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ORCIDBibTeX records: Robert Petryszak
@article{DBLP:journals/bioinformatics/DrysdaleCPGBGGH20,
author = {Rachel Drysdale and
Charles E. Cook and
Robert Petryszak and
Vivienne Baillie Gerritsen and
Mary Barlow and
Elisabeth Gasteiger and
Franziska Gruhl and
J{\"{u}}rgen Haas and
Jerry Lanfear and
Rodrigo Lopez and
Nicole Redaschi and
Heinz Stockinger and
Daniel Teixeira and
Aravind Venkatesan and
Alex Bateman and
Alan J. Bridge and
Guy Cochrane and
Robert D. Finn and
Frank Oliver Gl{\"{o}}ckner and
Marc Hanauer and
Thomas M. Keane and
Andrew Leach and
Luana Licata and
Per Oksvold and
Sandra E. Orchard and
Christine A. Orengo and
Helen E. Parkinson and
Bengt Persson and
Pablo Porras and
Jordi Rambla and
Ana Rath and
Charlotte Rodwell and
Ugis Sarkans and
Dietmar Schomburg and
Ian Sillitoe and
J. Dylan Spalding and
Mathias Uhl{\'{e}}n and
Sameer Velankar and
Juan Antonio Vizca{\'{\i}}no and
Kalle von Feilitzen and
Christian von Mering and
Andrew D. Yates and
Niklas Blomberg and
Christine Durinx and
Johanna R. McEntyre},
title = {The {ELIXIR} Core Data Resources: fundamental infrastructure for the
life sciences},
journal = {Bioinform.},
volume = {36},
number = {8},
pages = {2636--2642},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz959},
doi = {10.1093/BIOINFORMATICS/BTZ959},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DrysdaleCPGBGGH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PapatheodorouMM20,
author = {Irene Papatheodorou and
Pablo A. Moreno and
Jonathan R. Manning and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Nancy George and
Silvie Fexova and
Nuno A. Fonseca and
Anja F{\"{u}}llgrabe and
Matthew Green and
Ni Huang and
Laura Huerta and
Haider Iqbal and
Monica Jianu and
Suhaib Mohammed and
Lingyun Zhao and
Andrew F. Jarnuczak and
Simon Jupp and
John C. Marioni and
Kerstin B. Meyer and
Robert Petryszak and
Cesar Augusto Prada Medina and
Carlos Talavera{-}L{\'{o}}pez and
Sarah A. Teichmann and
Juan Antonio Vizca{\'{\i}}no and
Alvis Brazma},
title = {Expression Atlas update: from tissues to single cells},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D77--D83},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz947},
doi = {10.1093/NAR/GKZ947},
timestamp = {Wed, 24 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PapatheodorouMM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AtharFGIHASFPPS19,
author = {Awais Athar and
Anja F{\"{u}}llgrabe and
Nancy George and
Haider Iqbal and
Laura Huerta and
Ahmed Ali and
Catherine Snow and
Nuno A. Fonseca and
Robert Petryszak and
Irene Papatheodorou and
Ugis Sarkans and
Alvis Brazma},
title = {ArrayExpress update - from bulk to single-cell expression data},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D711--D715},
year = {2019},
url = {https://doi.org/10.1093/nar/gky964},
doi = {10.1093/NAR/GKY964},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AtharFGIHASFPPS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Tello-RuizNSGCO18,
author = {Marcela K. Tello{-}Ruiz and
Sushma Naithani and
Joshua C. Stein and
Parul Gupta and
Michael Campbell and
Andrew Olson and
Sharon Wei and
Justin Preece and
Matthew J. Geniza and
Yinping Jiao and
Young Koung Lee and
Bo Wang and
Joseph Mulvaney and
Kapeel Chougule and
Justin Elser and
Noor Al{-}Bader and
Sunita Kumari and
James Thomason and
Vivek Kumar and
Daniel M. Bolser and
Guy Naamati and
Electra Tapanari and
Nuno A. Fonseca and
Laura Huerta and
Haider Iqbal and
Maria Keays and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Y. Amy Tang and
Antonio Fabregat and
Peter D'Eustachio and
Joel Weiser and
Lincoln D. Stein and
Robert Petryszak and
Irene Papatheodorou and
Paul J. Kersey and
Patti Lockhart and
Crispin Taylor and
Pankaj Jaiswal and
Doreen Ware},
title = {Gramene 2018: unifying comparative genomics and pathway resources
for plant research},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D1181--D1189},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1111},
doi = {10.1093/NAR/GKX1111},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Tello-RuizNSGCO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PapatheodorouFK18,
author = {Irene Papatheodorou and
Nuno A. Fonseca and
Maria Keays and
Y. Amy Tang and
Elisabet Barrera and
Wojciech Bazant and
Melissa L. Burke and
Anja F{\"{u}}llgrabe and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Nancy George and
Laura Huerta and
Satu Koskinen and
Suhaib Mohammed and
Matthew J. Geniza and
Justin Preece and
Pankaj Jaiswal and
Andrew F. Jarnuczak and
Wolfgang Huber and
Oliver Stegle and
Juan Antonio Vizca{\'{\i}}no and
Alvis Brazma and
Robert Petryszak},
title = {Expression Atlas: gene and protein expression across multiple studies
and organisms},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D246--D251},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1158},
doi = {10.1093/NAR/GKX1158},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PapatheodorouFK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetryszakFFHKTB17,
author = {Robert Petryszak and
Nuno A. Fonseca and
Anja F{\"{u}}llgrabe and
Laura Huerta and
Maria Keays and
Y. Amy Tang and
Alvis Brazma},
title = {The RNASeq-er {API} - a gateway to systematically updated analysis
of public RNA-seq data},
journal = {Bioinform.},
volume = {33},
number = {14},
pages = {2218--2220},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx143},
doi = {10.1093/BIOINFORMATICS/BTX143},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PetryszakFFHKTB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NaithaniPDGADWF17,
author = {Sushma Naithani and
Justin Preece and
Peter D'Eustachio and
Parul Gupta and
Vindhya Amarasinghe and
Palitha Dharmawardhana and
Guanming Wu and
Antonio Fabregat and
Justin Elser and
Joel Weiser and
Maria Keays and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Robert Petryszak and
Lincoln D. Stein and
Doreen Ware and
Pankaj Jaiswal},
title = {Plant Reactome: a resource for plant pathways and comparative analysis},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1029--D1039},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw932},
doi = {10.1093/NAR/GKW932},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NaithaniPDGADWF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KoscielnyACCFGH17,
author = {Gautier Koscielny and
Peter An and
Denise Carvalho{-}Silva and
Jennifer A. Cham and
Luca Fumis and
Rippa Gasparyan and
Samiul Hasan and
Nikiforos Karamanis and
Michael Maguire and
Eliseo Papa and
Andrea Pierleoni and
Miguel Pignatelli and
Theo Platt and
Francis Rowland and
Priyanka Wankar and
A. Patr{\'{\i}}cia Bento and
Tony Burdett and
Antonio Fabregat and
Simon A. Forbes and
Anna Gaulton and
Cristina Yenyxe Gonz{\'{a}}lez and
Henning Hermjakob and
Anne Hersey and
Steven Jupe and
Senay Kafkas and
Maria Keays and
Catherine Leroy and
Francisco{-}Javier Lopez and
Mar{\'{\i}}a P. Magari{\~{n}}os and
James Malone and
Johanna R. McEntyre and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Claire O'Donovan and
Irene Papatheodorou and
Helen E. Parkinson and
Barbara Palka and
Justin E. Paschall and
Robert Petryszak and
Naruemon Pratanwanich and
Sirarat Sarntivijai and
Gary Saunders and
Konstantinos Sidiropoulos and
Thomas Smith and
Zbyslaw Sondka and
Oliver Stegle and
Y. Amy Tang and
Edward Turner and
Brendan W. Vaughan and
Olga Vrousgou and
Xavier Watkins and
Maria Jesus Martin and
Philippe Sanseau and
Jessica Vamathevan and
Ewan Birney and
Jeffrey Barrett and
Ian Dunham},
title = {Open Targets: a platform for therapeutic target identification and
validation},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D985--D994},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1055},
doi = {10.1093/NAR/GKW1055},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KoscielnyACCFGH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PetryszakKTFBBF16,
author = {Robert Petryszak and
Maria Keays and
Y. Amy Tang and
Nuno A. Fonseca and
Elisabet Barrera and
Tony Burdett and
Anja F{\"{u}}llgrabe and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Simon Jupp and
Satu Koskinen and
Oliver Mannion and
Laura Huerta and
Karine Megy and
Catherine Snow and
Eleanor Williams and
Mitra Barzine and
Emma Hastings and
Hendrik Weisser and
James C. Wright and
Pankaj Jaiswal and
Wolfgang Huber and
Jyoti Choudhary and
Helen E. Parkinson and
Alvis Brazma},
title = {Expression Atlas update - an integrated database of gene and protein
expression in humans, animals and plants},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {746--752},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1045},
doi = {10.1093/NAR/GKV1045},
timestamp = {Tue, 26 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PetryszakKTFBBF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Tello-RuizSWPON16,
author = {Marcela K. Tello{-}Ruiz and
Joshua C. Stein and
Sharon Wei and
Justin Preece and
Andrew Olson and
Sushma Naithani and
Vindhya Amarasinghe and
Palitha Dharmawardhana and
Yinping Jiao and
Joseph Mulvaney and
Sunita Kumari and
Kapeel Chougule and
Justin Elser and
Bo Wang and
James Thomason and
Daniel M. Bolser and
Arnaud Kerhornou and
Brandon Walts and
Nuno A. Fonseca and
Laura Huerta and
Maria Keays and
Y. Amy Tang and
Helen E. Parkinson and
Antonio Fabregat and
Sheldon J. McKay and
Joel Weiser and
Peter D'Eustachio and
Lincoln Stein and
Robert Petryszak and
Paul J. Kersey and
Pankaj Jaiswal and
Doreen Ware},
title = {Gramene 2016: comparative plant genomics and pathway resources},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1133--1140},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1179},
doi = {10.1093/NAR/GKV1179},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Tello-RuizSWPON16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KolesnikovHKMTWDKBBMPRTPPSB15,
author = {Nikolay Kolesnikov and
Emma Hastings and
Maria Keays and
Olga Melnichuk and
Y. Amy Tang and
Eleanor Williams and
Miroslaw Dylag and
Natalja Kurbatova and
Marco Brandizi and
Tony Burdett and
Karyn Megy and
Ekaterina Pilicheva and
Gabriella Rustici and
Andrew Tikhonov and
Helen E. Parkinson and
Robert Petryszak and
Ugis Sarkans and
Alvis Brazma},
title = {ArrayExpress update - simplifying data submissions},
journal = {Nucleic Acids Res.},
volume = {43},
number = {Database-Issue},
pages = {1113--1116},
year = {2015},
url = {https://doi.org/10.1093/nar/gku1057},
doi = {10.1093/NAR/GKU1057},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KolesnikovHKMTWDKBBMPRTPPSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PetryszakBFFGHHJKKMMMMRTTWMPB14,
author = {Robert Petryszak and
Tony Burdett and
Benedetto Fiorelli and
Nuno A. Fonseca and
Mar Gonzalez{-}Porta and
Emma Hastings and
Wolfgang Huber and
Simon Jupp and
Maria Keays and
Nataliya Kryvych and
Julie A. McMurry and
John C. Marioni and
James Malone and
Karine Megy and
Gabriella Rustici and
Y. Amy Tang and
Jan Taubert and
Eleanor Williams and
Oliver Mannion and
Helen E. Parkinson and
Alvis Brazma},
title = {Expression Atlas update - a database of gene and transcript expression
from microarray- and sequencing-based functional genomics experiments},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {926--932},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1270},
doi = {10.1093/NAR/GKT1270},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PetryszakBFFGHHJKKMMMMRTTWMPB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/ChambersDGHVPHBMO13,
author = {Jon Chambers and
Mark Davies and
Anna Gaulton and
Anne Hersey and
Sameer Velankar and
Robert Petryszak and
Janna Hastings and
Louisa J. Bellis and
Shaun McGlinchey and
John P. Overington},
title = {UniChem: a unified chemical structure cross-referencing and identifier
tracking system},
journal = {J. Cheminformatics},
volume = {5},
pages = {3},
year = {2013},
url = {https://doi.org/10.1186/1758-2946-5-3},
doi = {10.1186/1758-2946-5-3},
timestamp = {Thu, 14 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/ChambersDGHVPHBMO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KapusheskyABCFFHKKKKMMPPRTTWZPB12,
author = {Misha Kapushesky and
Tomasz Adamusiak and
Tony Burdett and
Aed{\'{\i}}n C. Culhane and
Anna Farne and
Alexey Filippov and
Ele Holloway and
Andrey Klebanov and
Nataliya Kryvych and
Natalja Kurbatova and
Pavel Kurnosov and
James Malone and
Olga Melnichuk and
Robert Petryszak and
Nikolay Pultsin and
Gabriella Rustici and
Andrew Tikhonov and
Ravensara S. Travillian and
Eleanor Williams and
Andrey Zorin and
Helen E. Parkinson and
Alvis Brazma},
title = {Gene Expression Atlas update - a value-added database of microarray
and sequencing-based functional genomics experiments},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {1077--1081},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr913},
doi = {10.1093/NAR/GKR913},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KapusheskyABCFFHKKKKMMPPRTTWZPB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MulderAA07,
author = {Nicola J. Mulder and
Rolf Apweiler and
Teresa K. Attwood and
Amos Bairoch and
Alex Bateman and
David Binns and
Peer Bork and
Virginie Buillard and
Lorenzo Cerutti and
Richard R. Copley and
Emmanuel Courcelle and
Ujjwal Das and
Louise C. Daugherty and
Mark Dibley and
Robert D. Finn and
Wolfgang Fleischmann and
Julian Gough and
Daniel H. Haft and
Nicolas Hulo and
Sarah Hunter and
Daniel Kahn and
Alexander Kanapin and
Anish Kejariwal and
Alberto Labarga and
Petra S. Langendijk{-}Genevaux and
David Lonsdale and
Rodrigo Lopez and
Ivica Letunic and
Martin Madera and
John Maslen and
Craig McAnulla and
Jennifer McDowall and
Jaina Mistry and
Alex L. Mitchell and
Anastasia N. Nikolskaya and
Sandra E. Orchard and
Christine A. Orengo and
Robert Petryszak and
Jeremy D. Selengut and
Christian J. A. Sigrist and
Paul D. Thomas and
Franck Valentin and
Derek Wilson and
Cathy H. Wu and
Corin Yeats},
title = {New developments in the InterPro database},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {224--228},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl841},
doi = {10.1093/NAR/GKL841},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MulderAA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetryszakKWA05,
author = {Robert Petryszak and
Ernst Kretschmann and
Daniela Wieser and
Rolf Apweiler},
title = {The predictive power of the CluSTr database},
journal = {Bioinform.},
volume = {21},
number = {18},
pages = {3604--3609},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti542},
doi = {10.1093/BIOINFORMATICS/BTI542},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PetryszakKWA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KerseyBMHPKKDMPGKFDMRDPRA05,
author = {Paul J. Kersey and
Lawrence Bower and
Lorna Morris and
Alan Horne and
Robert Petryszak and
Carola Kanz and
Alexander Kanapin and
Ujjwal Das and
Karine Michoud and
Isabelle Phan and
Alexandre Gattiker and
Tamara Kulikova and
Nadeem Faruque and
Karyn Duggan and
Peter McLaren and
Britt Reimholz and
Laurent Duret and
Simon Penel and
Ingmar Reuter and
Rolf Apweiler},
title = {Integr8 and Genome Reviews: integrated views of complete genomes and
proteomes},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {297--302},
year = {2005},
url = {https://doi.org/10.1093/nar/gki039},
doi = {10.1093/NAR/GKI039},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KerseyBMHPKKDMPGKFDMRDPRA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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