BibTeX records: Lauren O'Donnell

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@article{DBLP:journals/tmi/ZhangCSNLRWOP24,
  author       = {Fan Zhang and
                  Kang Ik Kevin Cho and
                  Johanna Seitz{-}Holland and
                  Lipeng Ning and
                  Jon Haitz Legarreta and
                  Yogesh Rathi and
                  Carl{-}Fredrik Westin and
                  Lauren J. O'Donnell and
                  Ofer Pasternak},
  title        = {DDParcel: Deep Learning Anatomical Brain Parcellation From Diffusion
                  {MRI}},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {43},
  number       = {3},
  pages        = {1191--1202},
  year         = {2024},
  url          = {https://doi.org/10.1109/TMI.2023.3331691},
  doi          = {10.1109/TMI.2023.3331691},
  timestamp    = {Fri, 22 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tmi/ZhangCSNLRWOP24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2401-04579,
  author       = {Yuxiang Wei and
                  Yuqian Chen and
                  Tengfei Xue and
                  Leo R. Zekelman and
                  Nikos Makris and
                  Yogesh Rathi and
                  Tom Weidong Cai and
                  Fan Zhang and
                  Lauren J. O'Donnell},
  title        = {A Deep Network for Explainable Prediction of Non-Imaging Phenotypes
                  using Anatomical Multi-View Data},
  journal      = {CoRR},
  volume       = {abs/2401.04579},
  year         = {2024},
  url          = {https://doi.org/10.48550/arXiv.2401.04579},
  doi          = {10.48550/ARXIV.2401.04579},
  eprinttype    = {arXiv},
  eprint       = {2401.04579},
  timestamp    = {Mon, 29 Jan 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2401-04579.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/XueZZCSGMRCO23,
  author       = {Tengfei Xue and
                  Fan Zhang and
                  Chaoyi Zhang and
                  Yuqian Chen and
                  Yang Song and
                  Alexandra J. Golby and
                  Nikos Makris and
                  Yogesh Rathi and
                  Weidong Cai and
                  Lauren J. O'Donnell},
  title        = {Superficial white matter analysis: An efficient point-cloud-based
                  deep learning framework with supervised contrastive learning for consistent
                  tractography parcellation across populations and dMRI acquisitions},
  journal      = {Medical Image Anal.},
  volume       = {85},
  pages        = {102759},
  year         = {2023},
  url          = {https://doi.org/10.1016/j.media.2023.102759},
  doi          = {10.1016/J.MEDIA.2023.102759},
  timestamp    = {Tue, 18 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/XueZZCSGMRCO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ChenZXSMRCZO23,
  author       = {Yuqian Chen and
                  Chaoyi Zhang and
                  Tengfei Xue and
                  Yang Song and
                  Nikos Makris and
                  Yogesh Rathi and
                  Tom Weidong Cai and
                  Fan Zhang and
                  Lauren J. O'Donnell},
  title        = {Deep fiber clustering: Anatomically informed fiber clustering with
                  self-supervised deep learning for fast and effective tractography
                  parcellation},
  journal      = {NeuroImage},
  volume       = {273},
  pages        = {120086},
  year         = {2023},
  url          = {https://doi.org/10.1016/j.neuroimage.2023.120086},
  doi          = {10.1016/J.NEUROIMAGE.2023.120086},
  timestamp    = {Wed, 17 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ChenZXSMRCZO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ChenZZXZSMRCO23,
  author       = {Yuqian Chen and
                  Fan Zhang and
                  Leo R. Zekelman and
                  Tengfei Xue and
                  Chaoyi Zhang and
                  Yang Song and
                  Nikos Makris and
                  Yogesh Rathi and
                  Weidong Cai and
                  Lauren J. O'Donnell},
  title        = {Tractgraphcnn: Anatomically Informed Graph {CNN} for Classification
                  Using Diffusion {MRI} Tractography},
  booktitle    = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2023, Cartagena, Colombia, April 18-21, 2023},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2023},
  url          = {https://doi.org/10.1109/ISBI53787.2023.10230547},
  doi          = {10.1109/ISBI53787.2023.10230547},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/ChenZZXZSMRCO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/LiHXXYCTFBRMKBGOZ23,
  author       = {Sipei Li and
                  Jianzhong He and
                  Tengfei Xue and
                  Guoqiang Xie and
                  Shun Yao and
                  Yuqian Chen and
                  Erickson F. Torio and
                  Yuanjing Feng and
                  Dhiego Chaves de Almeida Bastos and
                  Yogesh Rathi and
                  Nikos Makris and
                  Ron Kikinis and
                  Wenya Linda Bi and
                  Alexandra J. Golby and
                  Lauren J. O'Donnell and
                  Fan Zhang},
  title        = {{DEEPRGVP:} {A} novel microstructure-informed supervised contrastive
                  learning framework for automated identification of the retinogeniculate
                  pathway using dMRI tractography},
  booktitle    = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2023, Cartagena, Colombia, April 18-21, 2023},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2023},
  url          = {https://doi.org/10.1109/ISBI53787.2023.10230833},
  doi          = {10.1109/ISBI53787.2023.10230833},
  timestamp    = {Thu, 14 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/LiHXXYCTFBRMKBGOZ23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/VindasAZXOM23,
  author       = {Nabil Vindas and
                  Nicole Labra Avila and
                  Fan Zhang and
                  Tengfei Xue and
                  Lauren J. O'Donnell and
                  Jean{-}Fran{\c{c}}ois Mangin},
  title        = {GeoLab: Geometry-Based Tractography Parcellation of Superficial White
                  Matter},
  booktitle    = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2023, Cartagena, Colombia, April 18-21, 2023},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2023},
  url          = {https://doi.org/10.1109/ISBI53787.2023.10230336},
  doi          = {10.1109/ISBI53787.2023.10230336},
  timestamp    = {Wed, 13 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/VindasAZXOM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/XuCZRMZO23,
  author       = {Xiao Xu and
                  Yuqian Chen and
                  Leo R. Zekelman and
                  Yogesh Rathi and
                  Nikos Makris and
                  Fan Zhang and
                  Lauren J. O'Donnell},
  title        = {Tractography-Based Parcellation of Cerebellar Dentate Nuclei via a
                  Deep Nonnegative Matrix Factorization Clustering Method},
  booktitle    = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2023, Cartagena, Colombia, April 18-21, 2023},
  pages        = {1--4},
  publisher    = {{IEEE}},
  year         = {2023},
  url          = {https://doi.org/10.1109/ISBI53787.2023.10230528},
  doi          = {10.1109/ISBI53787.2023.10230528},
  timestamp    = {Wed, 13 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/XuCZRMZO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/XuXLZWKOC23,
  author       = {Hao Xu and
                  Tengfei Xue and
                  Dongnan Liu and
                  Fan Zhang and
                  Carl{-}Fredrik Westin and
                  Ron Kikinis and
                  Lauren J. O'Donnell and
                  Weidong Cai},
  title        = {A Registration- and Uncertainty-Based Framework for White Matter Tract
                  Segmentation with Only One Annotated Subject},
  booktitle    = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2023, Cartagena, Colombia, April 18-21, 2023},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2023},
  url          = {https://doi.org/10.1109/ISBI53787.2023.10230415},
  doi          = {10.1109/ISBI53787.2023.10230415},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/isbi/XuXLZWKOC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/XueKCZCONR23,
  author       = {Tengfei Xue and
                  Hazhar Sufi Karimi and
                  William Consagra and
                  Fan Zhang and
                  Weidong Cai and
                  Lauren J. O'Donnell and
                  Lipeng Ning and
                  Yogesh Rathi},
  title        = {A Deep Learning Framework for Estimating Multi-Fiber {PICASO} Model
                  Parameters of Tissue Microstructure Using Diffusion {MRI}},
  booktitle    = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2023, Cartagena, Colombia, April 18-21, 2023},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2023},
  url          = {https://doi.org/10.1109/ISBI53787.2023.10230707},
  doi          = {10.1109/ISBI53787.2023.10230707},
  timestamp    = {Wed, 13 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/XueKCZCONR23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/WeiCXZMRCZO23,
  author       = {Yuxiang Wei and
                  Yuqian Chen and
                  Tengfei Xue and
                  Leo R. Zekelman and
                  Nikos Makris and
                  Yogesh Rathi and
                  Weidong Cai and
                  Fan Zhang and
                  Lauren J. O'Donnell},
  editor       = {Muge Karaman and
                  Remika Mito and
                  Elizabeth Powell and
                  Francois Rheault and
                  Stefan Winzeck},
  title        = {A Deep Network for Explainable Prediction of Non-imaging Phenotypes
                  Using Anatomical Multi-view Data},
  booktitle    = {Computational Diffusion {MRI} - 14th International Workshop, {CDMRI}
                  2023, Held in Conjunction with {MICCAI} 2023, Vancouver, BC, Canada,
                  October 8, 2023, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {14328},
  pages        = {165--176},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-47292-3\_15},
  doi          = {10.1007/978-3-031-47292-3\_15},
  timestamp    = {Thu, 22 Feb 2024 20:44:55 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/WeiCXZMRCZO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/XueCZGMRCZO23,
  author       = {Tengfei Xue and
                  Yuqian Chen and
                  Chaoyi Zhang and
                  Alexandra J. Golby and
                  Nikos Makris and
                  Yogesh Rathi and
                  Weidong Cai and
                  Fan Zhang and
                  Lauren J. O'Donnell},
  editor       = {Hayit Greenspan and
                  Anant Madabhushi and
                  Parvin Mousavi and
                  Septimiu Salcudean and
                  James Duncan and
                  Tanveer F. Syeda{-}Mahmood and
                  Russell H. Taylor},
  title        = {TractCloud: Registration-Free Tractography Parcellation with a Novel
                  Local-Global Streamline Point Cloud Representation},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2023 - 26th International Conference, Vancouver, BC, Canada, October
                  8-12, 2023, Proceedings, Part {VIII}},
  series       = {Lecture Notes in Computer Science},
  volume       = {14227},
  pages        = {409--419},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-43993-3\_40},
  doi          = {10.1007/978-3-031-43993-3\_40},
  timestamp    = {Thu, 05 Oct 2023 18:00:40 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/XueCZGMRCZO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2301-01911,
  author       = {Yuqian Chen and
                  Fan Zhang and
                  Leo R. Zekelman and
                  Tengfei Xue and
                  Chaoyi Zhang and
                  Yang Song and
                  Nikos Makris and
                  Yogesh Rathi and
                  Tom Weidong Cai and
                  Lauren J. O'Donnell},
  title        = {TractGraphCNN: anatomically informed graph {CNN} for classification
                  using diffusion {MRI} tractography},
  journal      = {CoRR},
  volume       = {abs/2301.01911},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2301.01911},
  doi          = {10.48550/ARXIV.2301.01911},
  eprinttype    = {arXiv},
  eprint       = {2301.01911},
  timestamp    = {Fri, 03 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2301-01911.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-01147,
  author       = {Nabil Vindas and
                  Nicole Labra Avila and
                  Fan Zhang and
                  Tengfei Xue and
                  Lauren J. O'Donnell and
                  Jean{-}Fran{\c{c}}ois Mangin},
  title        = {GeoLab: Geometry-based Tractography Parcellation of Superficial White
                  Matter},
  journal      = {CoRR},
  volume       = {abs/2303.01147},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2303.01147},
  doi          = {10.48550/ARXIV.2303.01147},
  eprinttype    = {arXiv},
  eprint       = {2303.01147},
  timestamp    = {Tue, 07 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2303-01147.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-09124,
  author       = {Wan Liu and
                  Yuqian Chen and
                  Chuyang Ye and
                  Nikos Makris and
                  Yogesh Rathi and
                  Weidong Cai and
                  Fan Zhang and
                  Lauren J. O'Donnell},
  title        = {Fiber Tract Shape Measures Inform Prediction of Non-Imaging Phenotypes},
  journal      = {CoRR},
  volume       = {abs/2303.09124},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2303.09124},
  doi          = {10.48550/ARXIV.2303.09124},
  eprinttype    = {arXiv},
  eprint       = {2303.09124},
  timestamp    = {Tue, 14 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2303-09124.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-14371,
  author       = {Hao Xu and
                  Tengfei Xue and
                  Dongnan Liu and
                  Fan Zhang and
                  Carl{-}Fredrik Westin and
                  Ron Kikinis and
                  Lauren J. O'Donnell and
                  Weidong Cai},
  title        = {A Registration- and Uncertainty-based Framework for White Matter Tract
                  Segmentation With Only One Annotated Subject},
  journal      = {CoRR},
  volume       = {abs/2303.14371},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2303.14371},
  doi          = {10.48550/ARXIV.2303.14371},
  eprinttype    = {arXiv},
  eprint       = {2303.14371},
  timestamp    = {Thu, 13 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2303-14371.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2306-05623,
  author       = {Jianzhong He and
                  Fan Zhang and
                  Yiang Pan and
                  Yuanjing Feng and
                  Jarrett Rushmore and
                  Erickson Torio and
                  Yogesh Rathi and
                  Nikos Makris and
                  Ron Kikinis and
                  Alexandra J. Golby and
                  Lauren J. O'Donnell},
  title        = {Reconstructing the somatotopic organization of the corticospinal tract
                  remains a challenge for modern tractography methods},
  journal      = {CoRR},
  volume       = {abs/2306.05623},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2306.05623},
  doi          = {10.48550/ARXIV.2306.05623},
  eprinttype    = {arXiv},
  eprint       = {2306.05623},
  timestamp    = {Thu, 15 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2306-05623.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-03982,
  author       = {Yuqian Chen and
                  Leo R. Zekelman and
                  Chaoyi Zhang and
                  Tengfei Xue and
                  Yang Song and
                  Nikos Makris and
                  Yogesh Rathi and
                  Alexandra J. Golby and
                  Weidong Cai and
                  Fan Zhang and
                  Lauren J. O'Donnell},
  title        = {TractGeoNet: {A} geometric deep learning framework for pointwise analysis
                  of tract microstructure to predict language assessment performance},
  journal      = {CoRR},
  volume       = {abs/2307.03982},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2307.03982},
  doi          = {10.48550/ARXIV.2307.03982},
  eprinttype    = {arXiv},
  eprint       = {2307.03982},
  timestamp    = {Tue, 25 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2307-03982.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-09000,
  author       = {Tengfei Xue and
                  Yuqian Chen and
                  Chaoyi Zhang and
                  Alexandra J. Golby and
                  Nikos Makris and
                  Yogesh Rathi and
                  Weidong Cai and
                  Fan Zhang and
                  Lauren J. O'Donnell},
  title        = {TractCloud: Registration-free tractography parcellation with a novel
                  local-global streamline point cloud representation},
  journal      = {CoRR},
  volume       = {abs/2307.09000},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2307.09000},
  doi          = {10.48550/ARXIV.2307.09000},
  eprinttype    = {arXiv},
  eprint       = {2307.09000},
  timestamp    = {Tue, 25 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2307-09000.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ZekelmanZMHCXLD22,
  author       = {Leo R. Zekelman and
                  Fan Zhang and
                  Nikos Makris and
                  Jianzhong He and
                  Yuqian Chen and
                  Tengfei Xue and
                  Daniela Liera and
                  Daniel L. Drane and
                  Yogesh Rathi and
                  Alexandra J. Golby and
                  Lauren J. O'Donnell},
  title        = {White matter association tracts underlying language and theory of
                  mind: An investigation of 809 brains from the Human Connectome Project},
  journal      = {NeuroImage},
  volume       = {246},
  pages        = {118739},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.neuroimage.2021.118739},
  doi          = {10.1016/J.NEUROIMAGE.2021.118739},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ZekelmanZMHCXLD22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ZhangDHSSSYZO22,
  author       = {Fan Zhang and
                  Alessandro Daducci and
                  Yong He and
                  Simona Schiavi and
                  Caio Seguin and
                  Robert E. Smith and
                  Chun{-}Hung Yeh and
                  Tengda Zhao and
                  Lauren J. O'Donnell},
  title        = {Quantitative mapping of the brain's structural connectivity using
                  diffusion {MRI} tractography: {A} review},
  journal      = {NeuroImage},
  volume       = {249},
  pages        = {118870},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.neuroimage.2021.118870},
  doi          = {10.1016/J.NEUROIMAGE.2021.118870},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ZhangDHSSSYZO22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/SinghHSRCCDEFFG22,
  author       = {Nalini M. Singh and
                  Jordan B. Harrod and
                  Sandya Subramanian and
                  Mitchell Robinson and
                  Ken Chang and
                  Suheyla Cetin Karayumak and
                  Adrian Vasile Dalca and
                  Simon B. Eickhoff and
                  Michael Fox and
                  Loraine Franke and
                  Polina Golland and
                  Daniel Haehn and
                  Juan Eugenio Iglesias and
                  Lauren J. O'Donnell and
                  Yangming Ou and
                  Yogesh Rathi and
                  Shan H. Siddiqi and
                  Haoqi Sun and
                  M. Brandon Westover and
                  Susan L. Whitfield{-}Gabrieli and
                  Randy L. Gollub},
  title        = {How Machine Learning is Powering Neuroimaging to Improve Brain Health},
  journal      = {Neuroinformatics},
  volume       = {20},
  number       = {4},
  pages        = {943--964},
  year         = {2022},
  url          = {https://doi.org/10.1007/s12021-022-09572-9},
  doi          = {10.1007/S12021-022-09572-9},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ni/SinghHSRCCDEFFG22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/ZhangWO22,
  author       = {Fan Zhang and
                  William M. Wells III and
                  Lauren J. O'Donnell},
  title        = {Deep Diffusion {MRI} Registration (DDMReg): {A} Deep Learning Method
                  for Diffusion {MRI} Registration},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {41},
  number       = {6},
  pages        = {1454--1467},
  year         = {2022},
  url          = {https://doi.org/10.1109/TMI.2021.3139507},
  doi          = {10.1109/TMI.2021.3139507},
  timestamp    = {Mon, 13 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/ZhangWO22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/XiangSZLCZHOC22,
  author       = {Tiange Xiang and
                  Yang Song and
                  Chaoyi Zhang and
                  Dongnan Liu and
                  Mei Chen and
                  Fan Zhang and
                  Heng Huang and
                  Lauren O'Donnell and
                  Weidong Cai},
  title        = {DSNet: {A} Dual-Stream Framework for Weakly-Supervised Gigapixel Pathology
                  Image Analysis},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {41},
  number       = {8},
  pages        = {2180--2190},
  year         = {2022},
  url          = {https://doi.org/10.1109/TMI.2022.3157983},
  doi          = {10.1109/TMI.2022.3157983},
  timestamp    = {Thu, 25 Aug 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/XiangSZLCZHOC22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/HeZPMRWO22,
  author       = {Hao He and
                  Fan Zhang and
                  Steve Pieper and
                  Nikos Makris and
                  Yogesh Rathi and
                  William M. Wells III and
                  Lauren J. O'Donnell},
  title        = {Model and Predict Age and Sex in Healthy Subjects Using Brain White
                  Matter Features: {A} Deep Learning Approach},
  booktitle    = {19th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2022, Kolkata, India, March 28-31, 2022},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2022},
  url          = {https://doi.org/10.1109/ISBI52829.2022.9761684},
  doi          = {10.1109/ISBI52829.2022.9761684},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/HeZPMRWO22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/XueZZCSMRCO22,
  author       = {Tengfei Xue and
                  Fan Zhang and
                  Chaoyi Zhang and
                  Yuqian Chen and
                  Yang Song and
                  Nikos Makris and
                  Yogesh Rathi and
                  Weidong Cai and
                  Lauren J. O'Donnell},
  title        = {Supwma: Consistent and Efficient Tractography Parcellation of Superficial
                  White Matter with Deep Learning},
  booktitle    = {19th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2022, Kolkata, India, March 28-31, 2022},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2022},
  url          = {https://doi.org/10.1109/ISBI52829.2022.9761541},
  doi          = {10.1109/ISBI52829.2022.9761541},
  timestamp    = {Tue, 03 May 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/XueZZCSMRCO22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ChenZZXZHSMRGCO22,
  author       = {Yuqian Chen and
                  Fan Zhang and
                  Chaoyi Zhang and
                  Tengfei Xue and
                  Leo R. Zekelman and
                  Jianzhong He and
                  Yang Song and
                  Nikos Makris and
                  Yogesh Rathi and
                  Alexandra J. Golby and
                  Weidong Cai and
                  Lauren J. O'Donnell},
  editor       = {Linwei Wang and
                  Qi Dou and
                  P. Thomas Fletcher and
                  Stefanie Speidel and
                  Shuo Li},
  title        = {White Matter Tracts are Point Clouds: Neuropsychological Score Prediction
                  and Critical Region Localization via Geometric Deep Learning},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2022 - 25th International Conference, Singapore, September 18-22,
                  2022, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {13431},
  pages        = {174--184},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-16431-6\_17},
  doi          = {10.1007/978-3-031-16431-6\_17},
  timestamp    = {Tue, 13 Dec 2022 14:39:06 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/ChenZZXZHSMRGCO22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhangXCRWO22,
  author       = {Fan Zhang and
                  Tengfei Xue and
                  Weidong Cai and
                  Yogesh Rathi and
                  Carl{-}Fredrik Westin and
                  Lauren J. O'Donnell},
  editor       = {Linwei Wang and
                  Qi Dou and
                  P. Thomas Fletcher and
                  Stefanie Speidel and
                  Shuo Li},
  title        = {TractoFormer: {A} Novel Fiber-Level Whole Brain Tractography Analysis
                  Framework Using Spectral Embedding and Vision Transformers},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2022 - 25th International Conference, Singapore, September 18-22,
                  2022, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {13431},
  pages        = {196--206},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-16431-6\_19},
  doi          = {10.1007/978-3-031-16431-6\_19},
  timestamp    = {Mon, 19 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ZhangXCRWO22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-12528,
  author       = {Tengfei Xue and
                  Fan Zhang and
                  Chaoyi Zhang and
                  Yuqian Chen and
                  Yang Song and
                  Nikos Makris and
                  Yogesh Rathi and
                  Weidong Cai and
                  Lauren J. O'Donnell},
  title        = {SupWMA: Consistent and Efficient Tractography Parcellation of Superficial
                  White Matter with Deep Learning},
  journal      = {CoRR},
  volume       = {abs/2201.12528},
  year         = {2022},
  url          = {https://arxiv.org/abs/2201.12528},
  eprinttype    = {arXiv},
  eprint       = {2201.12528},
  timestamp    = {Tue, 03 May 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2201-12528.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2202-03595,
  author       = {Hao He and
                  Fan Zhang and
                  Steve Pieper and
                  Nikos Makris and
                  Yogesh Rathi and
                  William M. Wells III and
                  Lauren J. O'Donnell},
  title        = {Model and predict age and sex in healthy subjects using brain white
                  matter features: {A} deep learning approach},
  journal      = {CoRR},
  volume       = {abs/2202.03595},
  year         = {2022},
  url          = {https://arxiv.org/abs/2202.03595},
  eprinttype    = {arXiv},
  eprint       = {2202.03595},
  timestamp    = {Mon, 26 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2202-03595.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2205-00627,
  author       = {Yuqian Chen and
                  Chaoyi Zhang and
                  Tengfei Xue and
                  Yang Song and
                  Nikos Makris and
                  Yogesh Rathi and
                  Tom Weidong Cai and
                  Fan Zhang and
                  Lauren J. O'Donnell},
  title        = {{DFC:} Anatomically Informed Fiber Clustering with Self-supervised
                  Deep Learning for Fast and Effective Tractography Parcellation},
  journal      = {CoRR},
  volume       = {abs/2205.00627},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2205.00627},
  doi          = {10.48550/ARXIV.2205.00627},
  eprinttype    = {arXiv},
  eprint       = {2205.00627},
  timestamp    = {Wed, 10 Aug 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2205-00627.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-02327,
  author       = {Fan Zhang and
                  Tengfei Xue and
                  Weidong Cai and
                  Yogesh Rathi and
                  Carl{-}Fredrik Westin and
                  Lauren J. O'Donnell},
  title        = {TractoFormer: {A} Novel Fiber-level Whole Brain Tractography Analysis
                  Framework Using Spectral Embedding and Vision Transformers},
  journal      = {CoRR},
  volume       = {abs/2207.02327},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2207.02327},
  doi          = {10.48550/ARXIV.2207.02327},
  eprinttype    = {arXiv},
  eprint       = {2207.02327},
  timestamp    = {Wed, 10 Aug 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2207-02327.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-02402,
  author       = {Yuqian Chen and
                  Fan Zhang and
                  Chaoyi Zhang and
                  Tengfei Xue and
                  Leo R. Zekelman and
                  Jianzhong He and
                  Yang Song and
                  Nikos Makris and
                  Yogesh Rathi and
                  Alexandra J. Golby and
                  Tom Weidong Cai and
                  Lauren J. O'Donnell},
  title        = {White Matter Tracts are Point Clouds: Neuropsychological Score Prediction
                  and Critical Region Localization via Geometric Deep Learning},
  journal      = {CoRR},
  volume       = {abs/2207.02402},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2207.02402},
  doi          = {10.48550/ARXIV.2207.02402},
  eprinttype    = {arXiv},
  eprint       = {2207.02402},
  timestamp    = {Wed, 10 Aug 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2207-02402.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-08975,
  author       = {Tengfei Xue and
                  Fan Zhang and
                  Chaoyi Zhang and
                  Yuqian Chen and
                  Yang Song and
                  Alexandra J. Golby and
                  Nikos Makris and
                  Yogesh Rathi and
                  Weidong Cai and
                  Lauren J. O'Donnell},
  title        = {Superficial White Matter Analysis: An Efficient Point-cloud-based
                  Deep Learning Framework with Supervised Contrastive Learning for Consistent
                  Tractography Parcellation across Populations and dMRI Acquisitions},
  journal      = {CoRR},
  volume       = {abs/2207.08975},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2207.08975},
  doi          = {10.48550/ARXIV.2207.08975},
  eprinttype    = {arXiv},
  eprint       = {2207.08975},
  timestamp    = {Wed, 10 Aug 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2207-08975.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2210-07411,
  author       = {Tengfei Xue and
                  Fan Zhang and
                  Leo R. Zekelman and
                  Chaoyi Zhang and
                  Yuqian Chen and
                  Suheyla Cetin Karayumak and
                  Steven D. Pieper and
                  William M. Wells III and
                  Yogesh Rathi and
                  Nikos Makris and
                  Weidong Cai and
                  Lauren J. O'Donnell},
  title        = {A Novel Supervised Contrastive Regression Framework for Prediction
                  of Neurocognitive Measures Using Multi-Site Harmonized Diffusion {MRI}
                  Tractography},
  journal      = {CoRR},
  volume       = {abs/2210.07411},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2210.07411},
  doi          = {10.48550/ARXIV.2210.07411},
  eprinttype    = {arXiv},
  eprint       = {2210.07411},
  timestamp    = {Thu, 10 Nov 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2210-07411.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-07398,
  author       = {Yuxiang Wei and
                  Tengfei Xue and
                  Yogesh Rathi and
                  Nikos Makris and
                  Fan Zhang and
                  Lauren J. O'Donnell},
  title        = {Age Prediction Performance Varies Across Deep, Superficial, and Cerebellar
                  White Matter Connections},
  journal      = {CoRR},
  volume       = {abs/2211.07398},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2211.07398},
  doi          = {10.48550/ARXIV.2211.07398},
  eprinttype    = {arXiv},
  eprint       = {2211.07398},
  timestamp    = {Fri, 18 Nov 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2211-07398.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-08119,
  author       = {Sipei Li and
                  Jianzhong He and
                  Tengfei Xue and
                  Guoqiang Xie and
                  Shun Yao and
                  Yuqian Chen and
                  Erickson F. Torio and
                  Yuanjing Feng and
                  Dhiego Chaves de Almeida Bastos and
                  Yogesh Rathi and
                  Nikos Makris and
                  Ron Kikinis and
                  Wenya Linda Bi and
                  Alexandra J. Golby and
                  Lauren J. O'Donnell and
                  Fan Zhang},
  title        = {DeepRGVP: {A} Novel Microstructure-Informed Supervised Contrastive
                  Learning Framework for Automated Identification Of The Retinogeniculate
                  Pathway Using dMRI Tractography},
  journal      = {CoRR},
  volume       = {abs/2211.08119},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2211.08119},
  doi          = {10.48550/ARXIV.2211.08119},
  eprinttype    = {arXiv},
  eprint       = {2211.08119},
  timestamp    = {Thu, 22 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2211-08119.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/SedghiOKLMW21,
  author       = {Alireza Sedghi and
                  Lauren J. O'Donnell and
                  Tina Kapur and
                  Erik G. Learned{-}Miller and
                  Parvin Mousavi and
                  William M. Wells III},
  title        = {Image registration: Maximum likelihood, minimum entropy and deep learning},
  journal      = {Medical Image Anal.},
  volume       = {69},
  pages        = {101939},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.media.2020.101939},
  doi          = {10.1016/J.MEDIA.2020.101939},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/SedghiOKLMW21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ZhangBCNWOP21,
  author       = {Fan Zhang and
                  Anna Breger and
                  Kang Ik Kevin Cho and
                  Lipeng Ning and
                  Carl{-}Fredrik Westin and
                  Lauren J. O'Donnell and
                  Ofer Pasternak},
  title        = {Deep learning based segmentation of brain tissue from diffusion {MRI}},
  journal      = {NeuroImage},
  volume       = {233},
  pages        = {117934},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.neuroimage.2021.117934},
  doi          = {10.1016/J.NEUROIMAGE.2021.117934},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ZhangBCNWOP21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/SchillingRPHNYG21,
  author       = {Kurt G. Schilling and
                  Fran{\c{c}}ois Rheault and
                  Laurent Petit and
                  Colin B. Hansen and
                  Vishwesh Nath and
                  Fang{-}Cheng Yeh and
                  Gabriel Girard and
                  Muhamed Barakovic and
                  Jonathan Rafael{-}Patino and
                  Thomas Yu and
                  Elda Fischi Gomez and
                  Marco Pizzolato and
                  Mario Ocampo{-}Pineda and
                  Simona Schiavi and
                  Erick Jorge Canales{-}Rodr{\'{\i}}guez and
                  Alessandro Daducci and
                  Cristina Granziera and
                  Giorgio M. Innocenti and
                  Jean{-}Philippe Thiran and
                  Laura Mancini and
                  Stephen J. Wastling and
                  Sirio Cocozza and
                  Maria Petracca and
                  Giuseppe Pontillo and
                  Matteo Mancini and
                  Sjoerd B. Vos and
                  Vejay N. Vakharia and
                  John S. Duncan and
                  Helena Melero and
                  Lidia Manzanedo and
                  Emilio Sanz{-}Morales and
                  {\'{A}}ngel Pe{\~{n}}a{-}Meli{\'{a}}n and
                  Fernando Calamante and
                  Arnaud Attye and
                  Ryan P. Cabeen and
                  Laura Korobova and
                  Arthur W. Toga and
                  Anupa Ambili Vijayakumari and
                  Drew Parker and
                  Ragini Verma and
                  Ahmed M. Radwan and
                  Stefan Sunaert and
                  Louise Emsell and
                  Alberto De Luca and
                  Alexander Leemans and
                  Claude J. Bajada and
                  Hamied A. Haroon and
                  Hojjatollah Azadbakht and
                  Maxime Chamberland and
                  Sila Genc and
                  Chantal M. W. Tax and
                  Ping Hong Yeh and
                  Rujirutana Srikanchana and
                  Colin D. Mcknight and
                  Joseph Yuan{-}Mou Yang and
                  Jian Chen and
                  Claire E. Kelly and
                  Chun{-}Hung Yeh and
                  J{\'{e}}r{\^{o}}me Cochereau and
                  Jerome J. Maller and
                  Thomas Welton and
                  Fabien Almairac and
                  Kiran K. Seunarine and
                  Chris A. Clark and
                  Fan Zhang and
                  Nikos Makris and
                  Alexandra J. Golby and
                  Yogesh Rathi and
                  Lauren J. O'Donnell and
                  Yihao Xia and
                  Dogu Baran Aydogan and
                  Yonggang Shi and
                  Francisco Guerreiro Fernandes and
                  Mathijs Raemaekers and
                  Shaun Warrington and
                  Stijn Michielse and
                  Alonso Ramirez{-}Manzanares and
                  Luis Concha and
                  Ram{\'{o}}n Aranda and
                  Mariano Rivera Meraz and
                  Garikoitz Lerma{-}Usabiaga and
                  Lucas Roitman and
                  Lucius S. Fekonja and
                  Navona Calarco and
                  Michael Joseph and
                  Hajer Nakua and
                  Aristotle N. Voineskos and
                  Philippe Karan and
                  Gabrielle Grenier and
                  Jon Haitz Legarreta and
                  Nagesh Adluru and
                  Veena A. Nair and
                  Vivek Prabhakaran and
                  Andrew L. Alexander and
                  Koji Kamagata and
                  Yuya Saito and
                  Wataru Uchida and
                  Christina Andica and
                  Masahiro Abe and
                  Roza G. Bayrak and
                  Claudia A. M. Gandini Wheeler{-}Kingshott and
                  Egidio D'Angelo and
                  Fulvia Palesi and
                  Giovanni Savini and
                  Nicol{\`{o}} Rolandi and
                  Pamela Guevara and
                  Josselin Houenou and
                  Narciso L{\'{o}}pez{-}L{\'{o}}pez and
                  Jean{-}Fran{\c{c}}ois Mangin and
                  Cyril Poupon and
                  Claudio Rom{\'{a}}n and
                  Andrea V{\'{a}}zquez and
                  Chiara Maffei and
                  Mavilde Arantes and
                  Jos{\'{e}} Paulo Andrade and
                  Susana Maria Silva and
                  Vince D. Calhoun and
                  Eduardo Caverzasi and
                  Simone Sacco and
                  Michael Lauricella and
                  Franco Pestilli and
                  Daniel Bullock and
                  Yang Zhan and
                  Edith Brignoni{-}P{\'{e}}rez and
                  Catherine Lebel and
                  Jess E Reynolds and
                  Igor Nestrasil and
                  Ren{\'{e}} Labounek and
                  Christophe Lenglet and
                  Amy Paulson and
                  Stefania Aulicka and
                  Sarah R. Heilbronner and
                  Katja Heuer and
                  Bramsh Qamar Chandio and
                  Javier Guaje and
                  Wei Tang and
                  Eleftherios Garyfallidis and
                  Rajikha Raja and
                  Adam W. Anderson and
                  Bennett A. Landman and
                  Maxime Descoteaux},
  title        = {Tractography dissection variability: What happens when 42 groups dissect
                  14 white matter bundles on the same dataset?},
  journal      = {NeuroImage},
  volume       = {243},
  pages        = {118502},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.neuroimage.2021.118502},
  doi          = {10.1016/J.NEUROIMAGE.2021.118502},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/SchillingRPHNYG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/LiuZSZOHCC21,
  author       = {Dongnan Liu and
                  Donghao Zhang and
                  Yang Song and
                  Fan Zhang and
                  Lauren O'Donnell and
                  Heng Huang and
                  Mei Chen and
                  Weidong Cai},
  title        = {{PDAM:} {A} Panoptic-Level Feature Alignment Framework for Unsupervised
                  Domain Adaptive Instance Segmentation in Microscopy Images},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {40},
  number       = {1},
  pages        = {154--165},
  year         = {2021},
  url          = {https://doi.org/10.1109/TMI.2020.3023466},
  doi          = {10.1109/TMI.2020.3023466},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/LiuZSZOHCC21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apvis/FrankeW0KPORH21,
  author       = {Loraine Franke and
                  Daniel Karl I. Weidele and
                  Fan Zhang and
                  Suheyla Cetin Karayumak and
                  Steve Pieper and
                  Lauren J. O'Donnell and
                  Yogesh Rathi and
                  Daniel Haehn},
  title        = {FiberStars: Visual Comparison of Diffusion Tractography Data between
                  Multiple Subjects},
  booktitle    = {14th {IEEE} Pacific Visualization Symposium, PacificVis 2021, Tianjin,
                  China, April 19-21, 2021},
  pages        = {116--125},
  publisher    = {{IEEE}},
  year         = {2021},
  url          = {https://doi.org/10.1109/PacificVis52677.2021.00023},
  doi          = {10.1109/PACIFICVIS52677.2021.00023},
  timestamp    = {Mon, 26 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/apvis/FrankeW0KPORH21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ChenSZZOC021,
  author       = {Yuqian Chen and
                  Yang Song and
                  Chaoyi Zhang and
                  Fan Zhang and
                  Lauren O'Donnell and
                  Wojciech Chrzanowski and
                  Weidong Cai},
  title        = {Celltrack {R-CNN:} {A} Novel End-To-End Deep Neural Network For Cell
                  Segmentation And Tracking In Microscopy Images},
  booktitle    = {18th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2021, Nice, France, April 13-16, 2021},
  pages        = {779--782},
  publisher    = {{IEEE}},
  year         = {2021},
  url          = {https://doi.org/10.1109/ISBI48211.2021.9434057},
  doi          = {10.1109/ISBI48211.2021.9434057},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/ChenSZZOC021.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ChenZSMRCZO21,
  author       = {Yuqian Chen and
                  Chaoyi Zhang and
                  Yang Song and
                  Nikos Makris and
                  Yogesh Rathi and
                  Weidong Cai and
                  Fan Zhang and
                  Lauren J. O'Donnell},
  editor       = {Marleen de Bruijne and
                  Philippe C. Cattin and
                  St{\'{e}}phane Cotin and
                  Nicolas Padoy and
                  Stefanie Speidel and
                  Yefeng Zheng and
                  Caroline Essert},
  title        = {Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning
                  for Fast and Effective White Matter Parcellation},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2021 - 24th International Conference, Strasbourg, France, September
                  27 - October 1, 2021, Proceedings, Part {VII}},
  series       = {Lecture Notes in Computer Science},
  volume       = {12907},
  pages        = {497--507},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-030-87234-2\_47},
  doi          = {10.1007/978-3-030-87234-2\_47},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ChenZSMRCZO21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2102-10377,
  author       = {Yuqian Chen and
                  Yang Song and
                  Chaoyi Zhang and
                  Fan Zhang and
                  Lauren O'Donnell and
                  Wojciech Chrzanowski and
                  Weidong Cai},
  title        = {CellTrack {R-CNN:} {A} Novel End-To-End Deep Neural Network for Cell
                  Segmentation and Tracking in Microscopy Images},
  journal      = {CoRR},
  volume       = {abs/2102.10377},
  year         = {2021},
  url          = {https://arxiv.org/abs/2102.10377},
  eprinttype    = {arXiv},
  eprint       = {2102.10377},
  timestamp    = {Tue, 28 Sep 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2102-10377.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2107-04938,
  author       = {Yuqian Chen and
                  Chaoyi Zhang and
                  Yang Song and
                  Nikos Makris and
                  Yogesh Rathi and
                  Tom Weidong Cai and
                  Fan Zhang and
                  Lauren J. O'Donnell},
  title        = {Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning
                  for Fast and Effective White Matter Parcellation},
  journal      = {CoRR},
  volume       = {abs/2107.04938},
  year         = {2021},
  url          = {https://arxiv.org/abs/2107.04938},
  eprinttype    = {arXiv},
  eprint       = {2107.04938},
  timestamp    = {Tue, 28 Sep 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2107-04938.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2109-05788,
  author       = {Tiange Xiang and
                  Yang Song and
                  Chaoyi Zhang and
                  Dongnan Liu and
                  Mei Chen and
                  Fan Zhang and
                  Heng Huang and
                  Lauren O'Donnell and
                  Weidong Cai},
  title        = {DSNet: {A} Dual-Stream Framework for Weakly-Supervised Gigapixel Pathology
                  Image Analysis},
  journal      = {CoRR},
  volume       = {abs/2109.05788},
  year         = {2021},
  url          = {https://arxiv.org/abs/2109.05788},
  eprinttype    = {arXiv},
  eprint       = {2109.05788},
  timestamp    = {Tue, 28 Sep 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2109-05788.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/ZhangKHRGO20,
  author       = {Fan Zhang and
                  Suheyla Cetin Karayumak and
                  Nico Hoffmann and
                  Yogesh Rathi and
                  Alexandra J. Golby and
                  Lauren J. O'Donnell},
  title        = {Deep white matter analysis (DeepWMA): Fast and consistent tractography
                  segmentation},
  journal      = {Medical Image Anal.},
  volume       = {65},
  pages        = {101761},
  year         = {2020},
  url          = {https://doi.org/10.1016/j.media.2020.101761},
  doi          = {10.1016/J.MEDIA.2020.101761},
  timestamp    = {Sun, 11 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/ZhangKHRGO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ZhangXLMENRKAMG20,
  author       = {Fan Zhang and
                  Guoqiang Xie and
                  Laura Leung and
                  Michael A. Mooney and
                  Lorenz Epprecht and
                  Isaiah Norton and
                  Yogesh Rathi and
                  Ron Kikinis and
                  Ossama Al{-}Mefty and
                  Nikos Makris and
                  Alexandra J. Golby and
                  Lauren J. O'Donnell},
  title        = {Creation of a novel trigeminal tractography atlas for automated trigeminal
                  nerve identification},
  journal      = {NeuroImage},
  volume       = {220},
  pages        = {117063},
  year         = {2020},
  url          = {https://doi.org/10.1016/j.neuroimage.2020.117063},
  doi          = {10.1016/J.NEUROIMAGE.2020.117063},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ZhangXLMENRKAMG20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/LiuZS0OHC020,
  author       = {Dongnan Liu and
                  Donghao Zhang and
                  Yang Song and
                  Fan Zhang and
                  Lauren O'Donnell and
                  Heng Huang and
                  Mei Chen and
                  Weidong Cai},
  title        = {Unsupervised Instance Segmentation in Microscopy Images via Panoptic
                  Domain Adaptation and Task Re-Weighting},
  booktitle    = {2020 {IEEE/CVF} Conference on Computer Vision and Pattern Recognition,
                  {CVPR} 2020, Seattle, WA, USA, June 13-19, 2020},
  pages        = {4242--4251},
  publisher    = {Computer Vision Foundation / {IEEE}},
  year         = {2020},
  url          = {https://openaccess.thecvf.com/content\_CVPR\_2020/html/Liu\_Unsupervised\_Instance\_Segmentation\_in\_Microscopy\_Images\_via\_Panoptic\_Domain\_Adaptation\_CVPR\_2020\_paper.html},
  doi          = {10.1109/CVPR42600.2020.00430},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cvpr/LiuZS0OHC020.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/IrimiaFCNZJO20,
  author       = {Andrei Irimia and
                  Di Fan and
                  Nikhil N. Chaudhari and
                  Van Ngo and
                  Fan Zhang and
                  Shantanu H. Joshi and
                  Lauren J. O'Donnell},
  title        = {Mapping Cerebral Connectivity Changes after Mild Traumatic Brain Injury
                  in Older Adults Using Diffusion Tensor Imaging and Riemannian Matching
                  of Elastic Curves},
  booktitle    = {17th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2020, Iowa City, IA, USA, April 3-7, 2020},
  pages        = {1690--1693},
  publisher    = {{IEEE}},
  year         = {2020},
  url          = {https://doi.org/10.1109/ISBI45749.2020.9098476},
  doi          = {10.1109/ISBI45749.2020.9098476},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/IrimiaFCNZJO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/HaehnFZKPOR20,
  author       = {Daniel Haehn and
                  Loraine Franke and
                  Fan Zhang and
                  Suheyla Cetin Karayumak and
                  Steve Pieper and
                  Lauren J. O'Donnell and
                  Yogesh Rathi},
  editor       = {Anne L. Martel and
                  Purang Abolmaesumi and
                  Danail Stoyanov and
                  Diana Mateus and
                  Maria A. Zuluaga and
                  S. Kevin Zhou and
                  Daniel Racoceanu and
                  Leo Joskowicz},
  title        = {{TRAKO:} Efficient Transmission of Tractography Data for Visualization},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020,
                  Proceedings, Part {VII}},
  series       = {Lecture Notes in Computer Science},
  volume       = {12267},
  pages        = {322--332},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-59728-3\_32},
  doi          = {10.1007/978-3-030-59728-3\_32},
  timestamp    = {Mon, 26 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/HaehnFZKPOR20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2004-13630,
  author       = {Daniel Haehn and
                  Loraine Franke and
                  Fan Zhang and
                  Suheyla Cetin Karayumak and
                  Steve Pieper and
                  Lauren O'Donnell and
                  Yogesh Rathi},
  title        = {{TRAKO:} Efficient Transmission of Tractography Data for Visualization},
  journal      = {CoRR},
  volume       = {abs/2004.13630},
  year         = {2020},
  url          = {https://arxiv.org/abs/2004.13630},
  eprinttype    = {arXiv},
  eprint       = {2004.13630},
  timestamp    = {Mon, 26 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2004-13630.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2005-02066,
  author       = {Dongnan Liu and
                  Donghao Zhang and
                  Yang Song and
                  Fan Zhang and
                  Lauren O'Donnell and
                  Heng Huang and
                  Mei Chen and
                  Weidong Cai},
  title        = {Unsupervised Instance Segmentation in Microscopy Images via Panoptic
                  Domain Adaptation and Task Re-weighting},
  journal      = {CoRR},
  volume       = {abs/2005.02066},
  year         = {2020},
  url          = {https://arxiv.org/abs/2005.02066},
  eprinttype    = {arXiv},
  eprint       = {2005.02066},
  timestamp    = {Tue, 21 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2005-02066.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2005-08090,
  author       = {Loraine Franke and
                  Daniel Karl I. Weidele and
                  Fan Zhang and
                  Suheyla Cetin Karayumak and
                  Steve Pieper and
                  Lauren J. O'Donnell and
                  Yogesh Rathi and
                  Daniel Haehn},
  title        = {FiberStars: Visual Comparison of Diffusion Tractography Data between
                  Multiple Subjects},
  journal      = {CoRR},
  volume       = {abs/2005.08090},
  year         = {2020},
  url          = {https://arxiv.org/abs/2005.08090},
  eprinttype    = {arXiv},
  eprint       = {2005.08090},
  timestamp    = {Mon, 26 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2005-08090.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ZhangNOP19,
  author       = {Fan Zhang and
                  Lipeng Ning and
                  Lauren J. O'Donnell and
                  Ofer Pasternak},
  title        = {MK-curve - Characterizing the relation between mean kurtosis and alterations
                  in the diffusion {MRI} signal},
  journal      = {NeuroImage},
  volume       = {196},
  pages        = {68--80},
  year         = {2019},
  url          = {https://doi.org/10.1016/j.neuroimage.2019.04.015},
  doi          = {10.1016/J.NEUROIMAGE.2019.04.015},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ZhangNOP19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ausai/Zhang0LZWWZXOC19,
  author       = {Donghao Zhang and
                  Yang Song and
                  Dongnan Liu and
                  Chaoyi Zhang and
                  Yicheng Wu and
                  Heng Wang and
                  Fan Zhang and
                  Yong Xia and
                  Lauren J. O'Donnell and
                  Weidong Cai},
  editor       = {Jixue Liu and
                  James Bailey},
  title        = {Efficient 3D Depthwise and Separable Convolutions with Dilation for
                  Brain Tumor Segmentation},
  booktitle    = {{AI} 2019: Advances in Artificial Intelligence - 32nd Australasian
                  Joint Conference, Adelaide, SA, Australia, December 2-5, 2019, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11919},
  pages        = {563--573},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-35288-2\_45},
  doi          = {10.1007/978-3-030-35288-2\_45},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ausai/Zhang0LZWWZXOC19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/FanCRCLCZOI19,
  author       = {Di Fan and
                  Nikhil N. Chaudhari and
                  Kenneth A. Rostowsky and
                  Maria Calvillo and
                  Sean K. Lee and
                  Nahian F. Chowdhury and
                  Fan Zhang and
                  Lauren J. O'Donnell and
                  Andrei Irimia},
  title        = {Post-Traumatic Cerebral Microhemorrhages and their Effects Upon White
                  Matter Connectivity in the Aging Human Brain},
  booktitle    = {41st Annual International Conference of the {IEEE} Engineering in
                  Medicine and Biology Society, {EMBC} 2019, Berlin, Germany, July 23-27,
                  2019},
  pages        = {198--203},
  publisher    = {{IEEE}},
  year         = {2019},
  url          = {https://doi.org/10.1109/EMBC.2019.8857921},
  doi          = {10.1109/EMBC.2019.8857921},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/embc/FanCRCLCZOI19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/LiuZ0ZZOC19,
  author       = {Dongnan Liu and
                  Donghao Zhang and
                  Yang Song and
                  Chaoyi Zhang and
                  Fan Zhang and
                  Lauren O'Donnell and
                  Weidong Cai},
  editor       = {Sarit Kraus},
  title        = {Nuclei Segmentation via a Deep Panoptic Model with Semantic Feature
                  Fusion},
  booktitle    = {Proceedings of the Twenty-Eighth International Joint Conference on
                  Artificial Intelligence, {IJCAI} 2019, Macao, China, August 10-16,
                  2019},
  pages        = {861--868},
  publisher    = {ijcai.org},
  year         = {2019},
  url          = {https://doi.org/10.24963/ijcai.2019/121},
  doi          = {10.24963/IJCAI.2019/121},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ijcai/LiuZ0ZZOC19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhangHKRGO19,
  author       = {Fan Zhang and
                  Nico Hoffmann and
                  Suheyla Cetin Karayumak and
                  Yogesh Rathi and
                  Alexandra J. Golby and
                  Lauren J. O'Donnell},
  editor       = {Dinggang Shen and
                  Tianming Liu and
                  Terry M. Peters and
                  Lawrence H. Staib and
                  Caroline Essert and
                  Sean Zhou and
                  Pew{-}Thian Yap and
                  Ali R. Khan},
  title        = {Deep White Matter Analysis: Fast, Consistent Tractography Segmentation
                  Across Populations and dMRI Acquisitions},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2019 - 22nd International Conference, Shenzhen, China, October 13-17,
                  2019, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11766},
  pages        = {599--608},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-32248-9\_67},
  doi          = {10.1007/978-3-030-32248-9\_67},
  timestamp    = {Mon, 19 Feb 2024 14:24:13 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/ZhangHKRGO19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ZhangWNMWGSHSCR18,
  author       = {Fan Zhang and
                  Weining Wu and
                  Lipeng Ning and
                  Gloria McAnulty and
                  Deborah P. Waber and
                  Borjan A. Gagoski and
                  Kiera Sarill and
                  Hesham M. Hamoda and
                  Yang Song and
                  Weidong Cai and
                  Yogesh Rathi and
                  Lauren J. O'Donnell},
  title        = {Suprathreshold fiber cluster statistics: Leveraging white matter geometry
                  to enhance tractography statistical analysis},
  journal      = {NeuroImage},
  volume       = {171},
  pages        = {341--354},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.neuroimage.2018.01.006},
  doi          = {10.1016/J.NEUROIMAGE.2018.01.006},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ZhangWNMWGSHSCR18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ZhangSCSRTPKSMV18,
  author       = {Fan Zhang and
                  Peter Savadjiev and
                  Weidong Cai and
                  Yang Song and
                  Yogesh Rathi and
                  Birkan Tun{\c{c}} and
                  Drew Parker and
                  Tina Kapur and
                  Robert T. Schultz and
                  Nikos Makris and
                  Ragini Verma and
                  Lauren J. O'Donnell},
  title        = {Whole brain white matter connectivity analysis using machine learning:
                  An application to autism},
  journal      = {NeuroImage},
  volume       = {172},
  pages        = {826--837},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.neuroimage.2017.10.029},
  doi          = {10.1016/J.NEUROIMAGE.2017.10.029},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ZhangSCSRTPKSMV18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/SydnorRLZBKSWMW18,
  author       = {Valerie J. Sydnor and
                  Ana Mar{\'{\i}}a Rivas{-}Grajales and
                  Amanda E. Lyall and
                  Fan Zhang and
                  Sylvain Bouix and
                  Sarina Karmacharya and
                  Martha Elizabeth Shenton and
                  Carl{-}Fredrik Westin and
                  Nikos Makris and
                  Demian Wassermann and
                  Lauren J. O'Donnell and
                  Marek Kubicki},
  title        = {A comparison of three fiber tract delineation methods and their impact
                  on white matter analysis},
  journal      = {NeuroImage},
  volume       = {178},
  pages        = {318--331},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.neuroimage.2018.05.044},
  doi          = {10.1016/J.NEUROIMAGE.2018.05.044},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/SydnorRLZBKSWMW18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ZhangWNRRMO18,
  author       = {Fan Zhang and
                  Ye Wu and
                  Isaiah Norton and
                  Laura Rigolo and
                  Yogesh Rathi and
                  Nikos Makris and
                  Lauren J. O'Donnell},
  title        = {An anatomically curated fiber clustering white matter atlas for consistent
                  white matter tract parcellation across the lifespan},
  journal      = {NeuroImage},
  volume       = {179},
  pages        = {429--447},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.neuroimage.2018.06.027},
  doi          = {10.1016/J.NEUROIMAGE.2018.06.027},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ZhangWNRRMO18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/Wu0MNNSPRFWO18,
  author       = {Ye Wu and
                  Fan Zhang and
                  Nikos Makris and
                  Yuping Ning and
                  Isaiah Norton and
                  Shenglin She and
                  Hongjun Peng and
                  Yogesh Rathi and
                  Yuanjing Feng and
                  Huawang Wu and
                  Lauren J. O'Donnell},
  title        = {Investigation into local white matter abnormality in emotional processing
                  and sensorimotor areas using an automatically annotated fiber clustering
                  in major depressive disorder},
  journal      = {NeuroImage},
  volume       = {181},
  pages        = {16--29},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.neuroimage.2018.06.019},
  doi          = {10.1016/J.NEUROIMAGE.2018.06.019},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/Wu0MNNSPRFWO18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iconip/LiuZSZOC18,
  author       = {Dongnan Liu and
                  Donghao Zhang and
                  Yang Song and
                  Fan Zhang and
                  Lauren J. O'Donnell and
                  Weidong Cai},
  editor       = {Long Cheng and
                  Andrew Chi{-}Sing Leung and
                  Seiichi Ozawa},
  title        = {3D Large Kernel Anisotropic Network for Brain Tumor Segmentation},
  booktitle    = {Neural Information Processing - 25th International Conference, {ICONIP}
                  2018, Siem Reap, Cambodia, December 13-16, 2018, Proceedings, Part
                  {VII}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11307},
  pages        = {444--454},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-04239-4\_40},
  doi          = {10.1007/978-3-030-04239-4\_40},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/iconip/LiuZSZOC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccv/SongZLHOC17,
  author       = {Yang Song and
                  Fan Zhang and
                  Qing Li and
                  Heng Huang and
                  Lauren J. O'Donnell and
                  Weidong Cai},
  title        = {Locally-Transferred Fisher Vectors for Texture Classification},
  booktitle    = {{IEEE} International Conference on Computer Vision, {ICCV} 2017, Venice,
                  Italy, October 22-29, 2017},
  pages        = {4922--4930},
  publisher    = {{IEEE} Computer Society},
  year         = {2017},
  url          = {https://doi.org/10.1109/ICCV.2017.526},
  doi          = {10.1109/ICCV.2017.526},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/iccv/SongZLHOC17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ZhangKSNRSSRCWG17,
  author       = {Fan Zhang and
                  Pegah Kahali and
                  Yannick Suter and
                  Isaiah Norton and
                  Laura Rigolo and
                  Peter Savadjiev and
                  Yang Song and
                  Yogesh Rathi and
                  Tom Weidong Cai and
                  William M. Wells III and
                  Alexandra J. Golby and
                  Lauren J. O'Donnell},
  title        = {Automated connectivity-based groupwise cortical atlas generation:
                  Application to data of neurosurgical patients with brain tumors for
                  cortical parcellation prediction},
  booktitle    = {14th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2017, Melbourne, Australia, April 18-21, 2017},
  pages        = {774--777},
  publisher    = {{IEEE}},
  year         = {2017},
  url          = {https://doi.org/10.1109/ISBI.2017.7950633},
  doi          = {10.1109/ISBI.2017.7950633},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/ZhangKSNRSSRCWG17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ZhangNCSWO17,
  author       = {Fan Zhang and
                  Isaiah Norton and
                  Weidong Cai and
                  Yang Song and
                  William M. Wells III and
                  Lauren J. O'Donnell},
  title        = {Comparison between two white matter segmentation strategies: An investigation
                  into white matter segmentation consistency},
  booktitle    = {14th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2017, Melbourne, Australia, April 18-21, 2017},
  pages        = {796--799},
  publisher    = {{IEEE}},
  year         = {2017},
  url          = {https://doi.org/10.1109/ISBI.2017.7950638},
  doi          = {10.1109/ISBI.2017.7950638},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/ZhangNCSWO17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/OtakeMOYFOWTSCP17,
  author       = {Yoshito Otake and
                  Kohei Miyamoto and
                  Axel Ollivier and
                  Futoshi Yokota and
                  Norio Fukuda and
                  Lauren J. O'Donnell and
                  Carl{-}Fredrik Westin and
                  Masaki Takao and
                  Nobuhiko Sugano and
                  Beom Sun Chung and
                  Jin{-}Seo Park and
                  Yoshinobu Sato},
  editor       = {Ben Glocker and
                  Jianhua Yao and
                  Tomaz Vrtovec and
                  Alejandro F. Frangi and
                  Guoyan Zheng},
  title        = {Reconstruction of 3D Muscle Fiber Structure Using High Resolution
                  Cryosectioned Volume},
  booktitle    = {Computational Methods and Clinical Applications in Musculoskeletal
                  Imaging - 5th International Workshop, {MSKI} 2017, Held in Conjunction
                  with {MICCAI} 2017, Quebec City, QC, Canada, September 10, 2017, Revised
                  Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {10734},
  pages        = {85--94},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-74113-0\_8},
  doi          = {10.1007/978-3-319-74113-0\_8},
  timestamp    = {Tue, 11 Oct 2022 14:59:07 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/OtakeMOYFOWTSCP17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhangWNMWGSHSCR17,
  author       = {Fan Zhang and
                  Weining Wu and
                  Lipeng Ning and
                  Gloria McAnulty and
                  Deborah P. Waber and
                  Borjan A. Gagoski and
                  Kiera Sarill and
                  Hesham M. Hamoda and
                  Yang Song and
                  Weidong Cai and
                  Yogesh Rathi and
                  Lauren J. O'Donnell},
  editor       = {Maxime Descoteaux and
                  Lena Maier{-}Hein and
                  Alfred M. Franz and
                  Pierre Jannin and
                  D. Louis Collins and
                  Simon Duchesne},
  title        = {Supra-Threshold Fiber Cluster Statistics for Data-Driven Whole Brain
                  Tractography Analysis},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2017 - 20th International Conference, Quebec City, QC, Canada, September
                  11-13, 2017, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {10433},
  pages        = {556--565},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-66182-7\_64},
  doi          = {10.1007/978-3-319-66182-7\_64},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ZhangWNMWGSHSCR17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/OtakeYFTTYOWSS17,
  author       = {Yoshito Otake and
                  Futoshi Yokota and
                  Norio Fukuda and
                  Masaki Takao and
                  Shu Takagi and
                  Naoto Yamamura and
                  Lauren J. O'Donnell and
                  Carl{-}Fredrik Westin and
                  Nobuhiko Sugano and
                  Yoshinobu Sato},
  editor       = {Maxime Descoteaux and
                  Lena Maier{-}Hein and
                  Alfred M. Franz and
                  Pierre Jannin and
                  D. Louis Collins and
                  Simon Duchesne},
  title        = {Patient-Specific Skeletal Muscle Fiber Modeling from Structure Tensor
                  Field of Clinical {CT} Images},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2017 - 20th International Conference, Quebec City, QC, Canada, September
                  11-13, 2017, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {10433},
  pages        = {656--663},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-66182-7\_75},
  doi          = {10.1007/978-3-319-66182-7\_75},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/OtakeYFTTYOWSS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cars/ChenTOZMRKNPRGO16,
  author       = {Zhenrui Chen and
                  Yanmei Tie and
                  Olutayo I. Olubiyi and
                  Fan Zhang and
                  Alireza Mehrtash and
                  Laura Rigolo and
                  Pegah Kahali and
                  Isaiah Norton and
                  Ofer Pasternak and
                  Yogesh Rathi and
                  Alexandra J. Golby and
                  Lauren J. O'Donnell},
  title        = {Corticospinal tract modeling for neurosurgical planning by tracking
                  through regions of peritumoral edema and crossing fibers using two-tensor
                  unscented Kalman filter tractography},
  journal      = {Int. J. Comput. Assist. Radiol. Surg.},
  volume       = {11},
  number       = {8},
  pages        = {1475--1486},
  year         = {2016},
  url          = {https://doi.org/10.1007/s11548-015-1344-5},
  doi          = {10.1007/S11548-015-1344-5},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cars/ChenTOZMRKNPRGO16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/KapurPFFHOLUPFP16,
  author       = {Tina Kapur and
                  Steve Pieper and
                  Andriy Fedorov and
                  Jean{-}Christophe Fillion{-}Robin and
                  Michael Halle and
                  Lauren O'Donnell and
                  Andras Lasso and
                  Tamas Ungi and
                  Csaba Pinter and
                  Julien Finet and
                  Sonia Pujol and
                  Jagadeesan Jayender and
                  Junichi Tokuda and
                  Isaiah Norton and
                  Ra{\'{u}}l San Jos{\'{e}} Est{\'{e}}par and
                  David T. Gering and
                  Hugo J. W. L. Aerts and
                  Marianna Jakab and
                  Nobuhiko Hata and
                  Luiz Ib{\'{a}}{\~{n}}ez and
                  Daniel J. Blezek and
                  Jim Miller and
                  Stephen R. Aylward and
                  W. Eric L. Grimson and
                  Gabor Fichtinger and
                  William M. Wells III and
                  William E. Lorensen and
                  William J. Schroeder and
                  Ron Kikinis},
  title        = {Increasing the impact of medical image computing using community-based
                  open-access hackathons: The {NA-MIC} and 3D Slicer experience},
  journal      = {Medical Image Anal.},
  volume       = {33},
  pages        = {176--180},
  year         = {2016},
  url          = {https://doi.org/10.1016/j.media.2016.06.035},
  doi          = {10.1016/J.MEDIA.2016.06.035},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/KapurPFFHOLUPFP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/WestinKPSOWMBOK16,
  author       = {Carl{-}Fredrik Westin and
                  Hans Knutsson and
                  Ofer Pasternak and
                  Filip Szczepankiewicz and
                  Evren {\"{O}}zarslan and
                  Danielle van Westen and
                  Cecilia Mattisson and
                  Mats Bogren and
                  Lauren J. O'Donnell and
                  Marek Kubicki and
                  Daniel Topgaard and
                  Markus Nilsson},
  title        = {Q-space trajectory imaging for multidimensional diffusion {MRI} of
                  the human brain},
  journal      = {NeuroImage},
  volume       = {135},
  pages        = {345--362},
  year         = {2016},
  url          = {https://doi.org/10.1016/j.neuroimage.2016.02.039},
  doi          = {10.1016/J.NEUROIMAGE.2016.02.039},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/WestinKPSOWMBOK16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ZhangSCSVWO16,
  author       = {Fan Zhang and
                  Peter Savadjiev and
                  Tom Weidong Cai and
                  Yang Song and
                  Ragini Verma and
                  Carl{-}Fredrik Westin and
                  Lauren J. O'Donnell},
  title        = {Fiber clustering based white matter connectivity analysis for prediction
                  of Autism Spectrum Disorder using diffusion tensor imaging},
  booktitle    = {13th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2016, Prague, Czech Republic, April 13-16, 2016},
  pages        = {564--567},
  publisher    = {{IEEE}},
  year         = {2016},
  url          = {https://doi.org/10.1109/ISBI.2016.7493331},
  doi          = {10.1109/ISBI.2016.7493331},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/ZhangSCSVWO16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/NingLGDDMGZMFSP15,
  author       = {Lipeng Ning and
                  Frederik B. Laun and
                  Yaniv Gur and
                  Edward V. R. DiBella and
                  Samuel Deslauriers{-}Gauthier and
                  Thinhinane Megherbi and
                  Aurobrata Ghosh and
                  Mauro Zucchelli and
                  Gloria Menegaz and
                  Rutger Fick and
                  Samuel St{-}Jean and
                  Michael Paquette and
                  Ram{\'{o}}n Aranda and
                  Maxime Descoteaux and
                  Rachid Deriche and
                  Lauren O'Donnell and
                  Yogesh Rathi},
  title        = {Sparse Reconstruction Challenge for diffusion {MRI:} Validation on
                  a physical phantom to determine which acquisition scheme and analysis
                  method to use?},
  journal      = {Medical Image Anal.},
  volume       = {26},
  number       = {1},
  pages        = {316--331},
  year         = {2015},
  url          = {https://doi.org/10.1016/j.media.2015.10.012},
  doi          = {10.1016/J.MEDIA.2015.10.012},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/mia/NingLGDDMGZMFSP15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/daglib/p/ODonnellS15,
  author       = {Lauren J. O'Donnell and
                  Thomas Schultz},
  editor       = {Ingrid Hotz and
                  Thomas Schultz},
  title        = {Statistical and Machine Learning Methods for Neuroimaging: Examples,
                  Challenges, and Extensions to Diffusion Imaging Data},
  booktitle    = {Visualization and Processing of Higher Order Descriptors for Multi-Valued
                  Data},
  pages        = {299--319},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-15090-1\_15},
  doi          = {10.1007/978-3-319-15090-1\_15},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/daglib/p/ODonnellS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2013cdmri,
  editor       = {Thomas Schultz and
                  Gemma L. Nedjati{-}Gilani and
                  Archana Venkataraman and
                  Lauren O'Donnell and
                  Eleftheria Panagiotaki},
  title        = {Computational Diffusion {MRI} and Brain Connectivity, {MICCAI} Workshops
                  CDMRI/MMBC, Nagoya, Japan, September 22nd, 2013},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-319-02475-2},
  doi          = {10.1007/978-3-319-02475-2},
  isbn         = {978-3-319-02474-5},
  timestamp    = {Fri, 02 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/2013cdmri.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ODonnellGW13,
  author       = {Lauren J. O'Donnell and
                  Alexandra J. Golby and
                  Carl{-}Fredrik Westin},
  title        = {Fiber clustering versus the parcellation-based connectome},
  journal      = {NeuroImage},
  volume       = {80},
  pages        = {283--289},
  year         = {2013},
  url          = {https://doi.org/10.1016/j.neuroimage.2013.04.066},
  doi          = {10.1016/J.NEUROIMAGE.2013.04.066},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ODonnellGW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ODonnellRNWWG12,
  author       = {Lauren J. O'Donnell and
                  Laura Rigolo and
                  Isaiah Norton and
                  William M. Wells III and
                  Carl{-}Fredrik Westin and
                  Alexandra J. Golby},
  title        = {fMRI-DTI modeling via landmark distance atlases for prediction and
                  detection of fiber tracts},
  journal      = {NeuroImage},
  volume       = {60},
  number       = {1},
  pages        = {456--470},
  year         = {2012},
  url          = {https://doi.org/10.1016/j.neuroimage.2011.11.014},
  doi          = {10.1016/J.NEUROIMAGE.2011.11.014},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ODonnellRNWWG12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ODonnellWGW12,
  author       = {Lauren J. O'Donnell and
                  William M. Wells III and
                  Alexandra J. Golby and
                  Carl{-}Fredrik Westin},
  editor       = {Nicholas Ayache and
                  Herv{\'{e}} Delingette and
                  Polina Golland and
                  Kensaku Mori},
  title        = {Unbiased Groupwise Registration of White Matter Tractography},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2012 - 15th International Conference, Nice, France, October 1-5, 2012,
                  Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {7512},
  pages        = {123--130},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-33454-2\_16},
  doi          = {10.1007/978-3-642-33454-2\_16},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ODonnellWGW12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ODonnellWNWRPG10,
  author       = {Lauren J. O'Donnell and
                  Carl{-}Fredrik Westin and
                  Isaiah Norton and
                  Stephen Whalen and
                  Laura Rigolo and
                  Ruth E. Propper and
                  Alexandra J. Golby},
  editor       = {Tianzi Jiang and
                  Nassir Navab and
                  Josien P. W. Pluim and
                  Max A. Viergever},
  title        = {The Fiber Laterality Histogram: {A} New Way to Measure White Matter
                  Asymmetry},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2010, 13th International Conference, Beijing, China, September 20-24,
                  2010, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {6362},
  pages        = {225--232},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-15745-5\_28},
  doi          = {10.1007/978-3-642-15745-5\_28},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ODonnellWNWRPG10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/VoineskosOLMANMPKWS09,
  author       = {Aristotle N. Voineskos and
                  Lauren J. O'Donnell and
                  Nancy J. Lobaugh and
                  Douglas Markant and
                  Stephanie Ameis and
                  Marc Niethammer and
                  Benoit H. Mulsant and
                  Bruce G. Pollock and
                  James L. Kennedy and
                  Carl{-}Fredrik Westin and
                  Martha Elizabeth Shenton},
  title        = {Quantitative examination of a novel clustering method using magnetic
                  resonance diffusion tensor tractography},
  journal      = {NeuroImage},
  volume       = {45},
  number       = {2},
  pages        = {370--376},
  year         = {2009},
  url          = {https://doi.org/10.1016/j.neuroimage.2008.12.028},
  doi          = {10.1016/J.NEUROIMAGE.2008.12.028},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/VoineskosOLMANMPKWS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ODonnellWG09,
  author       = {Lauren J. O'Donnell and
                  Carl{-}Fredrik Westin and
                  Alexandra J. Golby},
  title        = {Tract-based morphometry for white matter group analysis},
  journal      = {NeuroImage},
  volume       = {45},
  number       = {3},
  pages        = {832--844},
  year         = {2009},
  url          = {https://doi.org/10.1016/j.neuroimage.2008.12.023},
  doi          = {10.1016/J.NEUROIMAGE.2008.12.023},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ODonnellWG09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/QaziKOPRWGW08,
  author       = {Arish A. Qazi and
                  Gordon L. Kindlmann and
                  Lauren O'Donnell and
                  Sharon Peled and
                  Alireza Radmanesh and
                  Stephen Whalen and
                  Alexandra J. Golby and
                  Carl{-}Fredrik Westin},
  title        = {Two-tensor streamline tractography through white matter intra-voxel
                  fiber crossings: Assessed by fMRI},
  booktitle    = {{IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR}
                  Workshops 2008, Anchorage, AK, USA, 23-28 June, 2008},
  pages        = {1--8},
  publisher    = {{IEEE} Computer Society},
  year         = {2008},
  url          = {https://doi.org/10.1109/CVPRW.2008.4563001},
  doi          = {10.1109/CVPRW.2008.4563001},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cvpr/QaziKOPRWGW08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/ODonnellW07,
  author       = {Lauren J. O'Donnell and
                  Carl{-}Fredrik Westin},
  title        = {Automatic Tractography Segmentation Using a High-Dimensional White
                  Matter Atlas},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {26},
  number       = {11},
  pages        = {1562--1575},
  year         = {2007},
  url          = {https://doi.org/10.1109/TMI.2007.906785},
  doi          = {10.1109/TMI.2007.906785},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/ODonnellW07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ODonnellWG07,
  author       = {Lauren O'Donnell and
                  Carl{-}Fredrik Westin and
                  Alexandra J. Golby},
  editor       = {Nicholas Ayache and
                  S{\'{e}}bastien Ourselin and
                  Anthony J. Maeder},
  title        = {Tract-Based Morphometry},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2007, 10th International Conference, Brisbane, Australia, October
                  29 - November 2, 2007, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {4792},
  pages        = {161--168},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-75759-7\_20},
  doi          = {10.1007/978-3-540-75759-7\_20},
  timestamp    = {Sun, 02 Jun 2019 21:24:47 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ODonnellWG07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZiyanSOW07,
  author       = {Ulas Ziyan and
                  Mert R. Sabuncu and
                  Lauren O'Donnell and
                  Carl{-}Fredrik Westin},
  editor       = {Nicholas Ayache and
                  S{\'{e}}bastien Ourselin and
                  Anthony J. Maeder},
  title        = {Nonlinear Registration of Diffusion {MR} Images Based on Fiber Bundles},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2007, 10th International Conference, Brisbane, Australia, October
                  29 - November 2, 2007, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {4791},
  pages        = {351--358},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-75757-3\_43},
  doi          = {10.1007/978-3-540-75757-3\_43},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ZiyanSOW07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ODonnellW06,
  author       = {Lauren O'Donnell and
                  Carl{-}Fredrik Westin},
  editor       = {Rasmus Larsen and
                  Mads Nielsen and
                  Jon Sporring},
  title        = {High-Dimensional White Matter Atlas Generation and Group Analysis},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2006, 9th International Conference, Copenhagen, Denmark, October 1-6,
                  2006, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {4191},
  pages        = {243--251},
  publisher    = {Springer},
  year         = {2006},
  url          = {https://doi.org/10.1007/11866763\_30},
  doi          = {10.1007/11866763\_30},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ODonnellW06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ODonnellW05,
  author       = {Lauren O'Donnell and
                  Carl{-}Fredrik Westin},
  editor       = {James S. Duncan and
                  Guido Gerig},
  title        = {White Matter Tract Clustering and Correspondence in Populations},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2005, 8th International Conference, Palm Springs, CA, USA, October
                  26-29, 2005, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {3749},
  pages        = {140--147},
  publisher    = {Springer},
  year         = {2005},
  url          = {https://doi.org/10.1007/11566465\_18},
  doi          = {10.1007/11566465\_18},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ODonnellW05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ODonnellGW04,
  author       = {Lauren O'Donnell and
                  W. Eric L. Grimson and
                  Carl{-}Fredrik Westin},
  editor       = {Christian Barillot and
                  David R. Haynor and
                  Pierre Hellier},
  title        = {Interface Detection in Diffusion Tensor {MRI}},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention -- {MICCAI}
                  2004, 7th International Conference Saint-Malo, France, September 26-29,
                  2004, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {3216},
  pages        = {360--367},
  publisher    = {Springer},
  year         = {2004},
  url          = {https://doi.org/10.1007/978-3-540-30135-6\_44},
  doi          = {10.1007/978-3-540-30135-6\_44},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ODonnellGW04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/is4th/WarfieldTKOWWBJK03,
  author       = {Simon K. Warfield and
                  Ion{-}Florin Talos and
                  Corey Kemper and
                  Lauren O'Donnell and
                  Carl{-}Fredrik Westin and
                  William M. Wells III and
                  Peter M. Black and
                  Ferenc A. Jolesz and
                  Ron Kikinis},
  editor       = {Nicholas Ayache and
                  Herv{\'{e}} Delingette},
  title        = {Capturing Brain Deformation},
  booktitle    = {Surgery Simulation and Soft Tissue Modeling, International Symposium,
                  {IS4TM} 2003, Juan-Les-Pins, France, June 12-13, 2003, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2673},
  pages        = {203--217},
  publisher    = {Springer},
  year         = {2003},
  url          = {https://doi.org/10.1007/3-540-45015-7\_20},
  doi          = {10.1007/3-540-45015-7\_20},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/is4th/WarfieldTKOWWBJK03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/TalosOWWWYPGMMRGBJK03,
  author       = {Ion{-}Florin Talos and
                  Lauren O'Donnell and
                  Carl{-}Fredrik Westin and
                  Simon K. Warfield and
                  William M. Wells III and
                  Seung{-}Schik Yoo and
                  Lawrence P. Panych and
                  Alexandra J. Golby and
                  Hatsuho Mamata and
                  Stefan S. Maier and
                  Peter Ratiu and
                  Charles R. G. Guttmann and
                  Peter M. Black and
                  Ferenc A. Jolesz and
                  Ron Kikinis},
  editor       = {Randy E. Ellis and
                  Terry M. Peters},
  title        = {Diffusion Tensor and Functional {MRI} Fusion with Anatomical {MRI}
                  for Image-Guided Neurosurgery},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2003, 6th International Conference, Montr{\'{e}}al, Canada, November
                  15-18, 2003, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {2878},
  pages        = {407--415},
  publisher    = {Springer},
  year         = {2003},
  url          = {https://doi.org/10.1007/978-3-540-39899-8\_51},
  doi          = {10.1007/978-3-540-39899-8\_51},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/TalosOWWWYPGMMRGBJK03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ODonnellHW02,
  author       = {Lauren O'Donnell and
                  Steven Haker and
                  Carl{-}Fredrik Westin},
  editor       = {Takeyoshi Dohi and
                  Ron Kikinis},
  title        = {New Approaches to Estimation of White Matter Connectivity in Diffusion
                  Tensor {MRI:} Elliptic PDEs and Geodesics in a Tensor-Warped Space},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2002, 5th International Conference, Tokyo, Japan, September 25-28,
                  2002, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {2488},
  pages        = {459--466},
  publisher    = {Springer},
  year         = {2002},
  url          = {https://doi.org/10.1007/3-540-45786-0\_57},
  doi          = {10.1007/3-540-45786-0\_57},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ODonnellHW02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ODonnellWGRSK01,
  author       = {Lauren O'Donnell and
                  Carl{-}Fredrik Westin and
                  W. Eric L. Grimson and
                  Juan Ruiz{-}Alzola and
                  Martha Elizabeth Shenton and
                  Ron Kikinis},
  editor       = {Wiro J. Niessen and
                  Max A. Viergever},
  title        = {Phase-Based User-Steered Image Segmentation},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2001, 4th International Conference, Utrecht, The Netherlands, October
                  14-17, 2001, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2208},
  pages        = {1022--1030},
  publisher    = {Springer},
  year         = {2001},
  url          = {https://doi.org/10.1007/3-540-45468-3\_122},
  doi          = {10.1007/3-540-45468-3\_122},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ODonnellWGRSK01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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