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ORCIDBibTeX records: Peipei Ping
@inproceedings{DBLP:conf/kdd/ChenP24,
author = {Jake Chen and
Peipei Ping},
editor = {Ricardo Baeza{-}Yates and
Francesco Bonchi},
title = {Health Day: Building Health {AI} Ecosystem: From Data Harmonization
to Knowledge Discovery},
booktitle = {Proceedings of the 30th {ACM} {SIGKDD} Conference on Knowledge Discovery
and Data Mining, {KDD} 2024, Barcelona, Spain, August 25-29, 2024},
pages = {6691--6692},
publisher = {{ACM}},
year = {2024},
url = {https://doi.org/10.1145/3637528.3673866},
doi = {10.1145/3637528.3673866},
timestamp = {Thu, 12 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kdd/ChenP24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2406-09923,
author = {Mingyu Derek Ma and
Chenchen Ye and
Yu Yan and
Xiaoxuan Wang and
Peipei Ping and
Timothy S. Chang and
Wei Wang},
title = {CliBench: Multifaceted Evaluation of Large Language Models in Clinical
Decisions on Diagnoses, Procedures, Lab Tests Orders and Prescriptions},
journal = {CoRR},
volume = {abs/2406.09923},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2406.09923},
doi = {10.48550/ARXIV.2406.09923},
eprinttype = {arXiv},
eprint = {2406.09923},
timestamp = {Thu, 22 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2406-09923.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2407-12888,
author = {Alexander Russell Pelletier and
Joseph Ramirez and
Irsyad Adam and
Simha Sankar and
Yu Yan and
Ding Wang and
Dylan Steinecke and
Wei Wang and
Peipei Ping},
title = {Explainable Biomedical Hypothesis Generation via Retrieval Augmented
Generation enabled Large Language Models},
journal = {CoRR},
volume = {abs/2407.12888},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2407.12888},
doi = {10.48550/ARXIV.2407.12888},
eprinttype = {arXiv},
eprint = {2407.12888},
timestamp = {Thu, 22 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2407-12888.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2408-01431,
author = {Simha Sankar Baradwaj and
Destiny Gilliland and
Jack Rincon and
Henning Hermjakob and
Yu Yan and
Irsyad Adam and
Gwyneth Lemaster and
Dean Wang and
Karol Watson and
Alex Bui and
Wei Wang and
Peipei Ping},
title = {Building an Ethical and Trustworthy Biomedical {AI} Ecosystem for
the Translational and Clinical Integration of Foundational Models},
journal = {CoRR},
volume = {abs/2408.01431},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2408.01431},
doi = {10.48550/ARXIV.2408.01431},
eprinttype = {arXiv},
eprint = {2408.01431},
timestamp = {Wed, 11 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2408-01431.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-03221,
author = {Yijia Xiao and
Dylan Steinecke and
Alexander Russell Pelletier and
Yushi Bai and
Peipei Ping and
Wei Wang},
title = {Know2BIO: {A} Comprehensive Dual-View Benchmark for Evolving Biomedical
Knowledge Graphs},
journal = {CoRR},
volume = {abs/2310.03221},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.03221},
doi = {10.48550/ARXIV.2310.03221},
eprinttype = {arXiv},
eprint = {2310.03221},
timestamp = {Thu, 19 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-03221.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/ZhouYHCCSP021,
author = {Yichao Zhou and
Yu Yan and
Rujun Han and
J. Harry Caufield and
Kai{-}Wei Chang and
Yizhou Sun and
Peipei Ping and
Wei Wang},
title = {Clinical Temporal Relation Extraction with Probabilistic Soft Logic
Regularization and Global Inference},
booktitle = {Thirty-Fifth {AAAI} Conference on Artificial Intelligence, {AAAI}
2021, Thirty-Third Conference on Innovative Applications of Artificial
Intelligence, {IAAI} 2021, The Eleventh Symposium on Educational Advances
in Artificial Intelligence, {EAAI} 2021, Virtual Event, February 2-9,
2021},
pages = {14647--14655},
publisher = {{AAAI} Press},
year = {2021},
url = {https://doi.org/10.1609/aaai.v35i16.17721},
doi = {10.1609/AAAI.V35I16.17721},
timestamp = {Mon, 04 Sep 2023 12:29:24 +0200},
biburl = {https://dblp.org/rec/conf/aaai/ZhouYHCCSP021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icde/ZhouCZLCCSP021,
author = {Yichao Zhou and
Wei{-}Ting Chen and
Bowen Zhang and
David Lee and
J. Harry Caufield and
Kai{-}Wei Chang and
Yizhou Sun and
Peipei Ping and
Wei Wang},
title = {CREATe: Clinical Report Extraction and Annotation Technology},
booktitle = {37th {IEEE} International Conference on Data Engineering, {ICDE} 2021,
Chania, Greece, April 19-22, 2021},
pages = {2677--2680},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/ICDE51399.2021.00302},
doi = {10.1109/ICDE51399.2021.00302},
timestamp = {Thu, 01 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icde/ZhouCZLCCSP021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-00562,
author = {Yichao Zhou and
Wei{-}Ting Chen and
Bowen Zhang and
David Lee and
J. Harry Caufield and
Kai{-}Wei Chang and
Yizhou Sun and
Peipei Ping and
Wei Wang},
title = {CREATe: Clinical Report Extraction and Annotation Technology},
journal = {CoRR},
volume = {abs/2103.00562},
year = {2021},
url = {https://arxiv.org/abs/2103.00562},
eprinttype = {arXiv},
eprint = {2103.00562},
timestamp = {Thu, 01 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2103-00562.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-12608,
author = {Yichao Zhou and
Chelsea Ju and
J. Harry Caufield and
Kevin Shih and
Calvin Yu{-}Chian Chen and
Yizhou Sun and
Kai{-}Wei Chang and
Peipei Ping and
Wei Wang},
title = {Clinical Named Entity Recognition using Contextualized Token Representations},
journal = {CoRR},
volume = {abs/2106.12608},
year = {2021},
url = {https://arxiv.org/abs/2106.12608},
eprinttype = {arXiv},
eprint = {2106.12608},
timestamp = {Thu, 01 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-12608.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/WangGLCJLLSCPH20,
author = {Xuan Wang and
Yingjun Guan and
Weili Liu and
Aabhas Chauhan and
Enyi Jiang and
Qi Li and
David Liem and
Dibakar Sigdel and
John Caufield and
Peipei Ping and
Jiawei Han},
editor = {Asli Celikyilmaz and
Tsung{-}Hsien Wen},
title = {{EVIDENCEMINER:} Textual Evidence Discovery for Life Sciences},
booktitle = {Proceedings of the 58th Annual Meeting of the Association for Computational
Linguistics: System Demonstrations, {ACL} 2020, Online, July 5-10,
2020},
pages = {56--62},
publisher = {Association for Computational Linguistics},
year = {2020},
url = {https://doi.org/10.18653/v1/2020.acl-demos.8},
doi = {10.18653/V1/2020.ACL-DEMOS.8},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/WangGLCJLLSCPH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2012-08790,
author = {Yichao Zhou and
Yu Yan and
Rujun Han and
J. Harry Caufield and
Kai{-}Wei Chang and
Yizhou Sun and
Peipei Ping and
Wei Wang},
title = {Clinical Temporal Relation Extraction with Probabilistic Soft Logic
Regularization and Global Inference},
journal = {CoRR},
volume = {abs/2012.08790},
year = {2020},
url = {https://arxiv.org/abs/2012.08790},
eprinttype = {arXiv},
eprint = {2012.08790},
timestamp = {Thu, 01 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2012-08790.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FabregatSVMPSDH18,
author = {Antonio Fabregat and
Konstantinos Sidiropoulos and
Guilherme Viteri and
Pablo Mar{\'{\i}}n{-}Garc{\'{\i}}a and
Peipei Ping and
Lincoln Stein and
Peter D'Eustachio and
Henning Hermjakob},
title = {Reactome diagram viewer: data structures and strategies to boost performance},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1208--1214},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx752},
doi = {10.1093/BIOINFORMATICS/BTX752},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FabregatSVMPSDH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/FabregatKVSMPWS18,
author = {Antonio Fabregat and
Florian Korninger and
Guilherme Viteri and
Konstantinos Sidiropoulos and
Pablo Mar{\'{\i}}n{-}Garc{\'{\i}}a and
Peipei Ping and
Guanming Wu and
Lincoln Stein and
Peter D'Eustachio and
Henning Hermjakob},
title = {Reactome graph database: Efficient access to complex pathway data},
journal = {PLoS Comput. Biol.},
volume = {14},
number = {1},
year = {2018},
url = {https://doi.org/10.1371/journal.pcbi.1005968},
doi = {10.1371/JOURNAL.PCBI.1005968},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/FabregatKVSMPWS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SidiropoulosVSJ17,
author = {Konstantinos Sidiropoulos and
Guilherme Viteri and
Cristoffer Sevilla and
Steven Jupe and
Marissa Webber and
Marija Orlic{-}Milacic and
Bijay Jassal and
Bruce May and
Veronica Shamovsky and
Corina Duenas and
Karen Rothfels and
Lisa Matthews and
Heeyeon Song and
Lincoln Stein and
Robin Haw and
Peter D'Eustachio and
Peipei Ping and
Henning Hermjakob and
Antonio Fabregat},
title = {Reactome enhanced pathway visualization},
journal = {Bioinform.},
volume = {33},
number = {21},
pages = {3461--3467},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx441},
doi = {10.1093/BIOINFORMATICS/BTX441},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SidiropoulosVSJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/JagodnikKJOPSDV17,
author = {Kathleen M. Jagodnik and
Simon Koplev and
Sherry L. Jenkins and
Lucila Ohno{-}Machado and
Benedict Paten and
Stephan C. Sch{\"{u}}rer and
Michel Dumontier and
Ruben Verborgh and
Alex Bui and
Peipei Ping and
Neil J. McKenna and
Ravi K. Madduri and
Ajay Pillai and
Avi Ma'ayan},
title = {Developing a framework for digital objects in the Big Data to Knowledge
{(BD2K)} commons: Report from the Commons Framework Pilots workshop},
journal = {J. Biomed. Informatics},
volume = {71},
pages = {49--57},
year = {2017},
url = {https://doi.org/10.1016/j.jbi.2017.05.006},
doi = {10.1016/J.JBI.2017.05.006},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/JagodnikKJOPSDV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/RenSQWWZJTSLPWH17,
author = {Xiang Ren and
Jiaming Shen and
Meng Qu and
Xuan Wang and
Zeqiu Wu and
Qi Zhu and
Meng Jiang and
Fangbo Tao and
Saurabh Sinha and
David Liem and
Peipei Ping and
Richard M. Weinshilboum and
Jiawei Han},
editor = {Mohit Bansal and
Heng Ji},
title = {Life-iNet: {A} Structured Network-Based Knowledge Exploration and
Analytics System for Life Sciences},
booktitle = {Proceedings of the 55th Annual Meeting of the Association for Computational
Linguistics, {ACL} 2017, Vancouver, Canada, July 30 - August 4, System
Demonstrations},
pages = {55--60},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/P17-4010},
doi = {10.18653/V1/P17-4010},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/RenSQWWZJTSLPWH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/WangBJKTCHZWWBP17,
author = {Wei Wang and
Brian Bleakley and
Chelsea Ju and
Vincent Kyi and
Patrick Tan and
Howard Choi and
Xinxin Huang and
Yichao Zhou and
Justin Wood and
Ding Wang and
Alex Bui and
Peipei Ping},
title = {Aztec: {A} Platform to Render Biomedical Software Findable, Accessible,
Interoperable, and Reusable},
journal = {CoRR},
volume = {abs/1706.06087},
year = {2017},
url = {http://arxiv.org/abs/1706.06087},
eprinttype = {arXiv},
eprint = {1706.06087},
timestamp = {Thu, 01 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/WangBJKTCHZWWBP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/VillavecesJPdDD15,
author = {Jose M. Villaveces and
Rafael C. Jim{\'{e}}nez and
Pablo Porras and
Noemi del{-}Toro and
Margaret J. Duesbury and
Marine Dumousseau and
Sandra E. Orchard and
H. Choi and
Peipei Ping and
N. C. Zong and
Manor Askenazi and
Bianca Habermann and
Henning Hermjakob},
title = {Merging and scoring molecular interactions utilising existing community
standards: tools, use-cases and a case study},
journal = {Database J. Biol. Databases Curation},
volume = {2015},
year = {2015},
url = {https://doi.org/10.1093/database/bau131},
doi = {10.1093/DATABASE/BAU131},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/VillavecesJPdDD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GomezGSVGGMLAdDOVHZPCJ13,
author = {John G{\'{o}}mez and
Leyla J. Garc{\'{\i}}a and
Gustavo A. Salazar and
Jose M. Villaveces and
Swanand P. Gore and
Alexander Garc{\'{\i}}a Castro and
Maria Jesus Martin and
Guillaume Launay and
Rafael Alc{\'{a}}ntara and
Noemi del{-}Toro and
Marine Dumousseau and
Sandra E. Orchard and
Sameer Velankar and
Henning Hermjakob and
Chenggong Zong and
Peipei Ping and
Manuel Corpas and
Rafael C. Jim{\'{e}}nez},
title = {BioJS: an open source JavaScript framework for biological data visualization},
journal = {Bioinform.},
volume = {29},
number = {8},
pages = {1103--1104},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt100},
doi = {10.1093/BIOINFORMATICS/BTT100},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GomezGSVGGMLAdDOVHZPCJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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