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ORCIDBibTeX records: Sandra E. Orchard
@article{DBLP:journals/biodb/PanniPPDPLHO23,
author = {Simona Panni and
Kalpana Panneerselvam and
Pablo Porras and
Margaret J. Duesbury and
Livia Perfetto and
Luana Licata and
Henning Hermjakob and
Sandra E. Orchard},
title = {The landscape of microRNA interaction annotation: analysis of three
rare disorders as a case study},
journal = {Database J. Biol. Databases Curation},
volume = {2023},
year = {2023},
url = {https://doi.org/10.1093/database/baad066},
doi = {10.1093/DATABASE/BAAD066},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/PanniPPDPLHO23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CoudertGCPBNSRBBAAAABBNB23,
author = {Elisabeth Coudert and
Sebastien Gehant and
Edouard De Castro and
Monica Pozzato and
Delphine Baratin and
Teresa Batista Neto and
Christian J. A. Sigrist and
Nicole Redaschi and
Alan Bridge and
Alan J. Bridge and
Lucila Aimo and
Ghislaine Argoud{-}Puy and
Andrea H. Auchincloss and
Kristian B. Axelsen and
Parit Bansal and
Marie{-}Claude Blatter and
Jerven T. Bolleman and
Emmanuel Boutet and
Lionel Breuza and
Blanca Cabrera Gil and
Cristina Casals{-}Casas and
Kamal Chikh Echioukh and
B{\'{e}}atrice A. Cuche and
Anne Estreicher and
Maria Livia Famiglietti and
Marc Feuermann and
Elisabeth Gasteiger and
Pascale Gaudet and
Vivienne Baillie Gerritsen and
Arnaud Gos and
Nadine Gruaz{-}Gumowski and
Chantal Hulo and
Nevila Hyka{-}Nouspikel and
Florence Jungo and
Arnaud Kerhornou and
Philippe Le Mercier and
Damien Lieberherr and
Patrick Masson and
Anne Morgat and
Venkatesh Muthukrishnan and
Salvo Paesano and
Ivo Pedruzzi and
Sandrine Pilbout and
Lucille Pourcel and
Sylvain Poux and
Manuela Pruess and
Catherine Rivoire and
Karin Sonesson and
Shyamala Sundaram and
Alex Bateman and
Maria Jesus Martin and
Sandra E. Orchard and
Michele Magrane and
Shadab Ahmad and
Emanuele Alpi and
Emily H. Bowler{-}Barnett and
Ramona Britto and
Hema Bye{-}A{-}Jee and
Austra Cukura and
Paul Denny and
Tunca Dogan and
Thankgod Ebenezer and
Jun Fan and
Penelope Garmiri and
Leonardo Jose da Costa Gonzales and
Emma Hatton{-}Ellis and
Abdulrahman Hussein and
Alexandr Ignatchenko and
Giuseppe Insana and
Rizwan Ishtiaq and
Vishal Joshi and
Dushyanth Jyothi and
Swaathi Kandasamy and
Antonia Lock and
Aurelien Luciani and
Marija Lugaric and
Jie Luo and
Yvonne Lussi and
Alistair MacDougall and
F{\'{a}}bio Madeira and
Mahdi Mahmoudy and
Alok Mishra and
Katie Moulang and
Andrew Nightingale and
Sangya Pundir and
Guoying Qi and
Shriya Raj and
Pedro Raposo and
Daniel Rice and
Rabie Saidi and
Rafael Santos and
Elena Speretta and
James D. Stephenson and
Prabhat Totoo and
Edward Turner and
Nidhi Tyagi and
Preethi Vasudev and
Kate Warner and
Xavier Watkins and
Rossana Zaru and
Hermann Zellner and
Cathy H. Wu and
Cecilia N. Arighi and
Leslie Arminski and
Chuming Chen and
Yongxing Chen and
Hongzhan Huang and
Kati Laiho and
Peter B. McGarvey and
Darren A. Natale and
Karen Ross and
C. R. Vinayaka and
Qinghua Wang and
Yuqi Wang},
title = {Annotation of biologically relevant ligands in UniProtKB using ChEBI},
journal = {Bioinform.},
volume = {39},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btac793},
doi = {10.1093/BIOINFORMATICS/BTAC793},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CoudertGCPBNSRBBAAAABBNB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ThakurBBFHHKKLLMMOPVVWZM23,
author = {Matthew Thakur and
Alex Bateman and
Cath Brooksbank and
Mallory Ann Freeberg and
Melissa Harrison and
Matthew Hartley and
Thomas M. Keane and
Gerard J. Kleywegt and
Andrew Leach and
Maria Levchenko and
Sarah L. Morgan and
Ellen M. McDonagh and
Sandra E. Orchard and
Irene Papatheodorou and
Sameer Velankar and
Juan Antonio Vizca{\'{\i}}no and
Rick Witham and
Barbara Zdrazil and
Johanna R. McEntyre},
title = {EMBL's European Bioinformatics Institute {(EMBL-EBI)} in 2022},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{D1}},
pages = {9--17},
year = {2023},
url = {https://doi.org/10.1093/nar/gkac1098},
doi = {10.1093/NAR/GKAC1098},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ThakurBBFHHKKLLMMOPVVWZM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MeldalPCLCBWdSB22,
author = {Birgit H. M. Meldal and
Livia Perfetto and
Colin W. Combe and
Tiago Lubiana and
Jo{\~{a}}o Vitor Ferreira Cavalcante and
Hema Bye{-}A{-}Jee and
Andra Waagmeester and
Noemi del{-}Toro and
Anjali Shrivastava and
Elisabet Barrera and
Edith D. Wong and
Bernhard Mlecnik and
Gabriela Bindea and
Kalpana Panneerselvam and
Egon L. Willighagen and
Juri Rappsilber and
Pablo Porras and
Henning Hermjakob and
Sandra E. Orchard},
title = {Complex Portal 2022: new curation frontiers},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {578--586},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab991},
doi = {10.1093/NAR/GKAB991},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MeldalPCLCBWdSB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/del-ToroSRMCBPH22,
author = {Noemi del{-}Toro and
Anjali Shrivastava and
Eliot Ragueneau and
Birgit Meldal and
Colin W. Combe and
Elisabet Barrera and
Livia Perfetto and
Karyn How and
Prashansa Ratan and
Gautam Shirodkar and
Odilia Lu and
B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and
Xavier Watkins and
Sangya Pundir and
Luana Licata and
Marta Iannuccelli and
Matteo Pellegrini and
Maria Jesus Martin and
Simona Panni and
Margaret J. Duesbury and
Sylvain D. Vallet and
Juri Rappsilber and
Sylvie Ricard{-}Blum and
Gianni Cesareni and
Lukasz Salw{\'{\i}}nski and
Sandra E. Orchard and
Pablo Porras and
Kalpana Panneerselvam and
Henning Hermjakob},
title = {The IntAct database: efficient access to fine-grained molecular interaction
data},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {648--653},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1006},
doi = {10.1093/NAR/GKAB1006},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/del-ToroSRMCBPH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SaverimuttuKRGA21,
author = {Shirin C. C. Saverimuttu and
Barbara Kramarz and
Milagros Rodr{\'{\i}}guez{-}L{\'{o}}pez and
Penelope Garmiri and
Helen Attrill and
Katherine E. Thurlow and
Marios Makris and
Sandra M. Pinheiro and
Sandra E. Orchard and
Ruth C. Lovering},
title = {Gene Ontology curation of the blood-brain barrier to improve the analysis
of Alzheimer's and other neurological diseases},
journal = {Database J. Biol. Databases Curation},
volume = {2021},
year = {2021},
url = {https://doi.org/10.1093/database/baab067},
doi = {10.1093/DATABASE/BAAB067},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/SaverimuttuKRGA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MacDougallVSPZH21,
author = {Alistair MacDougall and
Vladimir Volynkin and
Rabie Saidi and
Diego Poggioli and
Hermann Zellner and
Emma Hatton{-}Ellis and
Vishal Joshi and
Claire O'Donovan and
Sandra E. Orchard and
Andrea H. Auchincloss and
Delphine Baratin and
Jerven T. Bolleman and
Elisabeth Coudert and
Edouard De Castro and
Chantal Hulo and
Patrick Masson and
Ivo Pedruzzi and
Catherine Rivoire and
Cecilia N. Arighi and
Qinghua Wang and
Chuming Chen and
Hongzhan Huang and
John Garavelli and
C. R. Vinayaka and
Lai{-}Su Yeh and
Darren A. Natale and
Kati Laiho and
Maria Jesus Martin and
Alexandre Renaux and
Klemens Pichler},
title = {UniRule: a unified rule resource for automatic annotation in the UniProt
Knowledgebase},
journal = {Bioinform.},
volume = {36},
number = {22-23},
pages = {5562},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa663},
doi = {10.1093/BIOINFORMATICS/BTAA663},
timestamp = {Wed, 10 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MacDougallVSPZH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ToureVALOBCCdFG21,
author = {Vasundra Tour{\'{e}} and
Steven Vercruysse and
Marcio Luis Acencio and
Ruth C. Lovering and
Sandra E. Orchard and
Glyn Bradley and
Cristina Casals{-}Casas and
Claudine Chaouiya and
Noemi del{-}Toro and
{\AA}smund Flobak and
Pascale Gaudet and
Henning Hermjakob and
Charles Tapley Hoyt and
Luana Licata and
Astrid L{\ae}greid and
Christopher J. Mungall and
Anne Niknejad and
Simona Panni and
Livia Perfetto and
Pablo Porras and
Dexter Pratt and
Julio Saez{-}Rodriguez and
Denis Thieffry and
Paul D. Thomas and
D{\'{e}}nes T{\"{u}}rei and
Martin Kuiper},
title = {The Minimum Information about a Molecular Interaction CAusal STatement
{(MI2CAST)}},
journal = {Bioinform.},
volume = {36},
number = {24},
pages = {5712--5718},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa622},
doi = {10.1093/BIOINFORMATICS/BTAA622},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ToureVALOBCCdFG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CarbonDGUHMBCDH21,
author = {Seth Carbon and
Eric Douglass and
Benjamin M. Good and
Deepak R. Unni and
Nomi L. Harris and
Christopher J. Mungall and
Siddartha Basu and
Rex L. Chisholm and
Robert J. Dodson and
Eric Hartline and
Petra Fey and
Paul D. Thomas and
Laurent{-}Philippe Albou and
Dustin Ebert and
Michael J. Kesling and
Huaiyu Mi and
Anushya Muruganujan and
Xiaosong Huang and
Tremayne Mushayahama and
Sandra A. LaBonte and
Deborah A. Siegele and
Giulia Antonazzo and
Helen Attrill and
Nick H. Brown and
Phani V. Garapati and
Steven J. Marygold and
Vitor Trovisco and
Gilberto dos Santos and
Kathleen Falls and
Christopher J. Tabone and
Pinglei Zhou and
Joshua L. Goodman and
Victor B. Strelets and
Jim Thurmond and
Penelope Garmiri and
Rizwan Ishtiaq and
Milagros Rodr{\'{\i}}guez{-}L{\'{o}}pez and
Marcio Luis Acencio and
Martin Kuiper and
Astrid L{\ae}greid and
Colin Logie and
Ruth C. Lovering and
Barbara Kramarz and
Shirin C. C. Saverimuttu and
Sandra M. Pinheiro and
Heather Gunn and
Renzhi Su and
Katherine E. Thurlow and
Marcus C. Chibucos and
Michelle G. Giglio and
Suvarna Nadendla and
James B. Munro and
Rebecca C. Jackson and
Margaret J. Duesbury and
Noemi del{-}Toro and
Birgit H. M. Meldal and
Kalpana Paneerselvam and
Livia Perfetto and
Pablo Porras and
Sandra E. Orchard and
Anjali Shrivastava and
Hsin{-}Yu Chang and
Robert D. Finn and
Alex L. Mitchell and
Neil D. Rawlings and
Lorna J. Richardson and
Amaia Sangrador{-}Vegas and
Judith A. Blake and
Karen R. Christie and
Mary E. Dolan and
Harold J. Drabkin and
David P. Hill and
Li Ni and
Dmitry M. Sitnikov and
Midori A. Harris and
Stephen G. Oliver and
Kim Rutherford and
Valerie Wood and
Jaqueline Hayles and
J{\"{u}}rg B{\"{a}}hler and
Elizabeth R. Bolton and
Jeffrey DePons and
Melinda R. Dwinell and
G. Thomas Hayman and
Mary L. Kaldunski and
Anne E. Kwitek and
Stanley J. F. Laulederkind and
Cody Plasterer and
Marek Tutaj and
Mahima Vedi and
Shur{-}Jen Wang and
Peter D'Eustachio and
Lisa Matthews and
James P. Balhoff and
Suzi A. Aleksander and
Michael J. Alexander and
J. Michael Cherry and
Stacia R. Engel and
Felix Gondwe and
Kalpana Karra and
Stuart R. Miyasato and
Robert S. Nash and
Matt Simison and
Marek S. Skrzypek and
Shuai Weng and
Edith D. Wong and
Marc Feuermann and
Pascale Gaudet and
Anne Morgat and
Erica Bakker and
Tanya Z. Berardini and
Leonore Reiser and
Shabari Subramaniam and
Eva Huala and
Cecilia N. Arighi and
Andrea H. Auchincloss and
Kristian B. Axelsen and
Ghislaine Argoud{-}Puy and
Alex Bateman and
Marie{-}Claude Blatter and
Emmanuel Boutet and
Emily Bowler and
Lionel Breuza and
Alan J. Bridge and
Ramona Britto and
Hema Bye{-}A{-}Jee and
Cristina Casals{-}Casas and
Elisabeth Coudert and
Paul Denny and
Anne Estreicher and
Maria Livia Famiglietti and
George E. Georghiou and
Arnaud Gos and
Nadine Gruaz{-}Gumowski and
Emma Hatton{-}Ellis and
Chantal Hulo and
Alexandr Ignatchenko and
Florence Jungo and
Kati Laiho and
Philippe Le Mercier and
Damien Lieberherr and
Antonia Lock and
Yvonne Lussi and
Alistair MacDougall and
Michele Magrane and
Maria Jesus Martin and
Patrick Masson and
Darren A. Natale and
Nevila Hyka{-}Nouspikel and
Ivo Pedruzzi and
Lucille Pourcel and
Sylvain Poux and
Sangya Pundir and
Catherine Rivoire and
Elena Speretta and
Shyamala Sundaram and
Nidhi Tyagi and
Kate Warner and
Rossana Zaru and
Cathy H. Wu and
Alexander D. Diehl and
Juancarlos Chan and
Christian A. Grove and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Daniela Raciti and
Kimberly Van Auken and
Paul W. Sternberg and
Matthew Berriman and
Michael Paulini and
Kevin L. Howe and
Sibyl Gao and
Adam Wright and
Lincoln Stein and
Douglas G. Howe and
Sabrina Toro and
Monte Westerfield and
Pankaj Jaiswal and
Laurel Cooper and
Justin Elser},
title = {The Gene Ontology resource: enriching a GOld mine},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D325--D334},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1113},
doi = {10.1093/NAR/GKAA1113},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/CarbonDGUHMBCDH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BatemanMOMAAABB21,
author = {Alex Bateman and
Maria Jesus Martin and
Sandra E. Orchard and
Michele Magrane and
Rahat Agivetova and
Shadab Ahmad and
Emanuele Alpi and
Emily H. Bowler{-}Barnett and
Ramona Britto and
Borisas Bursteinas and
Hema Bye{-}A{-}Jee and
Ray Coetzee and
Austra Cukura and
Alan W. Sousa da Silva and
Paul Denny and
Tunca Dogan and
Thankgod Ebenezer and
Jun Fan and
Leyla Jael Garc{\'{\i}}a Castro and
Penelope Garmiri and
George E. Georghiou and
Leonardo Gonzales and
Emma Hatton{-}Ellis and
Abdulrahman Hussein and
Alexandr Ignatchenko and
Giuseppe Insana and
Rizwan Ishtiaq and
Petteri Jokinen and
Vishal Joshi and
Dushyanth Jyothi and
Antonia Lock and
Rodrigo Lopez and
Aurelien Luciani and
Jie Luo and
Yvonne Lussi and
Alistair MacDougall and
F{\'{a}}bio Madeira and
Mahdi Mahmoudy and
Manuela Menchi and
Alok Mishra and
Katie Moulang and
Andrew Nightingale and
Carla Susana Oliveira and
Sangya Pundir and
Guoying Qi and
Shriya Raj and
Daniel Rice and
Milagros Rodr{\'{\i}}guez{-}L{\'{o}}pez and
Rabie Saidi and
Joseph Sampson and
Tony Sawford and
Elena Speretta and
Edward Turner and
Nidhi Tyagi and
Preethi Vasudev and
Vladimir Volynkin and
Kate Warner and
Xavier Watkins and
Rossana Zaru and
Hermann Zellner and
Alan J. Bridge and
Sylvain Poux and
Nicole Redaschi and
Lucila Aimo and
Ghislaine Argoud{-}Puy and
Andrea H. Auchincloss and
Kristian B. Axelsen and
Parit Bansal and
Delphine Baratin and
Marie{-}Claude Blatter and
Jerven T. Bolleman and
Emmanuel Boutet and
Lionel Breuza and
Cristina Casals{-}Casas and
Edouard De Castro and
Kamal Chikh Echioukh and
Elisabeth Coudert and
B{\'{e}}atrice A. Cuche and
Mikael Doche and
Dolnide Dornevil and
Anne Estreicher and
Maria Livia Famiglietti and
Marc Feuermann and
Elisabeth Gasteiger and
Sebastien Gehant and
Vivienne Baillie Gerritsen and
Arnaud Gos and
Nadine Gruaz{-}Gumowski and
Ursula Hinz and
Chantal Hulo and
Nevila Hyka{-}Nouspikel and
Florence Jungo and
Guillaume Keller and
Arnaud Kerhornou and
Vicente Lara and
Philippe Le Mercier and
Damien Lieberherr and
Thierry Lombardot and
Xavier Martin and
Patrick Masson and
Anne Morgat and
Teresa Batista Neto and
Salvo Paesano and
Ivo Pedruzzi and
Sandrine Pilbout and
Lucille Pourcel and
Monica Pozzato and
Manuela Pruess and
Catherine Rivoire and
Christian J. A. Sigrist and
Karin Sonesson and
Andre Stutz and
Shyamala Sundaram and
Michael Tognolli and
Laure Verbregue and
Cathy H. Wu and
Cecilia N. Arighi and
Leslie Arminski and
Chuming Chen and
Yongxing Chen and
John S. Garavelli and
Hongzhan Huang and
Kati Laiho and
Peter B. McGarvey and
Darren A. Natale and
Karen Ross and
C. R. Vinayaka and
Qinghua Wang and
Yuqi Wang and
Lai{-}Su Yeh and
Jian Zhang and
Patrick Ruch and
Douglas Teodoro},
title = {UniProt: the universal protein knowledgebase in 2021},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D480--D489},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1100},
doi = {10.1093/NAR/GKAA1100},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BatemanMOMAAABB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/PerfettoPdDIKLM20,
author = {Livia Perfetto and
Chiara Pastrello and
Noemi del{-}Toro and
Margaret J. Duesbury and
Marta Iannuccelli and
Max Kotlyar and
Luana Licata and
Birgit Meldal and
Kalpana Panneerselvam and
Simona Panni and
N. Rahimzadeh and
Sylvie Ricard{-}Blum and
Lukasz Salw{\'{\i}}nski and
Anjali Shrivastava and
Gianni Cesareni and
Matteo Pellegrini and
Sandra E. Orchard and
Igor Jurisica and
Henning Hermjakob and
Pablo Porras},
title = {The IMEx coronavirus interactome: an evolving map of Coronaviridae-host
molecular interactions},
journal = {Database J. Biol. Databases Curation},
volume = {2020},
year = {2020},
url = {https://doi.org/10.1093/database/baaa096},
doi = {10.1093/DATABASE/BAAA096},
timestamp = {Sun, 04 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/PerfettoPdDIKLM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DrysdaleCPGBGGH20,
author = {Rachel Drysdale and
Charles E. Cook and
Robert Petryszak and
Vivienne Baillie Gerritsen and
Mary Barlow and
Elisabeth Gasteiger and
Franziska Gruhl and
J{\"{u}}rgen Haas and
Jerry Lanfear and
Rodrigo Lopez and
Nicole Redaschi and
Heinz Stockinger and
Daniel Teixeira and
Aravind Venkatesan and
Alex Bateman and
Alan J. Bridge and
Guy Cochrane and
Robert D. Finn and
Frank Oliver Gl{\"{o}}ckner and
Marc Hanauer and
Thomas M. Keane and
Andrew Leach and
Luana Licata and
Per Oksvold and
Sandra E. Orchard and
Christine A. Orengo and
Helen E. Parkinson and
Bengt Persson and
Pablo Porras and
Jordi Rambla and
Ana Rath and
Charlotte Rodwell and
Ugis Sarkans and
Dietmar Schomburg and
Ian Sillitoe and
J. Dylan Spalding and
Mathias Uhl{\'{e}}n and
Sameer Velankar and
Juan Antonio Vizca{\'{\i}}no and
Kalle von Feilitzen and
Christian von Mering and
Andrew D. Yates and
Niklas Blomberg and
Christine Durinx and
Johanna R. McEntyre},
title = {The {ELIXIR} Core Data Resources: fundamental infrastructure for the
life sciences},
journal = {Bioinform.},
volume = {36},
number = {8},
pages = {2636--2642},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz959},
doi = {10.1093/BIOINFORMATICS/BTZ959},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DrysdaleCPGBGGH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WongSWBMPOECP19,
author = {Edith D. Wong and
Marek S. Skrzypek and
Shuai Weng and
Gail Binkley and
Birgit H. M. Meldal and
Livia Perfetto and
Sandra E. Orchard and
Stacia R. Engel and
J. Michael Cherry and
SGD Project},
title = {Integration of macromolecular complex data into the Saccharomyces
Genome Database},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz008},
year = {2019},
url = {https://doi.org/10.1093/database/baz008},
doi = {10.1093/DATABASE/BAZ008},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WongSWBMPOECP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PerfettoABCdFHK19,
author = {Livia Perfetto and
Marcio Luis Acencio and
Glyn Bradley and
Gianni Cesareni and
Noemi del{-}Toro and
D{\'{a}}vid Fazekas and
Henning Hermjakob and
Tam{\'{a}}s Korcsm{\'{a}}ros and
Martin Kuiper and
Astrid L{\ae}greid and
Prisca Lo Surdo and
Ruth C. Lovering and
Sandra E. Orchard and
Pablo Porras and
Paul D. Thomas and
Vasundra Tour{\'{e}} and
John Zobolas and
Luana Licata},
title = {CausalTAB: the {PSI-MITAB} 2.8 updated format for signalling data
representation and dissemination},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3779--3785},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz132},
doi = {10.1093/BIOINFORMATICS/BTZ132},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PerfettoABCdFHK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MeldalBGHHMPPLT19,
author = {Birgit H. M. Meldal and
Hema Bye{-}A{-}Jee and
Luk{\'{a}}s Gajdos and
Zuzana Hammerov{\'{a}} and
Aneta Hor{\'{a}}ckov{\'{a}} and
Filip Melicher and
Livia Perfetto and
Daniel Pokorn{\'{y}} and
Milagros Rodr{\'{\i}}guez{-}L{\'{o}}pez and
Alzbeta T{\"{u}}rkov{\'{a}} and
Edith D. Wong and
Zengyan Xie and
Elisabeth Barrera Casanova and
Noemi del{-}Toro and
Maximilian Koch and
Pablo Porras and
Henning Hermjakob and
Sandra E. Orchard},
title = {Complex Portal 2018: extended content and enhanced visualization tools
for macromolecular complexes},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D550--D558},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1001},
doi = {10.1093/NAR/GKY1001},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MeldalBGHHMPPLT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DumousseauKSARd18,
author = {M. Sivade Dumousseau and
Maximilian Koch and
Anjali Shrivastava and
Diego Alonso{-}L{\'{o}}pez and
Javier De Las Rivas and
Noemi del{-}Toro and
Colin W. Combe and
Birgit H. M. Meldal and
Joshua Heimbach and
Juri Rappsilber and
Julie M. Sullivan and
Yo Yehudi and
Sandra E. Orchard},
title = {{JAMI:} a Java library for molecular interactions and data interoperability},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {133:1--133:9},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2119-0},
doi = {10.1186/S12859-018-2119-0},
timestamp = {Mon, 19 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DumousseauKSARd18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DumousseauAABCC18,
author = {M. Sivade Dumousseau and
Diego Alonso{-}L{\'{o}}pez and
Mais G. Ammari and
Glyn Bradley and
Nancy H. Campbell and
Arnaud C{\'{e}}ol and
Gianni Cesareni and
Colin W. Combe and
Javier De Las Rivas and
Noemi del{-}Toro and
Joshua Heimbach and
Henning Hermjakob and
Igor Jurisica and
Maximilian Koch and
Luana Licata and
Ruth C. Lovering and
David J. Lynn and
Birgit H. M. Meldal and
Gos Micklem and
Simona Panni and
Pablo Porras and
Sylvie Ricard{-}Blum and
Bernd Roechert and
Lukasz Salw{\'{\i}}nski and
Anjali Shrivastava and
Julie M. Sullivan and
Nicolas Thierry{-}Mieg and
Yo Yehudi and
Kim Van Roey and
Sandra E. Orchard},
title = {Encompassing new use cases - level 3.0 of the {HUPO-PSI} format for
molecular interactions},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {134:1--134:8},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2118-1},
doi = {10.1186/S12859-018-2118-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DumousseauAABCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CombeSHHMMOR17,
author = {Colin W. Combe and
Marine Sivade and
Henning Hermjakob and
Joshua Heimbach and
Birgit H. M. Meldal and
Gos Micklem and
Sandra E. Orchard and
Juri Rappsilber},
title = {ComplexViewer: visualization of curated macromolecular complexes},
journal = {Bioinform.},
volume = {33},
number = {22},
pages = {3673--3675},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx497},
doi = {10.1093/BIOINFORMATICS/BTX497},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CombeSHHMMOR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/GriffinKLLOPPRR17,
author = {Philippa C. Griffin and
Jyoti Khadake and
Kate S. LeMay and
Suzanna E. Lewis and
Sandra E. Orchard and
Andrew Pask and
Bernard J. Pope and
Ute Roessner and
Keith Russell and
Torsten Seemann and
Andrew E. Treloar and
Sonika Tyagi and
Jeffrey H. Christiansen and
Saravanan Dayalan and
Simon Gladman and
Sandra B. Hangartner and
Helen L. Hayden and
William W. H. Ho and
Gabriel Keeble{-}Gagn{\`{e}}re and
Pasi K. Korhonen and
Peter Neish and
Priscilla R. Prestes and
Mark F. Richardson and
Nathan S. Watson{-}Haigh and
Kelly L. Wyres and
Neil D. Young and
Maria Victoria Schneider},
title = {Best practice data life cycle approaches for the life sciences},
journal = {F1000Research},
volume = {6},
pages = {1618},
year = {2017},
url = {https://doi.org/10.12688/f1000research.12344.1},
doi = {10.12688/F1000RESEARCH.12344.1},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/GriffinKLLOPPRR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/TripathiVCCBHOH16,
author = {Sushil Tripathi and
Steven Vercruysse and
Konika Chawla and
Karen R. Christie and
Judith A. Blake and
Rachael P. Huntley and
Sandra E. Orchard and
Henning Hermjakob and
Liv Thommesen and
Astrid L{\ae}greid and
Martin Kuiper},
title = {Gene regulation knowledge commons: community action takes care of
{DNA} binding transcription factors},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw088},
doi = {10.1093/DATABASE/BAW088},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/TripathiVCCBHOH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WangAAABBCCCCCD16,
author = {Qinghua Wang and
Shabbir S. Abdul and
Lara Almeida and
Sophia Ananiadou and
Yalbi I. Balderas{-}Mart{\'{\i}}nez and
Riza Batista{-}Navarro and
David Campos and
Lucy Chilton and
Hui{-}Jou Chou and
Gabriela Contreras and
Laurel Cooper and
Hong{-}Jie Dai and
Barbra Ferrell and
Juliane Fluck and
Socorro Gama{-}Castro and
Nancy George and
Georgios V. Gkoutos and
Afroza Khanam Irin and
Lars Juhl Jensen and
Silvia Jimenez and
Toni Rose Jue and
Ingrid M. Keseler and
Sumit Madan and
S{\'{e}}rgio Matos and
Peter McQuilton and
Marija Milacic and
Matthew E. Mort and
Jeyakumar Natarajan and
Evangelos Pafilis and
Emiliano Pereira and
Shruti Rao and
Fabio Rinaldi and
Karen Rothfels and
David Salgado and
Raquel M. Silva and
Onkar Singh and
Raymund Stefancsik and
Chu{-}Hsien Su and
Suresh Subramani and
Hamsa D. Tadepally and
Loukia Tsaprouni and
Nicole A. Vasilevsky and
Xiaodong Wang and
Andrew Chatr{-}aryamontri and
Stanley J. F. Laulederkind and
Sherri Matis{-}Mitchell and
Johanna R. McEntyre and
Sandra E. Orchard and
Sangya Pundir and
Raul Rodriguez{-}Esteban and
Kimberly Van Auken and
Zhiyong Lu and
Mary L. Schaeffer and
Cathy H. Wu and
Lynette Hirschman and
Cecilia N. Arighi},
title = {Overview of the interactive task in BioCreative {V}},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw119},
doi = {10.1093/DATABASE/BAW119},
timestamp = {Wed, 10 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/WangAAABBCCCCCD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/BastianCGGHHLNO15,
author = {Frederic B. Bastian and
Marcus C. Chibucos and
Pascale Gaudet and
Michelle G. Giglio and
Gemma L. Holliday and
Hong Huang and
Suzanna E. Lewis and
Anne Niknejad and
Sandra E. Orchard and
Sylvain Poux and
Nives Skunca and
Marc Robinson{-}Rechavi},
title = {The Confidence Information Ontology: a step towards a standard for
asserting confidence in annotations},
journal = {Database J. Biol. Databases Curation},
volume = {2015},
year = {2015},
url = {https://doi.org/10.1093/database/bav043},
doi = {10.1093/DATABASE/BAV043},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/BastianCGGHHLNO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/OrchardH15,
author = {Sandra E. Orchard and
Henning Hermjakob},
title = {Shared resources, shared costs - leveraging biocuration resources},
journal = {Database J. Biol. Databases Curation},
volume = {2015},
year = {2015},
url = {https://doi.org/10.1093/database/bav009},
doi = {10.1093/DATABASE/BAV009},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/OrchardH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/VillavecesJPdDD15,
author = {Jose M. Villaveces and
Rafael C. Jim{\'{e}}nez and
Pablo Porras and
Noemi del{-}Toro and
Margaret J. Duesbury and
Marine Dumousseau and
Sandra E. Orchard and
H. Choi and
Peipei Ping and
N. C. Zong and
Manor Askenazi and
Bianca Habermann and
Henning Hermjakob},
title = {Merging and scoring molecular interactions utilising existing community
standards: tools, use-cases and a case study},
journal = {Database J. Biol. Databases Curation},
volume = {2015},
year = {2015},
url = {https://doi.org/10.1093/database/bau131},
doi = {10.1093/DATABASE/BAU131},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/VillavecesJPdDD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/DeutschABEJMOOV15,
author = {Eric W. Deutsch and
Juan P. Albar and
Pierre{-}Alain Binz and
Martin Eisenacher and
Andrew R. Jones and
Gerhard Mayer and
Gilbert S. Omenn and
Sandra E. Orchard and
Juan Antonio Vizca{\'{\i}}no and
Henning Hermjakob},
title = {Development of data representation standards by the human proteome
organization proteomics standards initiative},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {3},
pages = {495--506},
year = {2015},
url = {https://doi.org/10.1093/jamia/ocv001},
doi = {10.1093/JAMIA/OCV001},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/DeutschABEJMOOV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MeldalFCDDDDGLMRRSTVWHO15,
author = {Birgit H. M. Meldal and
Oscar Forner{-}Martinez and
Maria C. Costanzo and
Jose M. Dana and
Janos Demeter and
Marine Dumousseau and
Selina S. Dwight and
Anna Gaulton and
Luana Licata and
Anna N. Melidoni and
Sylvie Ricard{-}Blum and
Bernd Roechert and
Marek S. Skrzypek and
Manu Tiwari and
Sameer Velankar and
Edith D. Wong and
Henning Hermjakob and
Sandra E. Orchard},
title = {The complex portal - an encyclopaedia of macromolecular complexes},
journal = {Nucleic Acids Res.},
volume = {43},
number = {Database-Issue},
pages = {479--484},
year = {2015},
url = {https://doi.org/10.1093/nar/gku975},
doi = {10.1093/NAR/GKU975},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MeldalFCDDDDGLMRRSTVWHO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OrchardAABBBCCCdDDGHIJJKLLLMMMPPPRRRSTRCH14,
author = {Sandra E. Orchard and
Mais G. Ammari and
Bruno Aranda and
Lionel Breuza and
Leonardo Briganti and
Fiona Broackes{-}Carter and
Nancy H. Campbell and
Gayatri Chavali and
Carol Chen and
Noemi del{-}Toro and
Margaret J. Duesbury and
Marine Dumousseau and
Eugenia Galeota and
Ursula Hinz and
Marta Iannuccelli and
Sruthi Jagannathan and
Rafael C. Jim{\'{e}}nez and
Jyoti Khadake and
Astrid L{\ae}greid and
Luana Licata and
Ruth C. Lovering and
Birgit Meldal and
Anna N. Melidoni and
Mila Milagros and
Daniele Peluso and
Livia Perfetto and
Pablo Porras and
Arathi Raghunath and
Sylvie Ricard{-}Blum and
Bernd Roechert and
Andre Stutz and
Michael Tognolli and
Kim Van Roey and
Gianni Cesareni and
Henning Hermjakob},
title = {The MIntAct project - IntAct as a common curation platform for 11
molecular interaction databases},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {358--363},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1115},
doi = {10.1093/NAR/GKT1115},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OrchardAABBBCCCdDDGHIJJKLLLMMMPPPRRRSTRCH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MayerMOJBDCKLSOVHSME13,
author = {Gerhard Mayer and
Luisa Montecchi{-}Palazzi and
David Ovelleiro and
Andrew R. Jones and
Pierre{-}Alain Binz and
Eric W. Deutsch and
Matthew Chambers and
Marius Kallhardt and
Fredrik Levander and
James Shofstahl and
Sandra E. Orchard and
Juan Antonio Vizca{\'{\i}}no and
Henning Hermjakob and
Christian Stephan and
Helmut E. Meyer and
Martin Eisenacher},
title = {The {HUPO} proteomics standards initiative- mass spectrometry controlled
vocabulary},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bat009},
doi = {10.1093/DATABASE/BAT009},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/MayerMOJBDCKLSOVHSME13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RoeyOKDRHG13,
author = {Kim Van Roey and
Sandra E. Orchard and
Samuel Kerrien and
Marine Dumousseau and
Sylvie Ricard{-}Blum and
Henning Hermjakob and
Toby J. Gibson},
title = {Capturing cooperative interactions with the {PSI-MI} format},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bat066},
doi = {10.1093/DATABASE/BAT066},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/RoeyOKDRHG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GomezGSVGGMLAdDOVHZPCJ13,
author = {John G{\'{o}}mez and
Leyla J. Garc{\'{\i}}a and
Gustavo A. Salazar and
Jose M. Villaveces and
Swanand P. Gore and
Alexander Garc{\'{\i}}a Castro and
Maria Jesus Martin and
Guillaume Launay and
Rafael Alc{\'{a}}ntara and
Noemi del{-}Toro and
Marine Dumousseau and
Sandra E. Orchard and
Sameer Velankar and
Henning Hermjakob and
Chenggong Zong and
Peipei Ping and
Manuel Corpas and
Rafael C. Jim{\'{e}}nez},
title = {BioJS: an open source JavaScript framework for biological data visualization},
journal = {Bioinform.},
volume = {29},
number = {8},
pages = {1103--1104},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt100},
doi = {10.1093/BIOINFORMATICS/BTT100},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GomezGSVGGMLAdDOVHZPCJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/del-ToroDOJGLGBOSH13,
author = {Noemi del{-}Toro and
Marine Dumousseau and
Sandra E. Orchard and
Rafael C. Jim{\'{e}}nez and
Eugenia Galeota and
Guillaume Launay and
Johannes Goll and
Karin Breuer and
Keiichiro Ono and
Lukasz Salw{\'{\i}}nski and
Henning Hermjakob},
title = {A new reference implementation of the {PSICQUIC} web service},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {601--606},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt392},
doi = {10.1093/NAR/GKT392},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/del-ToroDOJGLGBOSH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwbbio/PorrasRDLHODKH13,
author = {Pablo Porras and
Paola Roncaglia and
Emily Dimmer and
Jane Lomax and
Rachael P. Huntley and
Sandra E. Orchard and
Marine Dumousseau and
Samuel Kerrien and
Henning Hermjakob},
editor = {Ignacio Rojas and
Francisco M. Ortu{\~{n}}o Guzman},
title = {The Apoptosis Gene Ontology project and the IntAct-Apoptosis dataset:
updating the conceptual representation of apoptosis},
booktitle = {International Work-Conference on Bioinformatics and Biomedical Engineering,
{IWBBIO} 2013, Granada, Spain, March 18-20, 2013. Proceedings},
pages = {757--758},
publisher = {Copicentro Editorial},
year = {2013},
url = {http://iwbbio.ugr.es/papers/iwbbio\_120.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iwbbio/PorrasRDLHODKH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KerrienABBBCDDFHJJKMMPPPRROH12,
author = {Samuel Kerrien and
Bruno Aranda and
Lionel Breuza and
Alan J. Bridge and
Fiona Broackes{-}Carter and
Carol Chen and
Margaret J. Duesbury and
Marine Dumousseau and
Marc Feuermann and
Ursula Hinz and
Christine Jandrasits and
Rafael C. Jim{\'{e}}nez and
Jyoti Khadake and
Usha Mahadevan and
Patrick Masson and
Ivo Pedruzzi and
Eric Pfeiffenberger and
Pablo Porras and
Arathi Raghunath and
Bernd Roechert and
Sandra E. Orchard and
Henning Hermjakob},
title = {The IntAct molecular interaction database in 2012},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {841--846},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr1088},
doi = {10.1093/NAR/GKR1088},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KerrienABBBCDDFHJJKMMPPPRROH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11,
author = {Pascale Gaudet and
Amos Bairoch and
Dawn Field and
Susanna{-}Assunta Sansone and
Chris F. Taylor and
Teresa K. Attwood and
Alex Bateman and
Judith A. Blake and
Carol J. Bult and
J. Michael Cherry and
Rex L. Chisholm and
Guy Cochrane and
Charles E. Cook and
Janan T. Eppig and
Michael Y. Galperin and
Robert Gentleman and
Carole A. Goble and
Takashi Gojobori and
John M. Hancock and
Douglas G. Howe and
Tadashi Imanishi and
Janet Kelso and
David Landsman and
Suzanna E. Lewis and
Ilene Karsch{-}Mizrachi and
Sandra E. Orchard and
B. F. Francis Ouellette and
Shoba Ranganathan and
Lorna J. Richardson and
Philippe Rocca{-}Serra and
Paul N. Schofield and
Damian Smedley and
Christopher Southan and
Tin Wee Tan and
Tatiana A. Tatusova and
Patricia L. Whetzel and
Owen White and
Chisato Yamasaki},
title = {Towards BioDBcore: a community-defined information specification for
biological databases},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/baq027},
doi = {10.1093/DATABASE/BAQ027},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11,
author = {Pascale Gaudet and
Amos Bairoch and
Dawn Field and
Susanna{-}Assunta Sansone and
Chris F. Taylor and
Teresa K. Attwood and
Alex Bateman and
Judith A. Blake and
Carol J. Bult and
J. Michael Cherry and
Rex L. Chisholm and
Guy Cochrane and
Charles E. Cook and
Janan T. Eppig and
Michael Y. Galperin and
Robert Gentleman and
Carole A. Goble and
Takashi Gojobori and
John M. Hancock and
Douglas G. Howe and
Tadashi Imanishi and
Janet Kelso and
David Landsman and
Suzanna E. Lewis and
Ilene Karsch{-}Mizrachi and
Sandra E. Orchard and
B. F. Francis Ouellette and
Shoba Ranganathan and
Lorna J. Richardson and
Philippe Rocca{-}Serra and
Paul N. Schofield and
Damian Smedley and
Christopher Southan and
Tin Wee Tan and
Tatiana A. Tatusova and
Patricia L. Whetzel and
Owen White and
Chisato Yamasaki},
title = {Towards BioDBcore: a community-defined information specification for
biological databases},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {7--10},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1173},
doi = {10.1093/NAR/GKQ1173},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ArandaAAABDFGKKKLMMMNOPREH10,
author = {Bruno Aranda and
P. Achuthan and
Yasmin Alam{-}Faruque and
Irina M. Armean and
Alan J. Bridge and
C. Derow and
Marc Feuermann and
A. T. Ghanbarian and
Samuel Kerrien and
Jyoti Khadake and
Jules Kerssemakers and
C. Leroy and
Michael P. Menden and
Magali Michaut and
Luisa Montecchi{-}Palazzi and
S. N. Neuhauser and
Sandra E. Orchard and
V. Perreau and
Bernd Roechert and
K. van Eijk and
Henning Hermjakob},
title = {The IntAct molecular interaction database in 2010},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {525--531},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp878},
doi = {10.1093/NAR/GKP878},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ArandaAAABDFGKKKLMMMNOPREH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/daglib/p/OrchardK10,
author = {Sandra E. Orchard and
Samuel Kerrien},
editor = {Simon J. Hubbard and
Andrew R. Jones},
title = {Molecular Interactions and Data Standardisation},
booktitle = {Proteome Bioinformatics},
pages = {309--318},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-1-60761-444-9\_21},
doi = {10.1007/978-1-60761-444-9\_21},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/books/daglib/p/OrchardK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/OrchardH08,
author = {Sandra E. Orchard and
Henning Hermjakob},
title = {The {HUPO} proteomics standards initiative - easing communication
and minimizing data loss in a changing world},
journal = {Briefings Bioinform.},
volume = {9},
number = {2},
pages = {166--173},
year = {2008},
url = {https://doi.org/10.1093/bib/bbm061},
doi = {10.1093/BIB/BBM061},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/OrchardH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChiangLOKHGH08,
author = {Tony Chiang and
Nianhua Li and
Sandra E. Orchard and
Samuel Kerrien and
Henning Hermjakob and
Robert Gentleman and
Wolfgang Huber},
title = {Rintact: enabling computational analysis of molecular interaction
data from the IntAct repository},
journal = {Bioinform.},
volume = {24},
number = {8},
pages = {1100--1101},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btm518},
doi = {10.1093/BIOINFORMATICS/BTM518},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChiangLOKHGH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReevesEMOMHOJPHHT08,
author = {Gabrielle A. Reeves and
Karen Eilbeck and
Michele Magrane and
Claire O'Donovan and
Luisa Montecchi{-}Palazzi and
Midori A. Harris and
Sandra E. Orchard and
Rafael C. Jim{\'{e}}nez and
Andreas Prlic and
Tim J. P. Hubbard and
Henning Hermjakob and
Janet M. Thornton},
title = {The Protein Feature Ontology: a tool for the unification of protein
feature annotations},
journal = {Bioinform.},
volume = {24},
number = {23},
pages = {2767--2772},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn528},
doi = {10.1093/BIOINFORMATICS/BTN528},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReevesEMOMHOJPHHT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MulderAA07,
author = {Nicola J. Mulder and
Rolf Apweiler and
Teresa K. Attwood and
Amos Bairoch and
Alex Bateman and
David Binns and
Peer Bork and
Virginie Buillard and
Lorenzo Cerutti and
Richard R. Copley and
Emmanuel Courcelle and
Ujjwal Das and
Louise C. Daugherty and
Mark Dibley and
Robert D. Finn and
Wolfgang Fleischmann and
Julian Gough and
Daniel H. Haft and
Nicolas Hulo and
Sarah Hunter and
Daniel Kahn and
Alexander Kanapin and
Anish Kejariwal and
Alberto Labarga and
Petra S. Langendijk{-}Genevaux and
David Lonsdale and
Rodrigo Lopez and
Ivica Letunic and
Martin Madera and
John Maslen and
Craig McAnulla and
Jennifer McDowall and
Jaina Mistry and
Alex L. Mitchell and
Anastasia N. Nikolskaya and
Sandra E. Orchard and
Christine A. Orengo and
Robert Petryszak and
Jeremy D. Selengut and
Christian J. A. Sigrist and
Paul D. Thomas and
Franck Valentin and
Derek Wilson and
Cathy H. Wu and
Corin Yeats},
title = {New developments in the InterPro database},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {224--228},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl841},
doi = {10.1093/NAR/GKL841},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MulderAA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KerrienAABBDDFFHKKLLLMORRRTZAH07,
author = {Samuel Kerrien and
Yasmin Alam{-}Faruque and
Bruno Aranda and
I. Bancarz and
Alan J. Bridge and
C. Derow and
Emily Dimmer and
Marc Feuermann and
A. Friedrichsen and
Rachael P. Huntley and
C. Kohler and
Jyoti Khadake and
C. Leroy and
A. Liban and
C. Lieftink and
Luisa Montecchi{-}Palazzi and
Sandra E. Orchard and
Judith E. Risse and
Karine Robbe and
Bernd Roechert and
David Thorneycroft and
Y. Zhang and
Rolf Apweiler and
Henning Hermjakob},
title = {IntAct - open source resource for molecular interaction data},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {561--565},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl958},
doi = {10.1093/NAR/GKL958},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KerrienAABBDDFFHKKLLLMORRRTZAH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MulderAABBBBBBCCCDDFGHHHKKKLLLMMMMNOPPQSSSSVW05,
author = {Nicola J. Mulder and
Rolf Apweiler and
Teresa K. Attwood and
Amos Bairoch and
Alex Bateman and
David Binns and
Paul Bradley and
Peer Bork and
Phillip Bucher and
Lorenzo Cerutti and
Richard R. Copley and
Emmanuel Courcelle and
Ujjwal Das and
Richard Durbin and
Wolfgang Fleischmann and
Julian Gough and
Daniel H. Haft and
Nicola Harte and
Nicolas Hulo and
Daniel Kahn and
Alexander Kanapin and
Maria Krestyaninova and
David Lonsdale and
Rodrigo Lopez and
Ivica Letunic and
Martin Madera and
John Maslen and
Jennifer McDowall and
Alex L. Mitchell and
Anastasia N. Nikolskaya and
Sandra E. Orchard and
Marco Pagni and
Chris P. Ponting and
Emmanuel Quevillon and
Jeremy D. Selengut and
Christian J. A. Sigrist and
Ville Silventoinen and
David J. Studholme and
Robert Vaughan and
Cathy H. Wu},
title = {InterPro, progress and status in 2005},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {201--205},
year = {2005},
url = {https://doi.org/10.1093/nar/gki106},
doi = {10.1093/NAR/GKI106},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MulderAABBBBBBCCCDDFGHHHKKKLLLMMMMNOPPQSSSSVW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/OrchardMHA05,
author = {Sandra E. Orchard and
Luisa Montecchi{-}Palazzi and
Henning Hermjakob and
Rolf Apweiler},
editor = {Russ B. Altman and
Tiffany A. Jung and
Teri E. Klein and
A. Keith Dunker and
Lawrence Hunter},
title = {The Use of Common Ontologies and Controlled Vocabularies to Enable
Data Exchange and Deposition for Complex Proteomic Experiments},
booktitle = {Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA,
4-8 January 2005},
publisher = {World Scientific},
year = {2005},
url = {http://psb.stanford.edu/psb-online/proceedings/psb05/orchard.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/OrchardMHA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HermjakobMLMKOVRRVMABCSA04,
author = {Henning Hermjakob and
Luisa Montecchi{-}Palazzi and
Chris Lewington and
Sugath Mudali and
Samuel Kerrien and
Sandra E. Orchard and
Martin Vingron and
Bernd Roechert and
Peter Roepstorff and
Alfonso Valencia and
Hanah Margalit and
John Armstrong and
Amos Bairoch and
Gianni Cesareni and
David James Sherman and
Rolf Apweiler},
title = {IntAct: an open source molecular interaction database},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {452--455},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh052},
doi = {10.1093/NAR/GKH052},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HermjakobMLMKOVRRVMABCSA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MulderAABBBBBBBBCCDDFFGHHHKKKLLLSOPPPSSSVZ03,
author = {Nicola J. Mulder and
Rolf Apweiler and
Terri K. Attwood and
Amos Bairoch and
Daniel Barrell and
Alex Bateman and
David Binns and
Margaret Biswas and
Paul Bradley and
Peer Bork and
Philipp Bucher and
Richard R. Copley and
Emmanuel Courcelle and
Ujjwal Das and
Richard Durbin and
Laurent Falquet and
Wolfgang Fleischmann and
Sam Griffiths{-}Jones and
Daniel H. Haft and
Nicola Harte and
Nicolas Hulo and
Daniel Kahn and
Alexander Kanapin and
Maria Krestyaninova and
Rodrigo Lopez and
Ivica Letunic and
David Lonsdale and
Ville Silventoinen and
Sandra E. Orchard and
Marco Pagni and
David Peyruc and
Chris P. Ponting and
Jeremy D. Selengut and
Florence Servant and
Christian J. A. Sigrist and
Robert Vaughan and
Evgeni M. Zdobnov},
title = {The InterPro Database, 2003 brings increased coverage and new features},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {315--318},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg046},
doi = {10.1093/NAR/GKG046},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MulderAABBBBBBBBCCDDFFGHHHKKKLLLSOPPPSSSVZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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