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ORCIDBibTeX records: Ann-Marie Mallon
@article{DBLP:journals/jbi/FalckZGKVZMGKWSTPRLGNMKON24,
author = {Fabian Falck and
Xuan Zhu and
Sahra Ghalebikesabi and
Matthias Kormaksson and
Marc Vandemeulebroecke and
Cong Zhang and
Ruvie Martin and
Stephen Gardiner and
Chun Hei Kwok and
Dominique M. West and
Luis A. Santos and
Chengeng Tian and
Yu Pang and
Aimee Readie and
Gregory Ligozio and
Kunal K. Gandhi and
Thomas E. Nichols and
Ann{-}Marie Mallon and
Luke J. Kelly and
David Ohlssen and
George Nicholson},
title = {A framework for longitudinal latent factor modelling of treatment
response in clinical trials with applications to Psoriatic Arthritis
and Rheumatoid Arthritis},
journal = {J. Biomed. Informatics},
volume = {154},
pages = {104641},
year = {2024},
url = {https://doi.org/10.1016/j.jbi.2024.104641},
doi = {10.1016/J.JBI.2024.104641},
timestamp = {Fri, 19 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/FalckZGKVZMGKWSTPRLGNMKON24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GrozaLMMGWCFKVMCSWSMP23,
author = {Tudor Groza and
Federico L{\'{o}}pez{-}G{\'{o}}mez and
Hamed Haseli Mashhadi and
Violeta Mu{\~{n}}oz{-}Fuentes and
Osman Nuri G{\"{u}}nes and
Robert J. Wilson and
Pilar Cacheiro and
Anthony Frost and
Piia Keskivali{-}Bond and
Bora Vardal and
Aaron McCoy and
Tsz Kwan Cheng and
Luis A. Santos and
Sara Wells and
Damian Smedley and
Ann{-}Marie Mallon and
Helen E. Parkinson},
title = {The International Mouse Phenotyping Consortium: comprehensive knockout
phenotyping underpinning the study of human disease},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{D1}},
pages = {1038--1045},
year = {2023},
url = {https://doi.org/10.1093/nar/gkac972},
doi = {10.1093/NAR/GKAC972},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GrozaLMMGWCFKVMCSWSMP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/DelbarreSGHMWHN22,
author = {Daniel J. Delbarre and
Luis A. Santos and
Habib Ganjgahi and
Neil R. Horner and
Aaron McCoy and
Henrik Westerberg and
Dieter A. H{\"{a}}ring and
Thomas E. Nichols and
Ann{-}Marie Mallon},
title = {Application of a convolutional neural network to the quality control
of {MRI} defacing},
journal = {Comput. Biol. Medicine},
volume = {151},
number = {Part},
pages = {106211},
year = {2022},
url = {https://doi.org/10.1016/j.compbiomed.2022.106211},
doi = {10.1016/J.COMPBIOMED.2022.106211},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/DelbarreSGHMWHN22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaselimashhadiM20,
author = {Hamed Haselimashhadi and
Jeremy C. Mason and
Violeta Mu{\~{n}}oz{-}Fuentes and
Federico L{\'{o}}pez{-}G{\'{o}}mez and
Kolawole O. Babalola and
Elif F. Acar and
Vivek Kumar and
Jacqui White and
Ann M. Flenniken and
Ruairidh King and
Ewan Straiton and
John Richard Seavitt and
Angelina Gaspero and
Arturo Garza and
Audrey E. Christianson and
Chih{-}Wei Hsu and
Corey L. Reynolds and
Denise G. Lanza and
Isabel Lorenzo and
Jennie R. Green and
Juan J. Gallegos and
Ritu Bohat and
Rodney C. Samaco and
Surabi Veeraragavan and
Jong Kyoung Kim and
Gregor Miller and
Helmut Fuchs and
Lillian Garrett and
Lore Becker and
Yeon Kyung Kang and
David Clary and
Soo Young Cho and
Masaru Tamura and
Nobuhiko Tanaka and
Kyung Dong Soo and
Alexandr Bezginov and
Ghina Bou About and
Marie{-}France Champy and
Laurent Vasseur and
Sophie Leblanc and
Hamid Meziane and
Mohammed Selloum and
Patrick T. Reilly and
Nadine Spielmann and
Holger Maier and
Val{\'{e}}rie Gailus{-}Durner and
Tania Sorg and
Hiroshi Masuya and
Yuichi Obata and
Jason D. Heaney and
Mary E. Dickinson and
Wolfgang Wurst and
Glauco P. Tocchini{-}Valentini and
Kevin C. Kent Lloyd and
Colin McKerlie and
Je Kyung Seong and
Yann Herault and
Martin Hrab{\'{e}} de Angelis and
Steve D. M. Brown and
Damian Smedley and
Paul Flicek and
Ann{-}Marie Mallon and
Helen E. Parkinson and
Terrence F. Meehan},
title = {Soft windowing application to improve analysis of high-throughput
phenotyping data},
journal = {Bioinform.},
volume = {36},
number = {5},
pages = {1492--1500},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz744},
doi = {10.1093/BIOINFORMATICS/BTZ744},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaselimashhadiM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BrownHLFGMRSSTV18,
author = {James M. Brown and
Neil R. Horner and
Thomas N. Lawson and
Tanja Fiegel and
Simon Greenaway and
Hugh Morgan and
Natalie Ring and
Luis A. Santos and
Duncan J. Sneddon and
Lydia Teboul and
Jennifer Vibert and
Gagarine Yaikhom and
Henrik Westerberg and
Ann{-}Marie Mallon},
title = {A bioimage informatics platform for high-throughput embryo phenotyping},
journal = {Briefings Bioinform.},
volume = {19},
number = {1},
pages = {41--51},
year = {2018},
url = {https://doi.org/10.1093/bib/bbw101},
doi = {10.1093/BIB/BBW101},
timestamp = {Thu, 11 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/BrownHLFGMRSSTV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/OellrichCGRSBBG16,
author = {Anika Oellrich and
Nigel Collier and
Tudor Groza and
Dietrich Rebholz{-}Schuhmann and
Nigam Shah and
Olivier Bodenreider and
Mary Regina Boland and
Ivo I. Georgiev and
Hongfang Liu and
Kevin M. Livingston and
Augustin Luna and
Ann{-}Marie Mallon and
Prashanti Manda and
Peter N. Robinson and
Gabriella Rustici and
Michelle Simon and
Liqin Wang and
Rainer Winnenburg and
Michel Dumontier},
title = {The digital revolution in phenotyping},
journal = {Briefings Bioinform.},
volume = {17},
number = {5},
pages = {819--830},
year = {2016},
url = {https://doi.org/10.1093/bib/bbv083},
doi = {10.1093/BIB/BBV083},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/OellrichCGRSBBG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KoscielnyYIMMABCEFFGHKKMMOQRRSSWWWMSBFSMP14,
author = {Gautier Koscielny and
Gagarine Yaikhom and
Vivek Iyer and
Terrence F. Meehan and
Hugh Morgan and
Julian Atienza{-}Herrero and
Andrew Blake and
Chao{-}Kung Chen and
Richard Easty and
Armida Di Fenza and
Tanja Fiegel and
Mark Grifiths and
Alan Horne and
Natasha A. Karp and
Natalja Kurbatova and
Jeremy C. Mason and
Peter Matthews and
Darren J. Oakley and
Asfand Qazi and
Jack Regnart and
Ahmad Retha and
Luis A. Santos and
Duncan J. Sneddon and
Jonathan Warren and
Henrik Westerberg and
Robert J. Wilson and
David G. Melvin and
Damian Smedley and
Steve D. M. Brown and
Paul Flicek and
William C. Skarnes and
Ann{-}Marie Mallon and
Helen E. Parkinson},
title = {The International Mouse Phenotyping Consortium Web Portal, a unified
point of access for knockout mice and related phenotyping data},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {802--809},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt977},
doi = {10.1093/NAR/GKT977},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KoscielnyYIMMABCEFFGHKKMMOQRRSSWWWMSBFSMP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/TravillianABGHMMSP11,
author = {Ravensara S. Travillian and
Tomasz Adamusiak and
Tony Burdett and
Michael Gruenberger and
John M. Hancock and
Ann{-}Marie Mallon and
James Malone and
Paul N. Schofield and
Helen E. Parkinson},
title = {Anatomy ontologies and potential users: bridging the gap},
journal = {J. Biomed. Semant.},
volume = {2},
number = {{S-4}},
pages = {S3},
year = {2011},
url = {http://www.jbiomedsem.com/content/2/S4/S3},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/TravillianABGHMMSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SmedleySCAABBBBBBCCEFGGGHLMMRRRSSTZH10,
author = {Damian Smedley and
Paul N. Schofield and
Chao{-}Kung Chen and
Vassilis Aidinis and
Crysanthi Ainali and
Jonathan B. L. Bard and
Rudi Balling and
Ewan Birney and
Andrew Blake and
Erik Bongcam{-}Rudloff and
Anthony J. Brookes and
Gianni Cesareni and
Christina Chandras and
Janan T. Eppig and
Paul Flicek and
Georgios V. Gkoutos and
Simon Greenaway and
Michael Gruenberger and
Jean{-}Karim H{\'{e}}rich{\'{e}} and
Andrew Lyall and
Ann{-}Marie Mallon and
Dawn Muddyman and
Florian Reisinger and
Martin Ringwald and
Nadia A. Rosenthal and
Klaus Schughart and
Morris A. Swertz and
Gudmundur A. Thorisson and
Michael Zouberakis and
John M. Hancock},
title = {Finding and sharing: new approaches to registries of databases and
services for the biomedical sciences},
journal = {Database J. Biol. Databases Curation},
volume = {2010},
year = {2010},
url = {https://doi.org/10.1093/database/baq014},
doi = {10.1093/DATABASE/BAQ014},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/SmedleySCAABBBBBBCCEFGGGHLMMRRRSSTZH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WilkinsonSMCSUFHMPBMMPRSFLLBTBHMAS10,
author = {Phil Wilkinson and
Jitka Sengerova and
Raffaele Matteoni and
Chao{-}Kung Chen and
Gaetan Soulat and
Abel Ureta{-}Vidal and
Sabine Fessele and
Michael Hagn and
Marzia Massimi and
Karen Pickford and
Richard H. Butler and
Susan Marschall and
Ann{-}Marie Mallon and
Amanda J. Pickard and
Marcello Raspa and
Ferdinando Scavizzi and
Martin Fray and
Vanessa Larrigaldie and
Johan Leyritz and
Ewan Birney and
Glauco P. Tocchini{-}Valentini and
Steve D. M. Brown and
Yann Herault and
Lluis Montoliu and
Martin Hrab{\'{e}} de Angelis and
Damian Smedley},
title = {{EMMA} - mouse mutant resources for the international scientific community},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {570--576},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp799},
doi = {10.1093/NAR/GKP799},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WilkinsonSMCSUFHMPBMMPRSFLLBTBHMAS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MorganBBGADLLMMMRWWWABHM10,
author = {Hugh Morgan and
Tim Beck and
Andrew Blake and
Hilary Gates and
Niels C. Adams and
Guillaume Debouzy and
Sophie Leblanc and
Christoph Lengger and
Holger Maier and
David G. Melvin and
Hamid Meziane and
Dave Richardson and
Sara Wells and
Jacqui White and
Joe Wood and
Martin Hrab{\'{e}} de Angelis and
Steve D. M. Brown and
John M. Hancock and
Ann{-}Marie Mallon},
title = {EuroPhenome: a repository for high-throughput mouse phenotyping data},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {577--585},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp1007},
doi = {10.1093/NAR/GKP1007},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MorganBBGADLLMMMRWWWABHM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlakePGTPWAWBFPWBHM10,
author = {Andrew Blake and
Karen Pickford and
Simon Greenaway and
Steve Thomas and
Amanda J. Pickard and
Christine M. Williamson and
Niels C. Adams and
Alison Walling and
Tim Beck and
Martin Fray and
Jo Peters and
Tom Weaver and
Steve D. M. Brown and
John M. Hancock and
Ann{-}Marie Mallon},
title = {MouseBook: an integrated portal of mouse resources},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {593--599},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp867},
doi = {10.1093/NAR/GKP867},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlakePGTPWAWBFPWBHM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BeckMBWHM09,
author = {Tim Beck and
Hugh Morgan and
Andrew Blake and
Sara Wells and
John M. Hancock and
Ann{-}Marie Mallon},
title = {Practical application of ontologies to annotate and analyse large
scale raw mouse phenotype data},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-5}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S5-S2},
doi = {10.1186/1471-2105-10-S5-S2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BeckMBWHM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MallonBH08,
author = {Ann{-}Marie Mallon and
Andrew Blake and
John M. Hancock},
title = {EuroPhenome and EMPReSS: online mouse phenotyping resource},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {715--718},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm728},
doi = {10.1093/NAR/GKM728},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MallonBH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GkoutosGGBMH05,
author = {Georgios V. Gkoutos and
Eain C. J. Green and
Simon Greenaway and
Andrew Blake and
Ann{-}Marie Mallon and
John M. Hancock},
title = {{CRAVE:} a database, middleware and visualization system for phenotype
ontologies},
journal = {Bioinform.},
volume = {21},
number = {7},
pages = {1257--1262},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti147},
doi = {10.1093/BIOINFORMATICS/BTI147},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GkoutosGGBMH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/GkoutosGMHD04,
author = {Georgios V. Gkoutos and
Eain C. J. Green and
Ann{-}Marie Mallon and
John M. Hancock and
Duncan Davidson},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany A. Jung and
Teri E. Klein},
title = {Building Mouse Phenotype Ontologies},
booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
6-10 January 2004},
pages = {178--189},
publisher = {World Scientific},
year = {2004},
url = {http://psb.stanford.edu/psb-online/proceedings/psb04/gkoutos.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/GkoutosGMHD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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