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ORCIDBibTeX records: Jonathan Ozik
@article{DBLP:journals/ploscb/HailegiorgisICI23,
author = {Atesmachew Hailegiorgis and
Yuji Ishida and
Nicholson T. Collier and
Michio Imamura and
Zhenzhen Shi and
Vladimir Reinharz and
Masataka Tsuge and
Danny Barash and
Nobuhiko Hiraga and
Hiroshi Yokomichi and
Chise Tateno and
Jonathan Ozik and
Susan L. Uprichard and
Kazuaki Chayama and
Harel Dahari},
title = {Modeling suggests that virion production cycles within individual
cells is key to understanding acute hepatitis {B} virus infection
kinetics},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {8},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1011309},
doi = {10.1371/JOURNAL.PCBI.1011309},
timestamp = {Sat, 14 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/HailegiorgisICI23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/HateganMarandiucMCMOTWWCFSJL23,
author = {Mihael Hategan{-}Marandiuc and
Andr{\'{e}} Merzky and
Nicholson T. Collier and
Ketan Maheshwari and
Jonathan Ozik and
Matteo Turilli and
Andreas Wilke and
Justin M. Wozniak and
Kyle Chard and
Ian T. Foster and
Rafael Ferreira da Silva and
Shantenu Jha and
Daniel E. Laney},
title = {{PSI/J:} {A} Portable Interface for Submitting, Monitoring, and Managing
Jobs},
booktitle = {19th {IEEE} International Conference on e-Science, e-Science 2023,
Limassol, Cyprus, October 9-13, 2023},
pages = {1--10},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/e-Science58273.2023.10254912},
doi = {10.1109/E-SCIENCE58273.2023.10254912},
timestamp = {Fri, 29 Sep 2023 13:35:31 +0200},
biburl = {https://dblp.org/rec/conf/eScience/HateganMarandiucMCMOTWWCFSJL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/CollierWSBBFWCO23,
author = {Nicholson T. Collier and
Justin M. Wozniak and
Abby Stevens and
Yadu N. Babuji and
Micka{\"{e}}l Binois and
Arindam Fadikar and
Alexandra W{\"{u}}rth and
Kyle Chard and
Jonathan Ozik},
title = {Developing Distributed High-performance Computing Capabilities of
an Open Science Platform for Robust Epidemic Analysis},
booktitle = {{IEEE} International Parallel and Distributed Processing Symposium,
{IPDPS} 2023 - Workshops, St. Petersburg, FL, USA, May 15-19, 2023},
pages = {868--877},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/IPDPSW59300.2023.00143},
doi = {10.1109/IPDPSW59300.2023.00143},
timestamp = {Wed, 09 Aug 2023 16:25:12 +0200},
biburl = {https://dblp.org/rec/conf/ipps/CollierWSBBFWCO23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/FadikarCSOBT23,
author = {Arindam Fadikar and
Nicholson T. Collier and
Abby Stevens and
Jonathan Ozik and
Micka{\"{e}}l Binois and
Kok Ben Toh},
title = {Trajectory-Oriented Optimization of Stochastic Epidemiological Models},
booktitle = {Winter Simulation Conference, {WSC} 2023, San Antonio, TX, USA, December
10-13, 2023},
pages = {1244--1255},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/WSC60868.2023.10408258},
doi = {10.1109/WSC60868.2023.10408258},
timestamp = {Sat, 24 Feb 2024 20:42:44 +0100},
biburl = {https://dblp.org/rec/conf/wsc/FadikarCSOBT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-14244,
author = {Nicholson T. Collier and
Justin M. Wozniak and
Abby Stevens and
Yadu N. Babuji and
Micka{\"{e}}l Binois and
Arindam Fadikar and
Alexandra W{\"{u}}rth and
Kyle Chard and
Jonathan Ozik},
title = {Developing Distributed High-performance Computing Capabilities of
an Open Science Platform for Robust Epidemic Analysis},
journal = {CoRR},
volume = {abs/2304.14244},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.14244},
doi = {10.48550/ARXIV.2304.14244},
eprinttype = {arXiv},
eprint = {2304.14244},
timestamp = {Fri, 11 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-14244.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-07895,
author = {Mihael Hategan{-}Marandiuc and
Andr{\'{e}} Merzky and
Nicholson T. Collier and
Ketan Maheshwari and
Jonathan Ozik and
Matteo Turilli and
Andreas Wilke and
Justin M. Wozniak and
Kyle Chard and
Ian T. Foster and
Rafael Ferreira da Silva and
Shantenu Jha and
Daniel E. Laney},
title = {{PSI/J:} {A} Portable Interface for Submitting, Monitoring, and Managing
Jobs},
journal = {CoRR},
volume = {abs/2307.07895},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2307.07895},
doi = {10.48550/ARXIV.2307.07895},
eprinttype = {arXiv},
eprint = {2307.07895},
timestamp = {Sun, 20 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2307-07895.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-04602,
author = {Abby Stevens and
Jonathan Ozik and
Kyle Chard and
Jaline Gerardin and
Justin M. Wozniak},
title = {{NSF} {RESUME} {HPC} Workshop: High-Performance Computing and Large-Scale
Data Management in Service of Epidemiological Modeling},
journal = {CoRR},
volume = {abs/2308.04602},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2308.04602},
doi = {10.48550/ARXIV.2308.04602},
eprinttype = {arXiv},
eprint = {2308.04602},
timestamp = {Tue, 22 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2308-04602.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/DeYoreoROC22,
author = {Maria DeYoreo and
Carolyn M. Rutter and
Jonathan Ozik and
Nicholson T. Collier},
title = {Sequentially calibrating a Bayesian microsimulation model to incorporate
new information and assumptions},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {22},
number = {1},
pages = {12},
year = {2022},
url = {https://doi.org/10.1186/s12911-021-01726-0},
doi = {10.1186/S12911-021-01726-0},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/DeYoreoROC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/CollierO22,
author = {Nicholson T. Collier and
Jonathan Ozik},
title = {Distributed Agent-Based Simulation with Repast4Py},
booktitle = {Winter Simulation Conference, {WSC} 2022, Singapore, December 11-14,
2022},
pages = {192--206},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/WSC57314.2022.10015389},
doi = {10.1109/WSC57314.2022.10015389},
timestamp = {Wed, 08 Feb 2023 22:09:21 +0100},
biburl = {https://dblp.org/rec/conf/wsc/CollierO22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/OzikWCMB21,
author = {Jonathan Ozik and
Justin M. Wozniak and
Nicholson T. Collier and
Charles M. Macal and
Micka{\"{e}}l Binois},
title = {A population data-driven workflow for {COVID-19} modeling and learning},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {35},
number = {5},
year = {2021},
url = {https://doi.org/10.1177/10943420211035164},
doi = {10.1177/10943420211035164},
timestamp = {Tue, 05 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijhpca/OzikWCMB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LindauMKABCCHMO21,
author = {Stacy Tessler Lindau and
Jennifer A. Makelarski and
Chaitanya Kaligotla and
Emily Abramsohn and
David G. Beiser and
Chiahung Chou and
Nicholson T. Collier and
Elbert S. Huang and
Charles M. Macal and
Jonathan Ozik and
Elizabeth L. Tung},
title = {Building and experimenting with an agent-based model to study the
population-level impact of CommunityRx, a clinic-based community resource
referral intervention},
journal = {PLoS Comput. Biol.},
volume = {17},
number = {10},
year = {2021},
url = {https://doi.org/10.1371/journal.pcbi.1009471},
doi = {10.1371/JOURNAL.PCBI.1009471},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/LindauMKABCCHMO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/simulation/CockrellOCA21,
author = {Chase Cockrell and
Jonathan Ozik and
Nick Collier and
Gary An},
title = {Nested active learning for efficient model contextualization and parameterization:
pathway to generating simulated populations using multi-scale computational
models},
journal = {Simul.},
volume = {97},
number = {4},
year = {2021},
url = {https://doi.org/10.1177/0037549720975075},
doi = {10.1177/0037549720975075},
timestamp = {Mon, 03 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/simulation/CockrellOCA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/MucenicKSOCM21,
author = {Bogdan Mucenic and
Chaitanya Kaligotla and
Abby Stevens and
Jonathan Ozik and
Nicholson T. Collier and
Charles M. Macal},
title = {Load Balancing Schemes for Large Synthetic Population-Based Complex
Simulators},
booktitle = {{IEEE} International Parallel and Distributed Processing Symposium
Workshops, {IPDPS} Workshops 2021, Portland, OR, USA, June 17-21,
2021},
pages = {985--988},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/IPDPSW52791.2021.00156},
doi = {10.1109/IPDPSW52791.2021.00156},
timestamp = {Mon, 28 Jun 2021 11:45:26 +0200},
biburl = {https://dblp.org/rec/conf/ipps/MucenicKSOCM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/TataraSQCPBFSMO21,
author = {Eric Tatara and
John A. Schneider and
Madeline Quasebarth and
Nicholson T. Collier and
Harold Pollack and
Basmattee Boodram and
Samuel H. Friedman and
Elizabeth Salisbury{-}Afshar and
Mary Ellen Mackesy{-}Amiti and
Jonathan Ozik},
title = {Application of Distributed Agent-based Modeling to Investigate Opioid
Use Outcomes in Justice Involved Populations},
booktitle = {{IEEE} International Parallel and Distributed Processing Symposium
Workshops, {IPDPS} Workshops 2021, Portland, OR, USA, June 17-21,
2021},
pages = {989--997},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/IPDPSW52791.2021.00157},
doi = {10.1109/IPDPSW52791.2021.00157},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/TataraSQCPBFSMO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/works-ws/SilvaCCABBCCNEF21,
author = {Rafael Ferreira da Silva and
Henri Casanova and
Kyle Chard and
Ilkay Altintas and
Rosa M. Badia and
Bartosz Balis and
Tain{\~{a}} Coleman and
Frederik Coppens and
Frank Di Natale and
Bjoern Enders and
Thomas Fahringer and
Rosa Filgueira and
Grigori Fursin and
Daniel Garijo and
Carole A. Goble and
Dorran Howell and
Shantenu Jha and
Daniel S. Katz and
Daniel E. Laney and
Ulf Leser and
Maciej Malawski and
Kshitij Mehta and
Lo{\"{\i}}c Pottier and
Jonathan Ozik and
J. Luc Peterson and
Lavanya Ramakrishnan and
Stian Soiland{-}Reyes and
Douglas Thain and
Matthew Wolf},
title = {A Community Roadmap for Scientific Workflows Research and Development},
booktitle = {2021 {IEEE} Workshop on Workflows in Support of Large-Scale Science
(WORKS), St. Louis, MO, USA, November 15, 2021},
pages = {81--90},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/WORKS54523.2021.00016},
doi = {10.1109/WORKS54523.2021.00016},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/works-ws/SilvaCCABBCCNEF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-09181,
author = {Rafael Ferreira da Silva and
Henri Casanova and
Kyle Chard and
Dan Laney and
Dong H. Ahn and
Shantenu Jha and
Carole A. Goble and
Lavanya Ramakrishnan and
J. Luc Peterson and
Bjoern Enders and
Douglas Thain and
Ilkay Altintas and
Yadu N. Babuji and
Rosa M. Badia and
Vivien Bonazzi and
Tain{\~{a}} Coleman and
Michael R. Crusoe and
Ewa Deelman and
Frank Di Natale and
Paolo Di Tommaso and
Thomas Fahringer and
Rosa Filgueira and
Grigori Fursin and
Alex Ganose and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Daniel S. Katz and
Olga A. Kuchar and
Ana Kupresanin and
Bertram Lud{\"{a}}scher and
Ketan Maheshwari and
Marta Mattoso and
Kshitij Mehta and
Todd S. Munson and
Jonathan Ozik and
Tom Peterka and
Loic Pottier and
Tim Randles and
Stian Soiland{-}Reyes and
Benjam{\'{\i}}n Tovar and
Matteo Turilli and
Thomas D. Uram and
Karan Vahi and
Michael Wilde and
Matthew Wolf and
Justin M. Wozniak},
title = {Workflows Community Summit: Bringing the Scientific Workflows Community
Together},
journal = {CoRR},
volume = {abs/2103.09181},
year = {2021},
url = {https://arxiv.org/abs/2103.09181},
eprinttype = {arXiv},
eprint = {2103.09181},
timestamp = {Tue, 03 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2103-09181.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-05177,
author = {Rafael Ferreira da Silva and
Henri Casanova and
Kyle Chard and
Tain{\~{a}} Coleman and
Dan Laney and
Dong H. Ahn and
Shantenu Jha and
Dorran Howell and
Stian Soiland{-}Reyes and
Ilkay Altintas and
Douglas Thain and
Rosa Filgueira and
Yadu N. Babuji and
Rosa M. Badia and
Bartosz Balis and
Silvina Ca{\'{\i}}no{-}Lores and
Scott Callaghan and
Frederik Coppens and
Michael R. Crusoe and
Kaushik De and
Frank Di Natale and
Tu Mai Anh Do and
Bjoern Enders and
Thomas Fahringer and
Anne Fouilloux and
Grigori Fursin and
Alban Gaignard and
Alex Ganose and
Daniel Garijo and
Sandra Gesing and
Carole A. Goble and
Adil Hasan and
Sebastiaan Huber and
Daniel S. Katz and
Ulf Leser and
Douglas Lowe and
Bertram Lud{\"{a}}scher and
Ketan Maheshwari and
Maciej Malawski and
Rajiv Mayani and
Kshitij Mehta and
Andr{\'{e}} Merzky and
Todd S. Munson and
Jonathan Ozik and
Lo{\"{\i}}c Pottier and
Sashko Ristov and
Mehdi Roozmeh and
Renan Souza and
Fr{\'{e}}d{\'{e}}ric Suter and
Benjam{\'{\i}}n Tovar and
Matteo Turilli and
Karan Vahi and
Alvaro Vidal{-}Torreira and
Wendy R. Whitcup and
Michael Wilde and
Alan R. Williams and
Matthew Wolf and
Justin M. Wozniak},
title = {Workflows Community Summit: Advancing the State-of-the-art of Scientific
Workflows Management Systems Research and Development},
journal = {CoRR},
volume = {abs/2106.05177},
year = {2021},
url = {https://arxiv.org/abs/2106.05177},
eprinttype = {arXiv},
eprint = {2106.05177},
timestamp = {Sun, 17 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-05177.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2110-02168,
author = {Rafael Ferreira da Silva and
Henri Casanova and
Kyle Chard and
Ilkay Altintas and
Rosa M. Badia and
Bartosz Balis and
Tain{\~{a}} Coleman and
Frederik Coppens and
Frank Di Natale and
Bjoern Enders and
Thomas Fahringer and
Rosa Filgueira and
Grigori Fursin and
Daniel Garijo and
Carole A. Goble and
Dorran Howell and
Shantenu Jha and
Daniel S. Katz and
Daniel E. Laney and
Ulf Leser and
Maciej Malawski and
Kshitij Mehta and
Lo{\"{\i}}c Pottier and
Jonathan Ozik and
J. Luc Peterson and
Lavanya Ramakrishnan and
Stian Soiland{-}Reyes and
Douglas Thain and
Matthew Wolf},
title = {A Community Roadmap for Scientific Workflows Research and Development},
journal = {CoRR},
volume = {abs/2110.02168},
year = {2021},
url = {https://arxiv.org/abs/2110.02168},
eprinttype = {arXiv},
eprint = {2110.02168},
timestamp = {Sun, 20 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2110-02168.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasss/KaligotlaOCMBMH20,
author = {Chaitanya Kaligotla and
Jonathan Ozik and
Nicholson T. Collier and
Charles M. Macal and
Kelly Boyd and
Jennifer A. Makelarski and
Elbert S. Huang and
Stacy T. Lindau},
title = {Model Exploration of an Information-Based Healthcare Intervention
Using Parallelization and Active Learning},
journal = {J. Artif. Soc. Soc. Simul.},
volume = {23},
number = {4},
year = {2020},
url = {https://doi.org/10.18564/jasss.4379},
doi = {10.18564/JASSS.4379},
timestamp = {Tue, 22 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jasss/KaligotlaOCMBMH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pyhpc-ws/CollierOT20,
author = {Nicholson T. Collier and
Jonathan Ozik and
Eric R. Tatara},
title = {Experiences in Developing a Distributed Agent-based Modeling Toolkit
with Python},
booktitle = {9th {IEEE/ACM} Workshop on Python for High-Performance and Scientific
Computing, PyHPC@SC 2020, Atlanta, GA, USA, November 13, 2020},
pages = {1--12},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/PyHPC51966.2020.00006},
doi = {10.1109/PYHPC51966.2020.00006},
timestamp = {Fri, 30 Apr 2021 12:35:40 +0200},
biburl = {https://dblp.org/rec/conf/pyhpc-ws/CollierOT20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/WozniakYMNCOBS20,
author = {Justin M. Wozniak and
Hyun Seung Yoo and
Jamaludin Mohd{-}Yusof and
Bogdan Nicolae and
Nicholson T. Collier and
Jonathan Ozik and
Thomas S. Brettin and
Rick Stevens},
title = {High-bypass Learning: Automated Detection of Tumor Cells That Significantly
Impact Drug Response},
booktitle = {6th {IEEE/ACM} Workshop on Machine Learning in High Performance Computing
Environments, and 1st Workshop on Artificial Intelligence and Machine
Learning for Scientific Applications {MLHPC/AI4S} 2020, Atlanta, GA,
USA, November 12, 2020},
pages = {40--49},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/MLHPCAI4S51975.2020.00012},
doi = {10.1109/MLHPCAI4S51975.2020.00012},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sc/WozniakYMNCOBS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/TataraCOGCDMB19,
author = {Eric Tatara and
Nicholson T. Collier and
Jonathan Ozik and
Alexander Gutfraind and
Scott J. Cotler and
Harel Dahari and
Marian Major and
Basmattee Boodram},
title = {Multi-Objective Model Exploration of Hepatitis {C} Elimination in
an Agent-Based Model of People who Inject Drugs},
booktitle = {2019 Winter Simulation Conference, {WSC} 2019, National Harbor, MD,
USA, December 8-11, 2019},
pages = {1008--1019},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/WSC40007.2019.9004747},
doi = {10.1109/WSC40007.2019.9004747},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wsc/TataraCOGCDMB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/BellGMOS19,
author = {David Bell and
Derek Groen and
Navonil Mustafee and
Jonathan Ozik and
Steffen Stra{\ss}burger},
title = {Hybrid Simulation Development - Is It Just Analytics?},
booktitle = {2019 Winter Simulation Conference, {WSC} 2019, National Harbor, MD,
USA, December 8-11, 2019},
pages = {1352--1365},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/WSC40007.2019.9004923},
doi = {10.1109/WSC40007.2019.9004923},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wsc/BellGMOS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WozniakJBOCBXBS18,
author = {Justin M. Wozniak and
Rajeev Jain and
Prasanna Balaprakash and
Jonathan Ozik and
Nicholson T. Collier and
John Bauer and
Fangfang Xia and
Thomas S. Brettin and
Rick Stevens and
Jamaludin Mohd{-}Yusof and
Cristina Garcia{-}Cardona and
Brian Van Essen and
Matthew Baughman},
title = {CANDLE/Supervisor: a workflow framework for machine learning applied
to cancer research},
journal = {{BMC} Bioinform.},
volume = {19-S},
number = {18},
pages = {59--69},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2508-4},
doi = {10.1186/S12859-018-2508-4},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WozniakJBOCBXBS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OzikCWMCFGHAM18,
author = {Jonathan Ozik and
Nicholson T. Collier and
Justin M. Wozniak and
Charles M. Macal and
Chase Cockrell and
Samuel H. Friedman and
Ahmadreza Ghaffarizadeh and
Randy W. Heiland and
Gary An and
Paul Macklin},
title = {High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS
workflow},
journal = {{BMC} Bioinform.},
volume = {19-S},
number = {18},
pages = {81--97},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2510-x},
doi = {10.1186/S12859-018-2510-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OzikCWMCFGHAM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcss/OzikCWMA18,
author = {Jonathan Ozik and
Nicholson T. Collier and
Justin M. Wozniak and
Charles M. Macal and
Gary An},
title = {Extreme-Scale Dynamic Exploration of a Distributed Agent-Based Model
With the {EMEWS} Framework},
journal = {{IEEE} Trans. Comput. Soc. Syst.},
volume = {5},
number = {3},
pages = {884--895},
year = {2018},
url = {https://doi.org/10.1109/TCSS.2018.2859189},
doi = {10.1109/TCSS.2018.2859189},
timestamp = {Mon, 08 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcss/OzikCWMA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/ZakiWOCBS18,
author = {George F. Zaki and
Justin M. Wozniak and
Jonathan Ozik and
Nicholson T. Collier and
Thomas S. Brettin and
Rick Stevens},
title = {Portable and Reusable Deep Learning Infrastructure with Containers
to Accelerate Cancer Studies},
booktitle = {Proceedings of the 4th International Workshop on Extreme Scale Programming
Models and Middleware, ESPM2@SC 2018, Dallas, Texas, November 11-16,
2018},
pages = {54--61},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/ESPM2.2018.00011},
doi = {10.1109/ESPM2.2018.00011},
timestamp = {Fri, 26 Jul 2019 14:45:32 +0200},
biburl = {https://dblp.org/rec/conf/sc/ZakiWOCBS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/MacalCOTM18,
author = {Charles M. Macal and
Nicholson T. Collier and
Jonathan Ozik and
Eric R. Tatara and
John T. Murphy},
editor = {Bj{\"{o}}rn Johansson and
Sanjay Jain},
title = {Chisim: an Agent-based simulation Model of Social Interactions in
a Large Urban Area},
booktitle = {2018 Winter Simulation Conference, {WSC} 2018, Gothenburg, Sweden,
December 9-12, 2018},
pages = {810--820},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/WSC.2018.8632409},
doi = {10.1109/WSC.2018.8632409},
timestamp = {Wed, 16 Oct 2019 14:14:56 +0200},
biburl = {https://dblp.org/rec/conf/wsc/MacalCOTM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/KaligotlaOCMLAH18,
author = {Chaitanya Kaligotla and
Jonathan Ozik and
Nicholson T. Collier and
Charles M. Macal and
Stacy T. Lindau and
Emily Abramsohn and
Elbert S. Huang},
editor = {Bj{\"{o}}rn Johansson and
Sanjay Jain},
title = {Modeling an Information-based Community Health Intervention on the
South Side of Chicago},
booktitle = {2018 Winter Simulation Conference, {WSC} 2018, Gothenburg, Sweden,
December 9-12, 2018},
pages = {2600--2611},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/WSC.2018.8632525},
doi = {10.1109/WSC.2018.8632525},
timestamp = {Wed, 02 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wsc/KaligotlaOCMLAH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/TataraCOM17,
author = {Eric Tatara and
Nicholson T. Collier and
Jonathan Ozik and
Charles M. Macal},
title = {Endogenous Social Networks from Large-Scale Agent-Based Models},
booktitle = {2017 {IEEE} International Parallel and Distributed Processing Symposium
Workshops, {IPDPS} Workshops 2017, Orlando / Buena Vista, FL, USA,
May 29 - June 2, 2017},
pages = {1492--1499},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/IPDPSW.2017.83},
doi = {10.1109/IPDPSW.2017.83},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/TataraCOM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/WozniakOKW17,
author = {Justin M. Wozniak and
Jonathan Ozik and
Daniel S. Katz and
Michael Wilde},
title = {Streaming supercomputing needs workflow-enabled programming-in-the-large},
journal = {CoRR},
volume = {abs/1702.07425},
year = {2017},
url = {http://arxiv.org/abs/1702.07425},
eprinttype = {arXiv},
eprint = {1702.07425},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/WozniakOKW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/OzikCWS16,
author = {Jonathan Ozik and
Nicholson T. Collier and
Justin M. Wozniak and
Carmine Spagnuolo},
title = {From desktop to Large-Scale Model Exploration with Swift/T},
booktitle = {Winter Simulation Conference, {WSC} 2016, Washington, DC, USA, December
11-14, 2016},
pages = {206--220},
publisher = {{IEEE}},
year = {2016},
url = {https://doi.org/10.1109/WSC.2016.7822090},
doi = {10.1109/WSC.2016.7822090},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wsc/OzikCWS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasss/OzikCCMN15,
author = {Jonathan Ozik and
Nicholson T. Collier and
Todd Combs and
Charles M. Macal and
Michael J. North},
title = {Repast Simphony Statecharts},
journal = {J. Artif. Soc. Soc. Simul.},
volume = {18},
number = {3},
year = {2015},
url = {https://doi.org/10.18564/jasss.2840},
doi = {10.18564/JASSS.2840},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jasss/OzikCCMN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/europar/CollierOM15,
author = {Nicholson T. Collier and
Jonathan Ozik and
Charles M. Macal},
editor = {Sascha Hunold and
Alexandru Costan and
Domingo Gim{\'{e}}nez and
Alexandru Iosup and
Laura Ricci and
Mar{\'{\i}}a Engracia G{\'{o}}mez Requena and
Vittorio Scarano and
Ana Lucia Varbanescu and
Stephen L. Scott and
Stefan Lankes and
Josef Weidendorfer and
Michael Alexander},
title = {Large-Scale Agent-Based Modeling with Repast {HPC:} {A} Case Study
in Parallelizing an Agent-Based Model},
booktitle = {Euro-Par 2015: Parallel Processing Workshops - Euro-Par 2015 International
Workshops, Vienna, Austria, August 24-25, 2015, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {9523},
pages = {454--465},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-27308-2\_37},
doi = {10.1007/978-3-319-27308-2\_37},
timestamp = {Tue, 14 May 2019 10:00:46 +0200},
biburl = {https://dblp.org/rec/conf/europar/CollierOM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/MurphyOCALPKA15,
author = {John T. Murphy and
Jonathan Ozik and
Nicholson T. Collier and
Mark Altaweel and
Richard B. Lammers and
Alexander A. Prusevich and
Andrew D. Kliskey and
Lilian N. Alessa},
title = {Simulating regional hydrology and water management: an integrated
agent-based approach},
booktitle = {Proceedings of the 2015 Winter Simulation Conference, Huntington Beach,
CA, USA, December 6-9, 2015},
pages = {3913--3924},
publisher = {{IEEE/ACM}},
year = {2015},
url = {https://doi.org/10.1109/WSC.2015.7408547},
doi = {10.1109/WSC.2015.7408547},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wsc/MurphyOCALPKA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaaifs/MacalGO14,
author = {Charles M. Macal and
Diane J. Graziano and
Jonathan Ozik},
title = {Modeling Solar {PV} Adoption: {A} Social-Behavioral Agent-Based Framework},
booktitle = {2014 {AAAI} Fall Symposia, Arlington, Virginia, USA, November 13-15,
2014},
publisher = {{AAAI} Press},
year = {2014},
url = {http://www.aaai.org/ocs/index.php/FSS/FSS14/paper/view/9208},
timestamp = {Wed, 14 Nov 2018 17:08:03 +0100},
biburl = {https://dblp.org/rec/conf/aaaifs/MacalGO14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/europar/OzikWCM14,
author = {Jonathan Ozik and
Michael Wilde and
Nicholson T. Collier and
Charles M. Macal},
editor = {Lu{\'{\i}}s M. B. Lopes and
Julius Zilinskas and
Alexandru Costan and
Roberto G. Cascella and
Gabor Kecskemeti and
Emmanuel Jeannot and
Mario Cannataro and
Laura Ricci and
Siegfried Benkner and
Salvador Petit and
Vittorio Scarano and
Jos{\'{e}} Gracia and
Sascha Hunold and
Stephen L. Scott and
Stefan Lankes and
Christian Lengauer and
Jes{\'{u}}s Carretero and
Jens Breitbart and
Michael Alexander},
title = {Adaptive Simulation with Repast Simphony and Swift},
booktitle = {Euro-Par 2014: Parallel Processing Workshops - Euro-Par 2014 International
Workshops, Porto, Portugal, August 25-26, 2014, Revised Selected Papers,
Part {I}},
series = {Lecture Notes in Computer Science},
volume = {8805},
pages = {418--429},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-14325-5\_36},
doi = {10.1007/978-3-319-14325-5\_36},
timestamp = {Sun, 12 Nov 2023 02:07:45 +0100},
biburl = {https://dblp.org/rec/conf/europar/OzikWCM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/OzikCMALPKA14,
author = {Jonathan Ozik and
Nicholson T. Collier and
John T. Murphy and
Mark Altaweel and
Richard B. Lammers and
Alexander A. Prusevich and
Andrew D. Kliskey and
Lilian N. Alessa},
editor = {Stephen J. Buckley and
John A. Miller},
title = {Simulating water, individuals, and management using a coupled and
distributed approach},
booktitle = {Proceedings of the 2014 Winter Simulation Conference, Savannah, GA,
USA, December 7-10, 2014},
pages = {1120--1131},
publisher = {{IEEE/ACM}},
year = {2014},
url = {https://doi.org/10.1109/WSC.2014.7019970},
doi = {10.1109/WSC.2014.7019970},
timestamp = {Thu, 11 Apr 2024 20:25:47 +0200},
biburl = {https://dblp.org/rec/conf/wsc/OzikCMALPKA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/casm/NorthCOTMBS13,
author = {Michael J. North and
Nicholson T. Collier and
Jonathan Ozik and
Eric R. Tatara and
Charles M. Macal and
Mark J. Bragen and
Pam Sydelko},
title = {Complex adaptive systems modeling with Repast Simphony},
journal = {Complex Adapt. Syst. Model.},
volume = {1},
pages = {3},
year = {2013},
url = {https://doi.org/10.1186/2194-3206-1-3},
doi = {10.1186/2194-3206-1-3},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/casm/NorthCOTMBS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/CollierO13,
author = {Nicholson T. Collier and
Jonathan Ozik},
title = {Test-driven agent-based simulation development},
booktitle = {Winter Simulations Conference: Simulation Making Decisions in a Complex
World, {WSC} 2013, Washington, DC, USA, December 8-11, 2013},
pages = {1551--1559},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/WSC.2013.6721538},
doi = {10.1109/WSC.2013.6721538},
timestamp = {Thu, 10 Jun 2021 22:18:53 +0200},
biburl = {https://dblp.org/rec/conf/wsc/CollierO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/OzikCMN13,
author = {Jonathan Ozik and
Nicholson T. Collier and
John T. Murphy and
Michael J. North},
title = {The ReLogo agent-based modeling language},
booktitle = {Winter Simulations Conference: Simulation Making Decisions in a Complex
World, {WSC} 2013, Washington, DC, USA, December 8-11, 2013},
pages = {1560--1568},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/WSC.2013.6721539},
doi = {10.1109/WSC.2013.6721539},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wsc/OzikCMN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaaifs/SallachO09,
author = {David L. Sallach and
Jonathan Ozik},
title = {Data Theory, Discourse Mining and Thresholds},
booktitle = {Complex Adaptive Systems and the Threshold Effect, Papers from the
2009 {AAAI} Fall Symposium, Arlington, Virginia, USA, November 5-7,
2009},
series = {{AAAI} Technical Report},
volume = {{FS-09-03}},
publisher = {{AAAI}},
year = {2009},
url = {http://aaai.org/ocs/index.php/FSS/FSS09/paper/view/994},
timestamp = {Thu, 26 Sep 2013 15:58:37 +0200},
biburl = {https://dblp.org/rec/conf/aaaifs/SallachO09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/OzikSM08,
author = {Jonathan Ozik and
David L. Sallach and
Charles M. Macal},
title = {Modeling Dynamic Multiscale Social Processes in Agent-Based Models},
journal = {{IEEE} Intell. Syst.},
volume = {23},
number = {4},
pages = {36--42},
year = {2008},
url = {https://doi.org/10.1109/MIS.2008.71},
doi = {10.1109/MIS.2008.71},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/expert/OzikSM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wcss/OzikN08,
author = {Jonathan Ozik and
Michael J. North},
editor = {Keiki Takadama and
Claudio Cioffi{-}Revilla and
Guillaume Deffuant},
title = {Modeling Endogenous Coordination Using a Dynamic Language},
booktitle = {Simulating Interacting Agents and Social Phenomena, The Second World
Congress [Post-Conference Proceedings of the World Congress on Social
Simulation, {WCSS} 2008, George Mason University, Fairfax, VA, USA,
14-17 July 2008]},
series = {Agent-Based Social Systems},
volume = {7},
pages = {265--276},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-4-431-99781-8\_19},
doi = {10.1007/978-4-431-99781-8\_19},
timestamp = {Sat, 09 Apr 2022 12:37:42 +0200},
biburl = {https://dblp.org/rec/conf/wcss/OzikN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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