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BibTeX records: Lauren O'Donnell
@article{DBLP:journals/tmi/ZhangCSNLRWOP24, author = {Fan Zhang and Kang Ik Kevin Cho and Johanna Seitz{-}Holland and Lipeng Ning and Jon Haitz Legarreta and Yogesh Rathi and Carl{-}Fredrik Westin and Lauren J. O'Donnell and Ofer Pasternak}, title = {DDParcel: Deep Learning Anatomical Brain Parcellation From Diffusion {MRI}}, journal = {{IEEE} Trans. Medical Imaging}, volume = {43}, number = {3}, pages = {1191--1202}, year = {2024}, url = {https://doi.org/10.1109/TMI.2023.3331691}, doi = {10.1109/TMI.2023.3331691}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tmi/ZhangCSNLRWOP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2401-04579, author = {Yuxiang Wei and Yuqian Chen and Tengfei Xue and Leo R. Zekelman and Nikos Makris and Yogesh Rathi and Tom Weidong Cai and Fan Zhang and Lauren J. O'Donnell}, title = {A Deep Network for Explainable Prediction of Non-Imaging Phenotypes using Anatomical Multi-View Data}, journal = {CoRR}, volume = {abs/2401.04579}, year = {2024}, url = {https://doi.org/10.48550/arXiv.2401.04579}, doi = {10.48550/ARXIV.2401.04579}, eprinttype = {arXiv}, eprint = {2401.04579}, timestamp = {Mon, 29 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2401-04579.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/XueZZCSGMRCO23, author = {Tengfei Xue and Fan Zhang and Chaoyi Zhang and Yuqian Chen and Yang Song and Alexandra J. Golby and Nikos Makris and Yogesh Rathi and Weidong Cai and Lauren J. O'Donnell}, title = {Superficial white matter analysis: An efficient point-cloud-based deep learning framework with supervised contrastive learning for consistent tractography parcellation across populations and dMRI acquisitions}, journal = {Medical Image Anal.}, volume = {85}, pages = {102759}, year = {2023}, url = {https://doi.org/10.1016/j.media.2023.102759}, doi = {10.1016/J.MEDIA.2023.102759}, timestamp = {Tue, 18 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/XueZZCSGMRCO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/ChenZXSMRCZO23, author = {Yuqian Chen and Chaoyi Zhang and Tengfei Xue and Yang Song and Nikos Makris and Yogesh Rathi and Tom Weidong Cai and Fan Zhang and Lauren J. O'Donnell}, title = {Deep fiber clustering: Anatomically informed fiber clustering with self-supervised deep learning for fast and effective tractography parcellation}, journal = {NeuroImage}, volume = {273}, pages = {120086}, year = {2023}, url = {https://doi.org/10.1016/j.neuroimage.2023.120086}, doi = {10.1016/J.NEUROIMAGE.2023.120086}, timestamp = {Wed, 17 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/ChenZXSMRCZO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/ChenZZXZSMRCO23, author = {Yuqian Chen and Fan Zhang and Leo R. Zekelman and Tengfei Xue and Chaoyi Zhang and Yang Song and Nikos Makris and Yogesh Rathi and Weidong Cai and Lauren J. O'Donnell}, title = {Tractgraphcnn: Anatomically Informed Graph {CNN} for Classification Using Diffusion {MRI} Tractography}, booktitle = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2023, Cartagena, Colombia, April 18-21, 2023}, pages = {1--5}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/ISBI53787.2023.10230547}, doi = {10.1109/ISBI53787.2023.10230547}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/ChenZZXZSMRCO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/LiHXXYCTFBRMKBGOZ23, author = {Sipei Li and Jianzhong He and Tengfei Xue and Guoqiang Xie and Shun Yao and Yuqian Chen and Erickson F. Torio and Yuanjing Feng and Dhiego Chaves de Almeida Bastos and Yogesh Rathi and Nikos Makris and Ron Kikinis and Wenya Linda Bi and Alexandra J. Golby and Lauren J. O'Donnell and Fan Zhang}, title = {{DEEPRGVP:} {A} novel microstructure-informed supervised contrastive learning framework for automated identification of the retinogeniculate pathway using dMRI tractography}, booktitle = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2023, Cartagena, Colombia, April 18-21, 2023}, pages = {1--5}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/ISBI53787.2023.10230833}, doi = {10.1109/ISBI53787.2023.10230833}, timestamp = {Thu, 14 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/LiHXXYCTFBRMKBGOZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/VindasAZXOM23, author = {Nabil Vindas and Nicole Labra Avila and Fan Zhang and Tengfei Xue and Lauren J. O'Donnell and Jean{-}Fran{\c{c}}ois Mangin}, title = {GeoLab: Geometry-Based Tractography Parcellation of Superficial White Matter}, booktitle = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2023, Cartagena, Colombia, April 18-21, 2023}, pages = {1--5}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/ISBI53787.2023.10230336}, doi = {10.1109/ISBI53787.2023.10230336}, timestamp = {Wed, 13 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/VindasAZXOM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/XuCZRMZO23, author = {Xiao Xu and Yuqian Chen and Leo R. Zekelman and Yogesh Rathi and Nikos Makris and Fan Zhang and Lauren J. O'Donnell}, title = {Tractography-Based Parcellation of Cerebellar Dentate Nuclei via a Deep Nonnegative Matrix Factorization Clustering Method}, booktitle = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2023, Cartagena, Colombia, April 18-21, 2023}, pages = {1--4}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/ISBI53787.2023.10230528}, doi = {10.1109/ISBI53787.2023.10230528}, timestamp = {Wed, 13 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/XuCZRMZO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/XuXLZWKOC23, author = {Hao Xu and Tengfei Xue and Dongnan Liu and Fan Zhang and Carl{-}Fredrik Westin and Ron Kikinis and Lauren J. O'Donnell and Weidong Cai}, title = {A Registration- and Uncertainty-Based Framework for White Matter Tract Segmentation with Only One Annotated Subject}, booktitle = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2023, Cartagena, Colombia, April 18-21, 2023}, pages = {1--5}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/ISBI53787.2023.10230415}, doi = {10.1109/ISBI53787.2023.10230415}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/isbi/XuXLZWKOC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/XueKCZCONR23, author = {Tengfei Xue and Hazhar Sufi Karimi and William Consagra and Fan Zhang and Weidong Cai and Lauren J. O'Donnell and Lipeng Ning and Yogesh Rathi}, title = {A Deep Learning Framework for Estimating Multi-Fiber {PICASO} Model Parameters of Tissue Microstructure Using Diffusion {MRI}}, booktitle = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2023, Cartagena, Colombia, April 18-21, 2023}, pages = {1--5}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/ISBI53787.2023.10230707}, doi = {10.1109/ISBI53787.2023.10230707}, timestamp = {Wed, 13 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/XueKCZCONR23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/WeiCXZMRCZO23, author = {Yuxiang Wei and Yuqian Chen and Tengfei Xue and Leo R. Zekelman and Nikos Makris and Yogesh Rathi and Weidong Cai and Fan Zhang and Lauren J. O'Donnell}, editor = {Muge Karaman and Remika Mito and Elizabeth Powell and Francois Rheault and Stefan Winzeck}, title = {A Deep Network for Explainable Prediction of Non-imaging Phenotypes Using Anatomical Multi-view Data}, booktitle = {Computational Diffusion {MRI} - 14th International Workshop, {CDMRI} 2023, Held in Conjunction with {MICCAI} 2023, Vancouver, BC, Canada, October 8, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14328}, pages = {165--176}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-47292-3\_15}, doi = {10.1007/978-3-031-47292-3\_15}, timestamp = {Thu, 22 Feb 2024 20:44:55 +0100}, biburl = {https://dblp.org/rec/conf/miccai/WeiCXZMRCZO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/XueCZGMRCZO23, author = {Tengfei Xue and Yuqian Chen and Chaoyi Zhang and Alexandra J. Golby and Nikos Makris and Yogesh Rathi and Weidong Cai and Fan Zhang and Lauren J. O'Donnell}, editor = {Hayit Greenspan and Anant Madabhushi and Parvin Mousavi and Septimiu Salcudean and James Duncan and Tanveer F. Syeda{-}Mahmood and Russell H. Taylor}, title = {TractCloud: Registration-Free Tractography Parcellation with a Novel Local-Global Streamline Point Cloud Representation}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part {VIII}}, series = {Lecture Notes in Computer Science}, volume = {14227}, pages = {409--419}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-43993-3\_40}, doi = {10.1007/978-3-031-43993-3\_40}, timestamp = {Thu, 05 Oct 2023 18:00:40 +0200}, biburl = {https://dblp.org/rec/conf/miccai/XueCZGMRCZO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2301-01911, author = {Yuqian Chen and Fan Zhang and Leo R. Zekelman and Tengfei Xue and Chaoyi Zhang and Yang Song and Nikos Makris and Yogesh Rathi and Tom Weidong Cai and Lauren J. O'Donnell}, title = {TractGraphCNN: anatomically informed graph {CNN} for classification using diffusion {MRI} tractography}, journal = {CoRR}, volume = {abs/2301.01911}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2301.01911}, doi = {10.48550/ARXIV.2301.01911}, eprinttype = {arXiv}, eprint = {2301.01911}, timestamp = {Fri, 03 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2301-01911.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2303-01147, author = {Nabil Vindas and Nicole Labra Avila and Fan Zhang and Tengfei Xue and Lauren J. O'Donnell and Jean{-}Fran{\c{c}}ois Mangin}, title = {GeoLab: Geometry-based Tractography Parcellation of Superficial White Matter}, journal = {CoRR}, volume = {abs/2303.01147}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2303.01147}, doi = {10.48550/ARXIV.2303.01147}, eprinttype = {arXiv}, eprint = {2303.01147}, timestamp = {Tue, 07 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2303-01147.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2303-09124, author = {Wan Liu and Yuqian Chen and Chuyang Ye and Nikos Makris and Yogesh Rathi and Weidong Cai and Fan Zhang and Lauren J. O'Donnell}, title = {Fiber Tract Shape Measures Inform Prediction of Non-Imaging Phenotypes}, journal = {CoRR}, volume = {abs/2303.09124}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2303.09124}, doi = {10.48550/ARXIV.2303.09124}, eprinttype = {arXiv}, eprint = {2303.09124}, timestamp = {Tue, 14 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2303-09124.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2303-14371, author = {Hao Xu and Tengfei Xue and Dongnan Liu and Fan Zhang and Carl{-}Fredrik Westin and Ron Kikinis and Lauren J. O'Donnell and Weidong Cai}, title = {A Registration- and Uncertainty-based Framework for White Matter Tract Segmentation With Only One Annotated Subject}, journal = {CoRR}, volume = {abs/2303.14371}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2303.14371}, doi = {10.48550/ARXIV.2303.14371}, eprinttype = {arXiv}, eprint = {2303.14371}, timestamp = {Thu, 13 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2303-14371.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2306-05623, author = {Jianzhong He and Fan Zhang and Yiang Pan and Yuanjing Feng and Jarrett Rushmore and Erickson Torio and Yogesh Rathi and Nikos Makris and Ron Kikinis and Alexandra J. Golby and Lauren J. O'Donnell}, title = {Reconstructing the somatotopic organization of the corticospinal tract remains a challenge for modern tractography methods}, journal = {CoRR}, volume = {abs/2306.05623}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2306.05623}, doi = {10.48550/ARXIV.2306.05623}, eprinttype = {arXiv}, eprint = {2306.05623}, timestamp = {Thu, 15 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2306-05623.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2307-03982, author = {Yuqian Chen and Leo R. Zekelman and Chaoyi Zhang and Tengfei Xue and Yang Song and Nikos Makris and Yogesh Rathi and Alexandra J. Golby and Weidong Cai and Fan Zhang and Lauren J. O'Donnell}, title = {TractGeoNet: {A} geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance}, journal = {CoRR}, volume = {abs/2307.03982}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2307.03982}, doi = {10.48550/ARXIV.2307.03982}, eprinttype = {arXiv}, eprint = {2307.03982}, timestamp = {Tue, 25 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2307-03982.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2307-09000, author = {Tengfei Xue and Yuqian Chen and Chaoyi Zhang and Alexandra J. Golby and Nikos Makris and Yogesh Rathi and Weidong Cai and Fan Zhang and Lauren J. O'Donnell}, title = {TractCloud: Registration-free tractography parcellation with a novel local-global streamline point cloud representation}, journal = {CoRR}, volume = {abs/2307.09000}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2307.09000}, doi = {10.48550/ARXIV.2307.09000}, eprinttype = {arXiv}, eprint = {2307.09000}, timestamp = {Tue, 25 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2307-09000.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/ZekelmanZMHCXLD22, author = {Leo R. Zekelman and Fan Zhang and Nikos Makris and Jianzhong He and Yuqian Chen and Tengfei Xue and Daniela Liera and Daniel L. Drane and Yogesh Rathi and Alexandra J. Golby and Lauren J. O'Donnell}, title = {White matter association tracts underlying language and theory of mind: An investigation of 809 brains from the Human Connectome Project}, journal = {NeuroImage}, volume = {246}, pages = {118739}, year = {2022}, url = {https://doi.org/10.1016/j.neuroimage.2021.118739}, doi = {10.1016/J.NEUROIMAGE.2021.118739}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/ZekelmanZMHCXLD22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/ZhangDHSSSYZO22, author = {Fan Zhang and Alessandro Daducci and Yong He and Simona Schiavi and Caio Seguin and Robert E. Smith and Chun{-}Hung Yeh and Tengda Zhao and Lauren J. O'Donnell}, title = {Quantitative mapping of the brain's structural connectivity using diffusion {MRI} tractography: {A} review}, journal = {NeuroImage}, volume = {249}, pages = {118870}, year = {2022}, url = {https://doi.org/10.1016/j.neuroimage.2021.118870}, doi = {10.1016/J.NEUROIMAGE.2021.118870}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/ZhangDHSSSYZO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ni/SinghHSRCCDEFFG22, author = {Nalini M. Singh and Jordan B. Harrod and Sandya Subramanian and Mitchell Robinson and Ken Chang and Suheyla Cetin Karayumak and Adrian Vasile Dalca and Simon B. Eickhoff and Michael Fox and Loraine Franke and Polina Golland and Daniel Haehn and Juan Eugenio Iglesias and Lauren J. O'Donnell and Yangming Ou and Yogesh Rathi and Shan H. Siddiqi and Haoqi Sun and M. Brandon Westover and Susan L. Whitfield{-}Gabrieli and Randy L. Gollub}, title = {How Machine Learning is Powering Neuroimaging to Improve Brain Health}, journal = {Neuroinformatics}, volume = {20}, number = {4}, pages = {943--964}, year = {2022}, url = {https://doi.org/10.1007/s12021-022-09572-9}, doi = {10.1007/S12021-022-09572-9}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ni/SinghHSRCCDEFFG22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/ZhangWO22, author = {Fan Zhang and William M. Wells III and Lauren J. O'Donnell}, title = {Deep Diffusion {MRI} Registration (DDMReg): {A} Deep Learning Method for Diffusion {MRI} Registration}, journal = {{IEEE} Trans. Medical Imaging}, volume = {41}, number = {6}, pages = {1454--1467}, year = {2022}, url = {https://doi.org/10.1109/TMI.2021.3139507}, doi = {10.1109/TMI.2021.3139507}, timestamp = {Mon, 13 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/ZhangWO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/XiangSZLCZHOC22, author = {Tiange Xiang and Yang Song and Chaoyi Zhang and Dongnan Liu and Mei Chen and Fan Zhang and Heng Huang and Lauren O'Donnell and Weidong Cai}, title = {DSNet: {A} Dual-Stream Framework for Weakly-Supervised Gigapixel Pathology Image Analysis}, journal = {{IEEE} Trans. Medical Imaging}, volume = {41}, number = {8}, pages = {2180--2190}, year = {2022}, url = {https://doi.org/10.1109/TMI.2022.3157983}, doi = {10.1109/TMI.2022.3157983}, timestamp = {Thu, 25 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/XiangSZLCZHOC22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/HeZPMRWO22, author = {Hao He and Fan Zhang and Steve Pieper and Nikos Makris and Yogesh Rathi and William M. Wells III and Lauren J. O'Donnell}, title = {Model and Predict Age and Sex in Healthy Subjects Using Brain White Matter Features: {A} Deep Learning Approach}, booktitle = {19th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2022, Kolkata, India, March 28-31, 2022}, pages = {1--5}, publisher = {{IEEE}}, year = {2022}, url = {https://doi.org/10.1109/ISBI52829.2022.9761684}, doi = {10.1109/ISBI52829.2022.9761684}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/HeZPMRWO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/XueZZCSMRCO22, author = {Tengfei Xue and Fan Zhang and Chaoyi Zhang and Yuqian Chen and Yang Song and Nikos Makris and Yogesh Rathi and Weidong Cai and Lauren J. O'Donnell}, title = {Supwma: Consistent and Efficient Tractography Parcellation of Superficial White Matter with Deep Learning}, booktitle = {19th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2022, Kolkata, India, March 28-31, 2022}, pages = {1--5}, publisher = {{IEEE}}, year = {2022}, url = {https://doi.org/10.1109/ISBI52829.2022.9761541}, doi = {10.1109/ISBI52829.2022.9761541}, timestamp = {Tue, 03 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/XueZZCSMRCO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ChenZZXZHSMRGCO22, author = {Yuqian Chen and Fan Zhang and Chaoyi Zhang and Tengfei Xue and Leo R. Zekelman and Jianzhong He and Yang Song and Nikos Makris and Yogesh Rathi and Alexandra J. Golby and Weidong Cai and Lauren J. O'Donnell}, editor = {Linwei Wang and Qi Dou and P. Thomas Fletcher and Stefanie Speidel and Shuo Li}, title = {White Matter Tracts are Point Clouds: Neuropsychological Score Prediction and Critical Region Localization via Geometric Deep Learning}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2022 - 25th International Conference, Singapore, September 18-22, 2022, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {13431}, pages = {174--184}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-16431-6\_17}, doi = {10.1007/978-3-031-16431-6\_17}, timestamp = {Tue, 13 Dec 2022 14:39:06 +0100}, biburl = {https://dblp.org/rec/conf/miccai/ChenZZXZHSMRGCO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ZhangXCRWO22, author = {Fan Zhang and Tengfei Xue and Weidong Cai and Yogesh Rathi and Carl{-}Fredrik Westin and Lauren J. O'Donnell}, editor = {Linwei Wang and Qi Dou and P. Thomas Fletcher and Stefanie Speidel and Shuo Li}, title = {TractoFormer: {A} Novel Fiber-Level Whole Brain Tractography Analysis Framework Using Spectral Embedding and Vision Transformers}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2022 - 25th International Conference, Singapore, September 18-22, 2022, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {13431}, pages = {196--206}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-16431-6\_19}, doi = {10.1007/978-3-031-16431-6\_19}, timestamp = {Mon, 19 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/ZhangXCRWO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2201-12528, author = {Tengfei Xue and Fan Zhang and Chaoyi Zhang and Yuqian Chen and Yang Song and Nikos Makris and Yogesh Rathi and Weidong Cai and Lauren J. O'Donnell}, title = {SupWMA: Consistent and Efficient Tractography Parcellation of Superficial White Matter with Deep Learning}, journal = {CoRR}, volume = {abs/2201.12528}, year = {2022}, url = {https://arxiv.org/abs/2201.12528}, eprinttype = {arXiv}, eprint = {2201.12528}, timestamp = {Tue, 03 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2201-12528.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2202-03595, author = {Hao He and Fan Zhang and Steve Pieper and Nikos Makris and Yogesh Rathi and William M. Wells III and Lauren J. O'Donnell}, title = {Model and predict age and sex in healthy subjects using brain white matter features: {A} deep learning approach}, journal = {CoRR}, volume = {abs/2202.03595}, year = {2022}, url = {https://arxiv.org/abs/2202.03595}, eprinttype = {arXiv}, eprint = {2202.03595}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2202-03595.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2205-00627, author = {Yuqian Chen and Chaoyi Zhang and Tengfei Xue and Yang Song and Nikos Makris and Yogesh Rathi and Tom Weidong Cai and Fan Zhang and Lauren J. O'Donnell}, title = {{DFC:} Anatomically Informed Fiber Clustering with Self-supervised Deep Learning for Fast and Effective Tractography Parcellation}, journal = {CoRR}, volume = {abs/2205.00627}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2205.00627}, doi = {10.48550/ARXIV.2205.00627}, eprinttype = {arXiv}, eprint = {2205.00627}, timestamp = {Wed, 10 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2205-00627.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2207-02327, author = {Fan Zhang and Tengfei Xue and Weidong Cai and Yogesh Rathi and Carl{-}Fredrik Westin and Lauren J. O'Donnell}, title = {TractoFormer: {A} Novel Fiber-level Whole Brain Tractography Analysis Framework Using Spectral Embedding and Vision Transformers}, journal = {CoRR}, volume = {abs/2207.02327}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2207.02327}, doi = {10.48550/ARXIV.2207.02327}, eprinttype = {arXiv}, eprint = {2207.02327}, timestamp = {Wed, 10 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2207-02327.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2207-02402, author = {Yuqian Chen and Fan Zhang and Chaoyi Zhang and Tengfei Xue and Leo R. Zekelman and Jianzhong He and Yang Song and Nikos Makris and Yogesh Rathi and Alexandra J. Golby and Tom Weidong Cai and Lauren J. O'Donnell}, title = {White Matter Tracts are Point Clouds: Neuropsychological Score Prediction and Critical Region Localization via Geometric Deep Learning}, journal = {CoRR}, volume = {abs/2207.02402}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2207.02402}, doi = {10.48550/ARXIV.2207.02402}, eprinttype = {arXiv}, eprint = {2207.02402}, timestamp = {Wed, 10 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2207-02402.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2207-08975, author = {Tengfei Xue and Fan Zhang and Chaoyi Zhang and Yuqian Chen and Yang Song and Alexandra J. Golby and Nikos Makris and Yogesh Rathi and Weidong Cai and Lauren J. O'Donnell}, title = {Superficial White Matter Analysis: An Efficient Point-cloud-based Deep Learning Framework with Supervised Contrastive Learning for Consistent Tractography Parcellation across Populations and dMRI Acquisitions}, journal = {CoRR}, volume = {abs/2207.08975}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2207.08975}, doi = {10.48550/ARXIV.2207.08975}, eprinttype = {arXiv}, eprint = {2207.08975}, timestamp = {Wed, 10 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2207-08975.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2210-07411, author = {Tengfei Xue and Fan Zhang and Leo R. Zekelman and Chaoyi Zhang and Yuqian Chen and Suheyla Cetin Karayumak and Steven D. Pieper and William M. Wells III and Yogesh Rathi and Nikos Makris and Weidong Cai and Lauren J. O'Donnell}, title = {A Novel Supervised Contrastive Regression Framework for Prediction of Neurocognitive Measures Using Multi-Site Harmonized Diffusion {MRI} Tractography}, journal = {CoRR}, volume = {abs/2210.07411}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2210.07411}, doi = {10.48550/ARXIV.2210.07411}, eprinttype = {arXiv}, eprint = {2210.07411}, timestamp = {Thu, 10 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2210-07411.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2211-07398, author = {Yuxiang Wei and Tengfei Xue and Yogesh Rathi and Nikos Makris and Fan Zhang and Lauren J. O'Donnell}, title = {Age Prediction Performance Varies Across Deep, Superficial, and Cerebellar White Matter Connections}, journal = {CoRR}, volume = {abs/2211.07398}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2211.07398}, doi = {10.48550/ARXIV.2211.07398}, eprinttype = {arXiv}, eprint = {2211.07398}, timestamp = {Fri, 18 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2211-07398.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2211-08119, author = {Sipei Li and Jianzhong He and Tengfei Xue and Guoqiang Xie and Shun Yao and Yuqian Chen and Erickson F. Torio and Yuanjing Feng and Dhiego Chaves de Almeida Bastos and Yogesh Rathi and Nikos Makris and Ron Kikinis and Wenya Linda Bi and Alexandra J. Golby and Lauren J. O'Donnell and Fan Zhang}, title = {DeepRGVP: {A} Novel Microstructure-Informed Supervised Contrastive Learning Framework for Automated Identification Of The Retinogeniculate Pathway Using dMRI Tractography}, journal = {CoRR}, volume = {abs/2211.08119}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2211.08119}, doi = {10.48550/ARXIV.2211.08119}, eprinttype = {arXiv}, eprint = {2211.08119}, timestamp = {Thu, 22 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2211-08119.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/SedghiOKLMW21, author = {Alireza Sedghi and Lauren J. O'Donnell and Tina Kapur and Erik G. Learned{-}Miller and Parvin Mousavi and William M. Wells III}, title = {Image registration: Maximum likelihood, minimum entropy and deep learning}, journal = {Medical Image Anal.}, volume = {69}, pages = {101939}, year = {2021}, url = {https://doi.org/10.1016/j.media.2020.101939}, doi = {10.1016/J.MEDIA.2020.101939}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/SedghiOKLMW21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/ZhangBCNWOP21, author = {Fan Zhang and Anna Breger and Kang Ik Kevin Cho and Lipeng Ning and Carl{-}Fredrik Westin and Lauren J. O'Donnell and Ofer Pasternak}, title = {Deep learning based segmentation of brain tissue from diffusion {MRI}}, journal = {NeuroImage}, volume = {233}, pages = {117934}, year = {2021}, url = {https://doi.org/10.1016/j.neuroimage.2021.117934}, doi = {10.1016/J.NEUROIMAGE.2021.117934}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/ZhangBCNWOP21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/SchillingRPHNYG21, author = {Kurt G. Schilling and Fran{\c{c}}ois Rheault and Laurent Petit and Colin B. Hansen and Vishwesh Nath and Fang{-}Cheng Yeh and Gabriel Girard and Muhamed Barakovic and Jonathan Rafael{-}Patino and Thomas Yu and Elda Fischi Gomez and Marco Pizzolato and Mario Ocampo{-}Pineda and Simona Schiavi and Erick Jorge Canales{-}Rodr{\'{\i}}guez and Alessandro Daducci and Cristina Granziera and Giorgio M. Innocenti and Jean{-}Philippe Thiran and Laura Mancini and Stephen J. Wastling and Sirio Cocozza and Maria Petracca and Giuseppe Pontillo and Matteo Mancini and Sjoerd B. Vos and Vejay N. Vakharia and John S. Duncan and Helena Melero and Lidia Manzanedo and Emilio Sanz{-}Morales and {\'{A}}ngel Pe{\~{n}}a{-}Meli{\'{a}}n and Fernando Calamante and Arnaud Attye and Ryan P. Cabeen and Laura Korobova and Arthur W. Toga and Anupa Ambili Vijayakumari and Drew Parker and Ragini Verma and Ahmed M. Radwan and Stefan Sunaert and Louise Emsell and Alberto De Luca and Alexander Leemans and Claude J. Bajada and Hamied A. Haroon and Hojjatollah Azadbakht and Maxime Chamberland and Sila Genc and Chantal M. W. Tax and Ping Hong Yeh and Rujirutana Srikanchana and Colin D. Mcknight and Joseph Yuan{-}Mou Yang and Jian Chen and Claire E. Kelly and Chun{-}Hung Yeh and J{\'{e}}r{\^{o}}me Cochereau and Jerome J. Maller and Thomas Welton and Fabien Almairac and Kiran K. Seunarine and Chris A. Clark and Fan Zhang and Nikos Makris and Alexandra J. Golby and Yogesh Rathi and Lauren J. O'Donnell and Yihao Xia and Dogu Baran Aydogan and Yonggang Shi and Francisco Guerreiro Fernandes and Mathijs Raemaekers and Shaun Warrington and Stijn Michielse and Alonso Ramirez{-}Manzanares and Luis Concha and Ram{\'{o}}n Aranda and Mariano Rivera Meraz and Garikoitz Lerma{-}Usabiaga and Lucas Roitman and Lucius S. Fekonja and Navona Calarco and Michael Joseph and Hajer Nakua and Aristotle N. Voineskos and Philippe Karan and Gabrielle Grenier and Jon Haitz Legarreta and Nagesh Adluru and Veena A. Nair and Vivek Prabhakaran and Andrew L. Alexander and Koji Kamagata and Yuya Saito and Wataru Uchida and Christina Andica and Masahiro Abe and Roza G. Bayrak and Claudia A. M. Gandini Wheeler{-}Kingshott and Egidio D'Angelo and Fulvia Palesi and Giovanni Savini and Nicol{\`{o}} Rolandi and Pamela Guevara and Josselin Houenou and Narciso L{\'{o}}pez{-}L{\'{o}}pez and Jean{-}Fran{\c{c}}ois Mangin and Cyril Poupon and Claudio Rom{\'{a}}n and Andrea V{\'{a}}zquez and Chiara Maffei and Mavilde Arantes and Jos{\'{e}} Paulo Andrade and Susana Maria Silva and Vince D. Calhoun and Eduardo Caverzasi and Simone Sacco and Michael Lauricella and Franco Pestilli and Daniel Bullock and Yang Zhan and Edith Brignoni{-}P{\'{e}}rez and Catherine Lebel and Jess E Reynolds and Igor Nestrasil and Ren{\'{e}} Labounek and Christophe Lenglet and Amy Paulson and Stefania Aulicka and Sarah R. Heilbronner and Katja Heuer and Bramsh Qamar Chandio and Javier Guaje and Wei Tang and Eleftherios Garyfallidis and Rajikha Raja and Adam W. Anderson and Bennett A. Landman and Maxime Descoteaux}, title = {Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?}, journal = {NeuroImage}, volume = {243}, pages = {118502}, year = {2021}, url = {https://doi.org/10.1016/j.neuroimage.2021.118502}, doi = {10.1016/J.NEUROIMAGE.2021.118502}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/SchillingRPHNYG21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/LiuZSZOHCC21, author = {Dongnan Liu and Donghao Zhang and Yang Song and Fan Zhang and Lauren O'Donnell and Heng Huang and Mei Chen and Weidong Cai}, title = {{PDAM:} {A} Panoptic-Level Feature Alignment Framework for Unsupervised Domain Adaptive Instance Segmentation in Microscopy Images}, journal = {{IEEE} Trans. Medical Imaging}, volume = {40}, number = {1}, pages = {154--165}, year = {2021}, url = {https://doi.org/10.1109/TMI.2020.3023466}, doi = {10.1109/TMI.2020.3023466}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/LiuZSZOHCC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/apvis/FrankeW0KPORH21, author = {Loraine Franke and Daniel Karl I. Weidele and Fan Zhang and Suheyla Cetin Karayumak and Steve Pieper and Lauren J. O'Donnell and Yogesh Rathi and Daniel Haehn}, title = {FiberStars: Visual Comparison of Diffusion Tractography Data between Multiple Subjects}, booktitle = {14th {IEEE} Pacific Visualization Symposium, PacificVis 2021, Tianjin, China, April 19-21, 2021}, pages = {116--125}, publisher = {{IEEE}}, year = {2021}, url = {https://doi.org/10.1109/PacificVis52677.2021.00023}, doi = {10.1109/PACIFICVIS52677.2021.00023}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/apvis/FrankeW0KPORH21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/ChenSZZOC021, author = {Yuqian Chen and Yang Song and Chaoyi Zhang and Fan Zhang and Lauren O'Donnell and Wojciech Chrzanowski and Weidong Cai}, title = {Celltrack {R-CNN:} {A} Novel End-To-End Deep Neural Network For Cell Segmentation And Tracking In Microscopy Images}, booktitle = {18th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2021, Nice, France, April 13-16, 2021}, pages = {779--782}, publisher = {{IEEE}}, year = {2021}, url = {https://doi.org/10.1109/ISBI48211.2021.9434057}, doi = {10.1109/ISBI48211.2021.9434057}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/ChenSZZOC021.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ChenZSMRCZO21, author = {Yuqian Chen and Chaoyi Zhang and Yang Song and Nikos Makris and Yogesh Rathi and Weidong Cai and Fan Zhang and Lauren J. O'Donnell}, editor = {Marleen de Bruijne and Philippe C. Cattin and St{\'{e}}phane Cotin and Nicolas Padoy and Stefanie Speidel and Yefeng Zheng and Caroline Essert}, title = {Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2021 - 24th International Conference, Strasbourg, France, September 27 - October 1, 2021, Proceedings, Part {VII}}, series = {Lecture Notes in Computer Science}, volume = {12907}, pages = {497--507}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-87234-2\_47}, doi = {10.1007/978-3-030-87234-2\_47}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/ChenZSMRCZO21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2102-10377, author = {Yuqian Chen and Yang Song and Chaoyi Zhang and Fan Zhang and Lauren O'Donnell and Wojciech Chrzanowski and Weidong Cai}, title = {CellTrack {R-CNN:} {A} Novel End-To-End Deep Neural Network for Cell Segmentation and Tracking in Microscopy Images}, journal = {CoRR}, volume = {abs/2102.10377}, year = {2021}, url = {https://arxiv.org/abs/2102.10377}, eprinttype = {arXiv}, eprint = {2102.10377}, timestamp = {Tue, 28 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2102-10377.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2107-04938, author = {Yuqian Chen and Chaoyi Zhang and Yang Song and Nikos Makris and Yogesh Rathi and Tom Weidong Cai and Fan Zhang and Lauren J. O'Donnell}, title = {Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation}, journal = {CoRR}, volume = {abs/2107.04938}, year = {2021}, url = {https://arxiv.org/abs/2107.04938}, eprinttype = {arXiv}, eprint = {2107.04938}, timestamp = {Tue, 28 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2107-04938.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2109-05788, author = {Tiange Xiang and Yang Song and Chaoyi Zhang and Dongnan Liu and Mei Chen and Fan Zhang and Heng Huang and Lauren O'Donnell and Weidong Cai}, title = {DSNet: {A} Dual-Stream Framework for Weakly-Supervised Gigapixel Pathology Image Analysis}, journal = {CoRR}, volume = {abs/2109.05788}, year = {2021}, url = {https://arxiv.org/abs/2109.05788}, eprinttype = {arXiv}, eprint = {2109.05788}, timestamp = {Tue, 28 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2109-05788.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/ZhangKHRGO20, author = {Fan Zhang and Suheyla Cetin Karayumak and Nico Hoffmann and Yogesh Rathi and Alexandra J. Golby and Lauren J. O'Donnell}, title = {Deep white matter analysis (DeepWMA): Fast and consistent tractography segmentation}, journal = {Medical Image Anal.}, volume = {65}, pages = {101761}, year = {2020}, url = {https://doi.org/10.1016/j.media.2020.101761}, doi = {10.1016/J.MEDIA.2020.101761}, timestamp = {Sun, 11 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/ZhangKHRGO20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/ZhangXLMENRKAMG20, author = {Fan Zhang and Guoqiang Xie and Laura Leung and Michael A. Mooney and Lorenz Epprecht and Isaiah Norton and Yogesh Rathi and Ron Kikinis and Ossama Al{-}Mefty and Nikos Makris and Alexandra J. Golby and Lauren J. O'Donnell}, title = {Creation of a novel trigeminal tractography atlas for automated trigeminal nerve identification}, journal = {NeuroImage}, volume = {220}, pages = {117063}, year = {2020}, url = {https://doi.org/10.1016/j.neuroimage.2020.117063}, doi = {10.1016/J.NEUROIMAGE.2020.117063}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/ZhangXLMENRKAMG20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cvpr/LiuZS0OHC020, author = {Dongnan Liu and Donghao Zhang and Yang Song and Fan Zhang and Lauren O'Donnell and Heng Huang and Mei Chen and Weidong Cai}, title = {Unsupervised Instance Segmentation in Microscopy Images via Panoptic Domain Adaptation and Task Re-Weighting}, booktitle = {2020 {IEEE/CVF} Conference on Computer Vision and Pattern Recognition, {CVPR} 2020, Seattle, WA, USA, June 13-19, 2020}, pages = {4242--4251}, publisher = {Computer Vision Foundation / {IEEE}}, year = {2020}, url = {https://openaccess.thecvf.com/content\_CVPR\_2020/html/Liu\_Unsupervised\_Instance\_Segmentation\_in\_Microscopy\_Images\_via\_Panoptic\_Domain\_Adaptation\_CVPR\_2020\_paper.html}, doi = {10.1109/CVPR42600.2020.00430}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cvpr/LiuZS0OHC020.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/IrimiaFCNZJO20, author = {Andrei Irimia and Di Fan and Nikhil N. Chaudhari and Van Ngo and Fan Zhang and Shantanu H. Joshi and Lauren J. O'Donnell}, title = {Mapping Cerebral Connectivity Changes after Mild Traumatic Brain Injury in Older Adults Using Diffusion Tensor Imaging and Riemannian Matching of Elastic Curves}, booktitle = {17th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2020, Iowa City, IA, USA, April 3-7, 2020}, pages = {1690--1693}, publisher = {{IEEE}}, year = {2020}, url = {https://doi.org/10.1109/ISBI45749.2020.9098476}, doi = {10.1109/ISBI45749.2020.9098476}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/IrimiaFCNZJO20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/HaehnFZKPOR20, author = {Daniel Haehn and Loraine Franke and Fan Zhang and Suheyla Cetin Karayumak and Steve Pieper and Lauren J. O'Donnell and Yogesh Rathi}, editor = {Anne L. Martel and Purang Abolmaesumi and Danail Stoyanov and Diana Mateus and Maria A. Zuluaga and S. Kevin Zhou and Daniel Racoceanu and Leo Joskowicz}, title = {{TRAKO:} Efficient Transmission of Tractography Data for Visualization}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020, Proceedings, Part {VII}}, series = {Lecture Notes in Computer Science}, volume = {12267}, pages = {322--332}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-59728-3\_32}, doi = {10.1007/978-3-030-59728-3\_32}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/HaehnFZKPOR20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2004-13630, author = {Daniel Haehn and Loraine Franke and Fan Zhang and Suheyla Cetin Karayumak and Steve Pieper and Lauren O'Donnell and Yogesh Rathi}, title = {{TRAKO:} Efficient Transmission of Tractography Data for Visualization}, journal = {CoRR}, volume = {abs/2004.13630}, year = {2020}, url = {https://arxiv.org/abs/2004.13630}, eprinttype = {arXiv}, eprint = {2004.13630}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2004-13630.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2005-02066, author = {Dongnan Liu and Donghao Zhang and Yang Song and Fan Zhang and Lauren O'Donnell and Heng Huang and Mei Chen and Weidong Cai}, title = {Unsupervised Instance Segmentation in Microscopy Images via Panoptic Domain Adaptation and Task Re-weighting}, journal = {CoRR}, volume = {abs/2005.02066}, year = {2020}, url = {https://arxiv.org/abs/2005.02066}, eprinttype = {arXiv}, eprint = {2005.02066}, timestamp = {Tue, 21 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2005-02066.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2005-08090, author = {Loraine Franke and Daniel Karl I. Weidele and Fan Zhang and Suheyla Cetin Karayumak and Steve Pieper and Lauren J. O'Donnell and Yogesh Rathi and Daniel Haehn}, title = {FiberStars: Visual Comparison of Diffusion Tractography Data between Multiple Subjects}, journal = {CoRR}, volume = {abs/2005.08090}, year = {2020}, url = {https://arxiv.org/abs/2005.08090}, eprinttype = {arXiv}, eprint = {2005.08090}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2005-08090.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/ZhangNOP19, author = {Fan Zhang and Lipeng Ning and Lauren J. O'Donnell and Ofer Pasternak}, title = {MK-curve - Characterizing the relation between mean kurtosis and alterations in the diffusion {MRI} signal}, journal = {NeuroImage}, volume = {196}, pages = {68--80}, year = {2019}, url = {https://doi.org/10.1016/j.neuroimage.2019.04.015}, doi = {10.1016/J.NEUROIMAGE.2019.04.015}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/ZhangNOP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ausai/Zhang0LZWWZXOC19, author = {Donghao Zhang and Yang Song and Dongnan Liu and Chaoyi Zhang and Yicheng Wu and Heng Wang and Fan Zhang and Yong Xia and Lauren J. O'Donnell and Weidong Cai}, editor = {Jixue Liu and James Bailey}, title = {Efficient 3D Depthwise and Separable Convolutions with Dilation for Brain Tumor Segmentation}, booktitle = {{AI} 2019: Advances in Artificial Intelligence - 32nd Australasian Joint Conference, Adelaide, SA, Australia, December 2-5, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11919}, pages = {563--573}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-35288-2\_45}, doi = {10.1007/978-3-030-35288-2\_45}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ausai/Zhang0LZWWZXOC19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/embc/FanCRCLCZOI19, author = {Di Fan and Nikhil N. Chaudhari and Kenneth A. Rostowsky and Maria Calvillo and Sean K. Lee and Nahian F. Chowdhury and Fan Zhang and Lauren J. O'Donnell and Andrei Irimia}, title = {Post-Traumatic Cerebral Microhemorrhages and their Effects Upon White Matter Connectivity in the Aging Human Brain}, booktitle = {41st Annual International Conference of the {IEEE} Engineering in Medicine and Biology Society, {EMBC} 2019, Berlin, Germany, July 23-27, 2019}, pages = {198--203}, publisher = {{IEEE}}, year = {2019}, url = {https://doi.org/10.1109/EMBC.2019.8857921}, doi = {10.1109/EMBC.2019.8857921}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/embc/FanCRCLCZOI19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ijcai/LiuZ0ZZOC19, author = {Dongnan Liu and Donghao Zhang and Yang Song and Chaoyi Zhang and Fan Zhang and Lauren O'Donnell and Weidong Cai}, editor = {Sarit Kraus}, title = {Nuclei Segmentation via a Deep Panoptic Model with Semantic Feature Fusion}, booktitle = {Proceedings of the Twenty-Eighth International Joint Conference on Artificial Intelligence, {IJCAI} 2019, Macao, China, August 10-16, 2019}, pages = {861--868}, publisher = {ijcai.org}, year = {2019}, url = {https://doi.org/10.24963/ijcai.2019/121}, doi = {10.24963/IJCAI.2019/121}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ijcai/LiuZ0ZZOC19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ZhangHKRGO19, author = {Fan Zhang and Nico Hoffmann and Suheyla Cetin Karayumak and Yogesh Rathi and Alexandra J. Golby and Lauren J. O'Donnell}, editor = {Dinggang Shen and Tianming Liu and Terry M. Peters and Lawrence H. Staib and Caroline Essert and Sean Zhou and Pew{-}Thian Yap and Ali R. Khan}, title = {Deep White Matter Analysis: Fast, Consistent Tractography Segmentation Across Populations and dMRI Acquisitions}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2019 - 22nd International Conference, Shenzhen, China, October 13-17, 2019, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {11766}, pages = {599--608}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-32248-9\_67}, doi = {10.1007/978-3-030-32248-9\_67}, timestamp = {Mon, 19 Feb 2024 14:24:13 +0100}, biburl = {https://dblp.org/rec/conf/miccai/ZhangHKRGO19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/ZhangWNMWGSHSCR18, author = {Fan Zhang and Weining Wu and Lipeng Ning and Gloria McAnulty and Deborah P. Waber and Borjan A. Gagoski and Kiera Sarill and Hesham M. Hamoda and Yang Song and Weidong Cai and Yogesh Rathi and Lauren J. O'Donnell}, title = {Suprathreshold fiber cluster statistics: Leveraging white matter geometry to enhance tractography statistical analysis}, journal = {NeuroImage}, volume = {171}, pages = {341--354}, year = {2018}, url = {https://doi.org/10.1016/j.neuroimage.2018.01.006}, doi = {10.1016/J.NEUROIMAGE.2018.01.006}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/ZhangWNMWGSHSCR18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/ZhangSCSRTPKSMV18, author = {Fan Zhang and Peter Savadjiev and Weidong Cai and Yang Song and Yogesh Rathi and Birkan Tun{\c{c}} and Drew Parker and Tina Kapur and Robert T. Schultz and Nikos Makris and Ragini Verma and Lauren J. O'Donnell}, title = {Whole brain white matter connectivity analysis using machine learning: An application to autism}, journal = {NeuroImage}, volume = {172}, pages = {826--837}, year = {2018}, url = {https://doi.org/10.1016/j.neuroimage.2017.10.029}, doi = {10.1016/J.NEUROIMAGE.2017.10.029}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/ZhangSCSRTPKSMV18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/SydnorRLZBKSWMW18, author = {Valerie J. Sydnor and Ana Mar{\'{\i}}a Rivas{-}Grajales and Amanda E. Lyall and Fan Zhang and Sylvain Bouix and Sarina Karmacharya and Martha Elizabeth Shenton and Carl{-}Fredrik Westin and Nikos Makris and Demian Wassermann and Lauren J. O'Donnell and Marek Kubicki}, title = {A comparison of three fiber tract delineation methods and their impact on white matter analysis}, journal = {NeuroImage}, volume = {178}, pages = {318--331}, year = {2018}, url = {https://doi.org/10.1016/j.neuroimage.2018.05.044}, doi = {10.1016/J.NEUROIMAGE.2018.05.044}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/SydnorRLZBKSWMW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/ZhangWNRRMO18, author = {Fan Zhang and Ye Wu and Isaiah Norton and Laura Rigolo and Yogesh Rathi and Nikos Makris and Lauren J. O'Donnell}, title = {An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan}, journal = {NeuroImage}, volume = {179}, pages = {429--447}, year = {2018}, url = {https://doi.org/10.1016/j.neuroimage.2018.06.027}, doi = {10.1016/J.NEUROIMAGE.2018.06.027}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/ZhangWNRRMO18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/Wu0MNNSPRFWO18, author = {Ye Wu and Fan Zhang and Nikos Makris and Yuping Ning and Isaiah Norton and Shenglin She and Hongjun Peng and Yogesh Rathi and Yuanjing Feng and Huawang Wu and Lauren J. O'Donnell}, title = {Investigation into local white matter abnormality in emotional processing and sensorimotor areas using an automatically annotated fiber clustering in major depressive disorder}, journal = {NeuroImage}, volume = {181}, pages = {16--29}, year = {2018}, url = {https://doi.org/10.1016/j.neuroimage.2018.06.019}, doi = {10.1016/J.NEUROIMAGE.2018.06.019}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/Wu0MNNSPRFWO18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iconip/LiuZSZOC18, author = {Dongnan Liu and Donghao Zhang and Yang Song and Fan Zhang and Lauren J. O'Donnell and Weidong Cai}, editor = {Long Cheng and Andrew Chi{-}Sing Leung and Seiichi Ozawa}, title = {3D Large Kernel Anisotropic Network for Brain Tumor Segmentation}, booktitle = {Neural Information Processing - 25th International Conference, {ICONIP} 2018, Siem Reap, Cambodia, December 13-16, 2018, Proceedings, Part {VII}}, series = {Lecture Notes in Computer Science}, volume = {11307}, pages = {444--454}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-04239-4\_40}, doi = {10.1007/978-3-030-04239-4\_40}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iconip/LiuZSZOC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccv/SongZLHOC17, author = {Yang Song and Fan Zhang and Qing Li and Heng Huang and Lauren J. O'Donnell and Weidong Cai}, title = {Locally-Transferred Fisher Vectors for Texture Classification}, booktitle = {{IEEE} International Conference on Computer Vision, {ICCV} 2017, Venice, Italy, October 22-29, 2017}, pages = {4922--4930}, publisher = {{IEEE} Computer Society}, year = {2017}, url = {https://doi.org/10.1109/ICCV.2017.526}, doi = {10.1109/ICCV.2017.526}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iccv/SongZLHOC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/ZhangKSNRSSRCWG17, author = {Fan Zhang and Pegah Kahali and Yannick Suter and Isaiah Norton and Laura Rigolo and Peter Savadjiev and Yang Song and Yogesh Rathi and Tom Weidong Cai and William M. Wells III and Alexandra J. Golby and Lauren J. O'Donnell}, title = {Automated connectivity-based groupwise cortical atlas generation: Application to data of neurosurgical patients with brain tumors for cortical parcellation prediction}, booktitle = {14th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2017, Melbourne, Australia, April 18-21, 2017}, pages = {774--777}, publisher = {{IEEE}}, year = {2017}, url = {https://doi.org/10.1109/ISBI.2017.7950633}, doi = {10.1109/ISBI.2017.7950633}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/ZhangKSNRSSRCWG17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/ZhangNCSWO17, author = {Fan Zhang and Isaiah Norton and Weidong Cai and Yang Song and William M. Wells III and Lauren J. O'Donnell}, title = {Comparison between two white matter segmentation strategies: An investigation into white matter segmentation consistency}, booktitle = {14th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2017, Melbourne, Australia, April 18-21, 2017}, pages = {796--799}, publisher = {{IEEE}}, year = {2017}, url = {https://doi.org/10.1109/ISBI.2017.7950638}, doi = {10.1109/ISBI.2017.7950638}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/ZhangNCSWO17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/OtakeMOYFOWTSCP17, author = {Yoshito Otake and Kohei Miyamoto and Axel Ollivier and Futoshi Yokota and Norio Fukuda and Lauren J. O'Donnell and Carl{-}Fredrik Westin and Masaki Takao and Nobuhiko Sugano and Beom Sun Chung and Jin{-}Seo Park and Yoshinobu Sato}, editor = {Ben Glocker and Jianhua Yao and Tomaz Vrtovec and Alejandro F. Frangi and Guoyan Zheng}, title = {Reconstruction of 3D Muscle Fiber Structure Using High Resolution Cryosectioned Volume}, booktitle = {Computational Methods and Clinical Applications in Musculoskeletal Imaging - 5th International Workshop, {MSKI} 2017, Held in Conjunction with {MICCAI} 2017, Quebec City, QC, Canada, September 10, 2017, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {10734}, pages = {85--94}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-74113-0\_8}, doi = {10.1007/978-3-319-74113-0\_8}, timestamp = {Tue, 11 Oct 2022 14:59:07 +0200}, biburl = {https://dblp.org/rec/conf/miccai/OtakeMOYFOWTSCP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ZhangWNMWGSHSCR17, author = {Fan Zhang and Weining Wu and Lipeng Ning and Gloria McAnulty and Deborah P. Waber and Borjan A. Gagoski and Kiera Sarill and Hesham M. Hamoda and Yang Song and Weidong Cai and Yogesh Rathi and Lauren J. O'Donnell}, editor = {Maxime Descoteaux and Lena Maier{-}Hein and Alfred M. Franz and Pierre Jannin and D. Louis Collins and Simon Duchesne}, title = {Supra-Threshold Fiber Cluster Statistics for Data-Driven Whole Brain Tractography Analysis}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2017 - 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {10433}, pages = {556--565}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-66182-7\_64}, doi = {10.1007/978-3-319-66182-7\_64}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/ZhangWNMWGSHSCR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/OtakeYFTTYOWSS17, author = {Yoshito Otake and Futoshi Yokota and Norio Fukuda and Masaki Takao and Shu Takagi and Naoto Yamamura and Lauren J. O'Donnell and Carl{-}Fredrik Westin and Nobuhiko Sugano and Yoshinobu Sato}, editor = {Maxime Descoteaux and Lena Maier{-}Hein and Alfred M. Franz and Pierre Jannin and D. Louis Collins and Simon Duchesne}, title = {Patient-Specific Skeletal Muscle Fiber Modeling from Structure Tensor Field of Clinical {CT} Images}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2017 - 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {10433}, pages = {656--663}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-66182-7\_75}, doi = {10.1007/978-3-319-66182-7\_75}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/OtakeYFTTYOWSS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cars/ChenTOZMRKNPRGO16, author = {Zhenrui Chen and Yanmei Tie and Olutayo I. Olubiyi and Fan Zhang and Alireza Mehrtash and Laura Rigolo and Pegah Kahali and Isaiah Norton and Ofer Pasternak and Yogesh Rathi and Alexandra J. Golby and Lauren J. O'Donnell}, title = {Corticospinal tract modeling for neurosurgical planning by tracking through regions of peritumoral edema and crossing fibers using two-tensor unscented Kalman filter tractography}, journal = {Int. J. Comput. Assist. Radiol. Surg.}, volume = {11}, number = {8}, pages = {1475--1486}, year = {2016}, url = {https://doi.org/10.1007/s11548-015-1344-5}, doi = {10.1007/S11548-015-1344-5}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cars/ChenTOZMRKNPRGO16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/KapurPFFHOLUPFP16, author = {Tina Kapur and Steve Pieper and Andriy Fedorov and Jean{-}Christophe Fillion{-}Robin and Michael Halle and Lauren O'Donnell and Andras Lasso and Tamas Ungi and Csaba Pinter and Julien Finet and Sonia Pujol and Jagadeesan Jayender and Junichi Tokuda and Isaiah Norton and Ra{\'{u}}l San Jos{\'{e}} Est{\'{e}}par and David T. Gering and Hugo J. W. L. Aerts and Marianna Jakab and Nobuhiko Hata and Luiz Ib{\'{a}}{\~{n}}ez and Daniel J. Blezek and Jim Miller and Stephen R. Aylward and W. Eric L. Grimson and Gabor Fichtinger and William M. Wells III and William E. Lorensen and William J. Schroeder and Ron Kikinis}, title = {Increasing the impact of medical image computing using community-based open-access hackathons: The {NA-MIC} and 3D Slicer experience}, journal = {Medical Image Anal.}, volume = {33}, pages = {176--180}, year = {2016}, url = {https://doi.org/10.1016/j.media.2016.06.035}, doi = {10.1016/J.MEDIA.2016.06.035}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/KapurPFFHOLUPFP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/WestinKPSOWMBOK16, author = {Carl{-}Fredrik Westin and Hans Knutsson and Ofer Pasternak and Filip Szczepankiewicz and Evren {\"{O}}zarslan and Danielle van Westen and Cecilia Mattisson and Mats Bogren and Lauren J. O'Donnell and Marek Kubicki and Daniel Topgaard and Markus Nilsson}, title = {Q-space trajectory imaging for multidimensional diffusion {MRI} of the human brain}, journal = {NeuroImage}, volume = {135}, pages = {345--362}, year = {2016}, url = {https://doi.org/10.1016/j.neuroimage.2016.02.039}, doi = {10.1016/J.NEUROIMAGE.2016.02.039}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/WestinKPSOWMBOK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/ZhangSCSVWO16, author = {Fan Zhang and Peter Savadjiev and Tom Weidong Cai and Yang Song and Ragini Verma and Carl{-}Fredrik Westin and Lauren J. O'Donnell}, title = {Fiber clustering based white matter connectivity analysis for prediction of Autism Spectrum Disorder using diffusion tensor imaging}, booktitle = {13th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2016, Prague, Czech Republic, April 13-16, 2016}, pages = {564--567}, publisher = {{IEEE}}, year = {2016}, url = {https://doi.org/10.1109/ISBI.2016.7493331}, doi = {10.1109/ISBI.2016.7493331}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/ZhangSCSVWO16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/NingLGDDMGZMFSP15, author = {Lipeng Ning and Frederik B. Laun and Yaniv Gur and Edward V. R. DiBella and Samuel Deslauriers{-}Gauthier and Thinhinane Megherbi and Aurobrata Ghosh and Mauro Zucchelli and Gloria Menegaz and Rutger Fick and Samuel St{-}Jean and Michael Paquette and Ram{\'{o}}n Aranda and Maxime Descoteaux and Rachid Deriche and Lauren O'Donnell and Yogesh Rathi}, title = {Sparse Reconstruction Challenge for diffusion {MRI:} Validation on a physical phantom to determine which acquisition scheme and analysis method to use?}, journal = {Medical Image Anal.}, volume = {26}, number = {1}, pages = {316--331}, year = {2015}, url = {https://doi.org/10.1016/j.media.2015.10.012}, doi = {10.1016/J.MEDIA.2015.10.012}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/mia/NingLGDDMGZMFSP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/daglib/p/ODonnellS15, author = {Lauren J. O'Donnell and Thomas Schultz}, editor = {Ingrid Hotz and Thomas Schultz}, title = {Statistical and Machine Learning Methods for Neuroimaging: Examples, Challenges, and Extensions to Diffusion Imaging Data}, booktitle = {Visualization and Processing of Higher Order Descriptors for Multi-Valued Data}, pages = {299--319}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-15090-1\_15}, doi = {10.1007/978-3-319-15090-1\_15}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/daglib/p/ODonnellS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/miccai/2013cdmri, editor = {Thomas Schultz and Gemma L. Nedjati{-}Gilani and Archana Venkataraman and Lauren O'Donnell and Eleftheria Panagiotaki}, title = {Computational Diffusion {MRI} and Brain Connectivity, {MICCAI} Workshops CDMRI/MMBC, Nagoya, Japan, September 22nd, 2013}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-02475-2}, doi = {10.1007/978-3-319-02475-2}, isbn = {978-3-319-02474-5}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/2013cdmri.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/ODonnellGW13, author = {Lauren J. O'Donnell and Alexandra J. Golby and Carl{-}Fredrik Westin}, title = {Fiber clustering versus the parcellation-based connectome}, journal = {NeuroImage}, volume = {80}, pages = {283--289}, year = {2013}, url = {https://doi.org/10.1016/j.neuroimage.2013.04.066}, doi = {10.1016/J.NEUROIMAGE.2013.04.066}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/ODonnellGW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/ODonnellRNWWG12, author = {Lauren J. O'Donnell and Laura Rigolo and Isaiah Norton and William M. Wells III and Carl{-}Fredrik Westin and Alexandra J. Golby}, title = {fMRI-DTI modeling via landmark distance atlases for prediction and detection of fiber tracts}, journal = {NeuroImage}, volume = {60}, number = {1}, pages = {456--470}, year = {2012}, url = {https://doi.org/10.1016/j.neuroimage.2011.11.014}, doi = {10.1016/J.NEUROIMAGE.2011.11.014}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/ODonnellRNWWG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ODonnellWGW12, author = {Lauren J. O'Donnell and William M. Wells III and Alexandra J. Golby and Carl{-}Fredrik Westin}, editor = {Nicholas Ayache and Herv{\'{e}} Delingette and Polina Golland and Kensaku Mori}, title = {Unbiased Groupwise Registration of White Matter Tractography}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2012 - 15th International Conference, Nice, France, October 1-5, 2012, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {7512}, pages = {123--130}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33454-2\_16}, doi = {10.1007/978-3-642-33454-2\_16}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/ODonnellWGW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ODonnellWNWRPG10, author = {Lauren J. O'Donnell and Carl{-}Fredrik Westin and Isaiah Norton and Stephen Whalen and Laura Rigolo and Ruth E. Propper and Alexandra J. Golby}, editor = {Tianzi Jiang and Nassir Navab and Josien P. W. Pluim and Max A. Viergever}, title = {The Fiber Laterality Histogram: {A} New Way to Measure White Matter Asymmetry}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2010, 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {6362}, pages = {225--232}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15745-5\_28}, doi = {10.1007/978-3-642-15745-5\_28}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/ODonnellWNWRPG10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/VoineskosOLMANMPKWS09, author = {Aristotle N. Voineskos and Lauren J. O'Donnell and Nancy J. Lobaugh and Douglas Markant and Stephanie Ameis and Marc Niethammer and Benoit H. Mulsant and Bruce G. Pollock and James L. Kennedy and Carl{-}Fredrik Westin and Martha Elizabeth Shenton}, title = {Quantitative examination of a novel clustering method using magnetic resonance diffusion tensor tractography}, journal = {NeuroImage}, volume = {45}, number = {2}, pages = {370--376}, year = {2009}, url = {https://doi.org/10.1016/j.neuroimage.2008.12.028}, doi = {10.1016/J.NEUROIMAGE.2008.12.028}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/VoineskosOLMANMPKWS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/ODonnellWG09, author = {Lauren J. O'Donnell and Carl{-}Fredrik Westin and Alexandra J. Golby}, title = {Tract-based morphometry for white matter group analysis}, journal = {NeuroImage}, volume = {45}, number = {3}, pages = {832--844}, year = {2009}, url = {https://doi.org/10.1016/j.neuroimage.2008.12.023}, doi = {10.1016/J.NEUROIMAGE.2008.12.023}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/ODonnellWG09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cvpr/QaziKOPRWGW08, author = {Arish A. Qazi and Gordon L. Kindlmann and Lauren O'Donnell and Sharon Peled and Alireza Radmanesh and Stephen Whalen and Alexandra J. Golby and Carl{-}Fredrik Westin}, title = {Two-tensor streamline tractography through white matter intra-voxel fiber crossings: Assessed by fMRI}, booktitle = {{IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} Workshops 2008, Anchorage, AK, USA, 23-28 June, 2008}, pages = {1--8}, publisher = {{IEEE} Computer Society}, year = {2008}, url = {https://doi.org/10.1109/CVPRW.2008.4563001}, doi = {10.1109/CVPRW.2008.4563001}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cvpr/QaziKOPRWGW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/ODonnellW07, author = {Lauren J. O'Donnell and Carl{-}Fredrik Westin}, title = {Automatic Tractography Segmentation Using a High-Dimensional White Matter Atlas}, journal = {{IEEE} Trans. Medical Imaging}, volume = {26}, number = {11}, pages = {1562--1575}, year = {2007}, url = {https://doi.org/10.1109/TMI.2007.906785}, doi = {10.1109/TMI.2007.906785}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/ODonnellW07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ODonnellWG07, author = {Lauren O'Donnell and Carl{-}Fredrik Westin and Alexandra J. Golby}, editor = {Nicholas Ayache and S{\'{e}}bastien Ourselin and Anthony J. Maeder}, title = {Tract-Based Morphometry}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2007, 10th International Conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {4792}, pages = {161--168}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75759-7\_20}, doi = {10.1007/978-3-540-75759-7\_20}, timestamp = {Sun, 02 Jun 2019 21:24:47 +0200}, biburl = {https://dblp.org/rec/conf/miccai/ODonnellWG07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ZiyanSOW07, author = {Ulas Ziyan and Mert R. Sabuncu and Lauren O'Donnell and Carl{-}Fredrik Westin}, editor = {Nicholas Ayache and S{\'{e}}bastien Ourselin and Anthony J. Maeder}, title = {Nonlinear Registration of Diffusion {MR} Images Based on Fiber Bundles}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2007, 10th International Conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {4791}, pages = {351--358}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75757-3\_43}, doi = {10.1007/978-3-540-75757-3\_43}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/ZiyanSOW07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ODonnellW06, author = {Lauren O'Donnell and Carl{-}Fredrik Westin}, editor = {Rasmus Larsen and Mads Nielsen and Jon Sporring}, title = {High-Dimensional White Matter Atlas Generation and Group Analysis}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2006, 9th International Conference, Copenhagen, Denmark, October 1-6, 2006, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {4191}, pages = {243--251}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11866763\_30}, doi = {10.1007/11866763\_30}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/ODonnellW06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ODonnellW05, author = {Lauren O'Donnell and Carl{-}Fredrik Westin}, editor = {James S. Duncan and Guido Gerig}, title = {White Matter Tract Clustering and Correspondence in Populations}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2005, 8th International Conference, Palm Springs, CA, USA, October 26-29, 2005, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {3749}, pages = {140--147}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11566465\_18}, doi = {10.1007/11566465\_18}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/ODonnellW05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ODonnellGW04, author = {Lauren O'Donnell and W. Eric L. Grimson and Carl{-}Fredrik Westin}, editor = {Christian Barillot and David R. Haynor and Pierre Hellier}, title = {Interface Detection in Diffusion Tensor {MRI}}, booktitle = {Medical Image Computing and Computer-Assisted Intervention -- {MICCAI} 2004, 7th International Conference Saint-Malo, France, September 26-29, 2004, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {3216}, pages = {360--367}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30135-6\_44}, doi = {10.1007/978-3-540-30135-6\_44}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/ODonnellGW04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/is4th/WarfieldTKOWWBJK03, author = {Simon K. Warfield and Ion{-}Florin Talos and Corey Kemper and Lauren O'Donnell and Carl{-}Fredrik Westin and William M. Wells III and Peter M. Black and Ferenc A. Jolesz and Ron Kikinis}, editor = {Nicholas Ayache and Herv{\'{e}} Delingette}, title = {Capturing Brain Deformation}, booktitle = {Surgery Simulation and Soft Tissue Modeling, International Symposium, {IS4TM} 2003, Juan-Les-Pins, France, June 12-13, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2673}, pages = {203--217}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-45015-7\_20}, doi = {10.1007/3-540-45015-7\_20}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/is4th/WarfieldTKOWWBJK03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/TalosOWWWYPGMMRGBJK03, author = {Ion{-}Florin Talos and Lauren O'Donnell and Carl{-}Fredrik Westin and Simon K. Warfield and William M. Wells III and Seung{-}Schik Yoo and Lawrence P. Panych and Alexandra J. Golby and Hatsuho Mamata and Stefan S. Maier and Peter Ratiu and Charles R. G. Guttmann and Peter M. Black and Ferenc A. Jolesz and Ron Kikinis}, editor = {Randy E. Ellis and Terry M. Peters}, title = {Diffusion Tensor and Functional {MRI} Fusion with Anatomical {MRI} for Image-Guided Neurosurgery}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2003, 6th International Conference, Montr{\'{e}}al, Canada, November 15-18, 2003, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {2878}, pages = {407--415}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39899-8\_51}, doi = {10.1007/978-3-540-39899-8\_51}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/TalosOWWWYPGMMRGBJK03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ODonnellHW02, author = {Lauren O'Donnell and Steven Haker and Carl{-}Fredrik Westin}, editor = {Takeyoshi Dohi and Ron Kikinis}, title = {New Approaches to Estimation of White Matter Connectivity in Diffusion Tensor {MRI:} Elliptic PDEs and Geodesics in a Tensor-Warped Space}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2002, 5th International Conference, Tokyo, Japan, September 25-28, 2002, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {2488}, pages = {459--466}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45786-0\_57}, doi = {10.1007/3-540-45786-0\_57}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/ODonnellHW02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ODonnellWGRSK01, author = {Lauren O'Donnell and Carl{-}Fredrik Westin and W. Eric L. Grimson and Juan Ruiz{-}Alzola and Martha Elizabeth Shenton and Ron Kikinis}, editor = {Wiro J. Niessen and Max A. Viergever}, title = {Phase-Based User-Steered Image Segmentation}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2001, 4th International Conference, Utrecht, The Netherlands, October 14-17, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2208}, pages = {1022--1030}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-45468-3\_122}, doi = {10.1007/3-540-45468-3\_122}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/ODonnellWGRSK01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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