Challenge, {CESC} 2010, Held in Conjunction with {MICCAI} 2010, Beijing, China, September 20, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6364}, pages = {85--94}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15835-3\_9}, doi = {10.1007/978-3-642-15835-3\_9}, timestamp = {Thu, 16 Mar 2023 20:00:44 +0100}, biburl = {https://dblp.org/rec/conf/miccai/DepaSHNSG10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijcv/ZiyanSGW09, author = {Ulas Ziyan and Mert R. Sabuncu and W. Eric L. Grimson and Carl{-}Fredrik Westin}, title = {Consistency Clustering: {A} Robust Algorithm for Group-wise Registration, Segmentation and Automatic Atlas Construction in Diffusion {MRI}}, journal = {Int. J. Comput. Vis.}, volume = {85}, number = {3}, pages = {279--290}, year = {2009}, url = {https://doi.org/10.1007/s11263-009-0217-1}, doi = {10.1007/S11263-009-0217-1}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijcv/ZiyanSGW09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/SabuncuBSG09, author = {Mert R. Sabuncu and Serdar K. Balci and Martha Elizabeth Shenton and Polina Golland}, title = {Image-Driven Population Analysis Through Mixture Modeling}, journal = {{IEEE} Trans. Medical Imaging}, volume = {28}, number = {9}, pages = {1473--1487}, year = {2009}, url = {https://doi.org/10.1109/TMI.2009.2017942}, doi = {10.1109/TMI.2009.2017942}, timestamp = {Thu, 18 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/SabuncuBSG09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ipmi/PohlS09, author = {Kilian M. Pohl and Mert R. Sabuncu}, editor = {Jerry L. Prince and Dzung L. Pham and Kyle J. Myers}, title = {A Unified Framework for {MR} Based Disease Classification}, booktitle = {Information Processing in Medical Imaging, 21st International Conference, {IPMI} 2009, Williamsburg, VA, USA, July 5-10, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5636}, pages = {300--313}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-02498-6\_25}, doi = {10.1007/978-3-642-02498-6\_25}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ipmi/PohlS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/Sabuncu09, author = {Mert R. Sabuncu}, title = {Image-Driven Population Analysis Through Mixture Modeling}, booktitle = {Proceedings of the 2009 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009}, pages = {825--825}, publisher = {{IEEE}}, year = {2009}, url = {https://doi.org/10.1109/ISBI.2009.5193178}, doi = {10.1109/ISBI.2009.5193178}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/Sabuncu09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/SabuncuYLVG09, author = {Mert R. Sabuncu and B. T. Thomas Yeo and Koen Van Leemput and Tom Vercauteren and Polina Golland}, editor = {Guang{-}Zhong Yang and David J. Hawkes and Daniel Rueckert and J. Alison Noble and Christopher J. Taylor}, title = {Asymmetric Image-Template Registration}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2009, 12th International Conference, London, UK, September 20-24, 2009, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {5761}, pages = {565--573}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04268-3\_70}, doi = {10.1007/978-3-642-04268-3\_70}, timestamp = {Sun, 02 Jun 2019 21:24:52 +0200}, biburl = {https://dblp.org/rec/conf/miccai/SabuncuYLVG09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/YeoSGF09, author = {B. T. Thomas Yeo and Mert R. Sabuncu and Polina Golland and Bruce Fischl}, editor = {Guang{-}Zhong Yang and David J. Hawkes and Daniel Rueckert and J. Alison Noble and Christopher J. Taylor}, title = {Task-Optimal Registration Cost Functions}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2009, 12th International Conference, London, UK, September 20-24, 2009, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {5761}, pages = {598--606}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04268-3\_74}, doi = {10.1007/978-3-642-04268-3\_74}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/YeoSGF09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/SabuncuYLFG09, author = {Mert R. Sabuncu and B. T. Thomas Yeo and Koen Van Leemput and Bruce Fischl and Polina Golland}, editor = {Guang{-}Zhong Yang and David J. Hawkes and Daniel Rueckert and J. Alison Noble and Christopher J. Taylor}, title = {Supervised Nonparametric Image Parcellation}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2009, 12th International Conference, London, UK, September 20-24, 2009, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {5762}, pages = {1075--1083}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04271-3\_130}, doi = {10.1007/978-3-642-04271-3\_130}, timestamp = {Sat, 30 May 2020 20:06:20 +0200}, biburl = {https://dblp.org/rec/conf/miccai/SabuncuYLFG09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/YeoSDFG08, author = {B. T. Thomas Yeo and Mert R. Sabuncu and Rahul Desikan and Bruce Fischl and Polina Golland}, title = {Effects of registration regularization and atlas sharpness on segmentation accuracy}, journal = {Medical Image Anal.}, volume = {12}, number = {5}, pages = {603--615}, year = {2008}, url = {https://doi.org/10.1016/j.media.2008.06.005}, doi = {10.1016/J.MEDIA.2008.06.005}, timestamp = {Mon, 24 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/mia/YeoSDFG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tip/SabuncuR08, author = {Mert R. Sabuncu and Peter J. Ramadge}, title = {Using Spanning Graphs for Efficient Image Registration}, journal = {{IEEE} Trans. Image Process.}, volume = {17}, number = {5}, pages = {788--797}, year = {2008}, url = {https://doi.org/10.1109/TIP.2008.918951}, doi = {10.1109/TIP.2008.918951}, timestamp = {Sun, 10 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tip/SabuncuR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/SabuncuBG08, author = {Mert R. Sabuncu and Serdar K. Balci and Polina Golland}, editor = {Dimitris N. Metaxas and Leon Axel and Gabor Fichtinger and G{\'{a}}bor Sz{\'{e}}kely}, title = {Discovering Modes of an Image Population through Mixture Modeling}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2008, 11th International Conference, New York, NY, USA, September 6-10, 2008, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {5242}, pages = {381--389}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-85990-1\_46}, doi = {10.1007/978-3-540-85990-1\_46}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/SabuncuBG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/YeoSVAFG08, author = {B. T. Thomas Yeo and Mert R. Sabuncu and Tom Vercauteren and Nicholas Ayache and Bruce Fischl and Polina Golland}, editor = {Dimitris N. Metaxas and Leon Axel and Gabor Fichtinger and G{\'{a}}bor Sz{\'{e}}kely}, title = {Spherical Demons: Fast Surface Registration}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2008, 11th International Conference, New York, NY, USA, September 6-10, 2008, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {5241}, pages = {745--753}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-85988-8\_89}, doi = {10.1007/978-3-540-85988-8\_89}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/YeoSVAFG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/DarknerSGPL08, author = {Sune Darkner and Mert R. Sabuncu and Polina Golland and Rasmus R. Paulsen and Rasmus Larsen}, editor = {Dimitris N. Metaxas and Leon Axel and Gabor Fichtinger and G{\'{a}}bor Sz{\'{e}}kely}, title = {Analysis of Surfaces Using Constrained Regression Models}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2008, 11th International Conference, New York, NY, USA, September 6-10, 2008, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {5241}, pages = {842--849}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-85988-8\_100}, doi = {10.1007/978-3-540-85988-8\_100}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/DarknerSGPL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccv/YeoSMAZGF07, author = {B. T. Thomas Yeo and Mert R. Sabuncu and Hartmut Mohlberg and Katrin Amunts and Karl Zilles and Polina Golland and Bruce Fischl}, title = {What Data to Co-register for Computing Atlases}, booktitle = {{IEEE} 11th International Conference on Computer Vision, {ICCV} 2007, Rio de Janeiro, Brazil, October 14-20, 2007}, pages = {1--8}, publisher = {{IEEE} Computer Society}, year = {2007}, url = {https://doi.org/10.1109/ICCV.2007.4409157}, doi = {10.1109/ICCV.2007.4409157}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iccv/YeoSMAZGF07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccv/ZiyanSGW07, author = {Ulas Ziyan and Mert R. Sabuncu and W. Eric L. Grimson and Carl{-}Fredrik Westin}, title = {A Robust Algorithm for Fiber-Bundle Atlas Construction}, booktitle = {{IEEE} 11th International Conference on Computer Vision, {ICCV} 2007, Rio de Janeiro, Brazil, October 14-20, 2007}, pages = {1--8}, publisher = {{IEEE} Computer Society}, year = {2007}, url = {https://doi.org/10.1109/ICCV.2007.4409143}, doi = {10.1109/ICCV.2007.4409143}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iccv/ZiyanSGW07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ZiyanSOW07, author = {Ulas Ziyan and Mert R. Sabuncu and Lauren O'Donnell and Carl{-}Fredrik Westin}, editor = {Nicholas Ayache and S{\'{e}}bastien Ourselin and Anthony J. Maeder}, title = {Nonlinear Registration of Diffusion {MR} Images Based on Fiber Bundles}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2007, 10th International Conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {4791}, pages = {351--358}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75757-3\_43}, doi = {10.1007/978-3-540-75757-3\_43}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/ZiyanSOW07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/YeoSDFG07, author = {B. T. Thomas Yeo and Mert R. Sabuncu and Rahul Desikan and Bruce Fischl and Polina Golland}, editor = {Nicholas Ayache and S{\'{e}}bastien Ourselin and Anthony J. Maeder}, title = {Effects of Registration Regularization and Atlas Sharpness on Segmentation Accuracy}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2007, 10th International Conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {4791}, pages = {683--691}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75757-3\_83}, doi = {10.1007/978-3-540-75757-3\_83}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/YeoSDFG07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eusipco/SabuncuR05, author = {Mert Rory Sabuncu and Peter J. Ramadge}, title = {Graph-theoretic image registration using prior examples}, booktitle = {13th European Signal Processing Conference, {EUSIPCO} 2005, Antalya, Turkey, September 4-8, 2005}, pages = {1--4}, publisher = {{IEEE}}, year = {2005}, url = {https://ieeexplore.ieee.org/document/7078252/}, timestamp = {Mon, 09 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/eusipco/SabuncuR05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icassp/SabuncuR05, author = {Mert R. Sabuncu and Peter J. Ramadge}, title = {Gradient Based Optimization of an {EMST} Image Registration Function}, booktitle = {2005 {IEEE} International Conference on Acoustics, Speech, and Signal Processing, {ICASSP} '05, Philadelphia, Pennsylvania, USA, March 18-23, 2005}, pages = {253--256}, publisher = {{IEEE}}, year = {2005}, url = {https://doi.org/10.1109/ICASSP.2005.1415389}, doi = {10.1109/ICASSP.2005.1415389}, timestamp = {Mon, 22 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icassp/SabuncuR05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icip/SabuncuR04, author = {Mert R. Sabuncu and Peter J. Ramadge}, title = {Fast alignment of digital images using a lower bound on an entropy metric}, booktitle = {Proceedings of the 2004 International Conference on Image Processing, {ICIP} 2004, Singapore, October 24-27, 2004}, pages = {1919--1922}, publisher = {{IEEE}}, year = {2004}, timestamp = {Wed, 16 Oct 2019 14:14:52 +0200}, biburl = {https://dblp.org/rec/conf/icip/SabuncuR04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wbir/SabuncuR03, author = {Mert R. Sabuncu and Peter J. Ramadge}, editor = {James C. Gee and J. B. Antoine Maintz and Michael W. Vannier}, title = {Spatial Information in Entropy-Based Image Registration}, booktitle = {Biomedical Image Registration, Second International Workshop, {WBIR} 2003, Philadelphia, PA, USA, June 23-24, 2003, Revised Papers}, series = {Lecture Notes in Computer Science}, volume = {2717}, pages = {132--141}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39701-4\_14}, doi = {10.1007/978-3-540-39701-4\_14}, timestamp = {Tue, 14 May 2019 10:00:49 +0200}, biburl = {https://dblp.org/rec/conf/wbir/SabuncuR03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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