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ORCIDBibTeX records: Dorrie Main
@article{DBLP:journals/bib/StatonCSWABCFGG21,
author = {Margaret Staton and
Ethalinda Cannon and
Lacey{-}Anne Sanderson and
Jill L. Wegrzyn and
Tavis K. Anderson and
Sean Buehler and
Irene Cobo{-}Sim{\'{o}}n and
Kay Faaberg and
Emily S. Grau and
Valentin Guignon and
Jessica Gunoskey and
Blake Inderski and
Sook Jung and
Kelly Lager and
Dorrie Main and
Monica Poelchau and
Risharde Ramnath and
Peter Richter and
Joe West and
Stephen P. Ficklin},
title = {Tripal, a community update after 10 years of supporting open source,
standards-based genetic, genomic and breeding databases},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab238},
doi = {10.1093/BIB/BBAB238},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/StatonCSWABCFGG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JungCBLHYCHM21,
author = {Sook Jung and
Chun{-}Huai Cheng and
Katheryn Buble and
Taein Lee and
Jodi L. Humann and
Jing Yu and
James Crabb and
Heidi Hough and
Dorrie Main},
title = {Tripal MegaSearch: a tool for interactive and customizable query and
download of big data},
journal = {Database J. Biol. Databases Curation},
volume = {2021},
year = {2021},
url = {https://doi.org/10.1093/database/baab023},
doi = {10.1093/DATABASE/BAAB023},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JungCBLHYCHM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JungLGCYHREHM21,
author = {Sook Jung and
Taein Lee and
Ksenija Gasic and
B. Todd Campbell and
Jing Yu and
Jodi L. Humann and
Sushan Ru and
Daniel Edge{-}Garza and
Heidi Hough and
Dorrie Main},
title = {The Breeding Information Management System {(BIMS):} an online resource
for crop breeding},
journal = {Database J. Biol. Databases Curation},
volume = {2021},
year = {2021},
url = {https://doi.org/10.1093/database/baab054},
doi = {10.1093/DATABASE/BAAB054},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JungLGCYHREHM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SpoorWSCACHHJSW20,
author = {Shawna Spoor and
Connor Wytko and
Brian Soto and
Ming Chen and
Abdullah Almsaeed and
Bradford Condon and
Nic Herndon and
Heidi Hough and
Sook Jung and
Meg Staton and
Jill L. Wegrzyn and
Dorrie Main and
F. Alex Feltus and
Stephen P. Ficklin},
title = {Tripal and Galaxy: supporting reproducible scientific workflows for
community biological databases},
journal = {Database J. Biol. Databases Curation},
volume = {2020},
year = {2020},
url = {https://doi.org/10.1093/database/baaa032},
doi = {10.1093/DATABASE/BAAA032},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SpoorWSCACHHJSW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/FalkHGBRZBRFSFJ19,
author = {Taylor Falk and
Nic Herndon and
Emily S. Grau and
Sean Buehler and
Peter Richter and
Sumaira Zaman and
Eliza M. Baker and
Risharde Ramnath and
Stephen P. Ficklin and
Margaret Staton and
Frank Alex Feltus and
Sook Jung and
Doreen Main and
Jill L. Wegrzyn},
title = {Growing and cultivating the forest genomics database, TreeGenes},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz043},
year = {2019},
url = {https://doi.org/10.1093/database/baz043},
doi = {10.1093/DATABASE/BAZ043},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/FalkHGBRZBRFSFJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SpoorCSCACBRJMB19,
author = {Shawna Spoor and
Chun{-}Huai Cheng and
Lacey{-}Anne Sanderson and
Bradford Condon and
Abdullah Almsaeed and
Ming Chen and
Anthony Bretaudeau and
Helena Rasche and
Sook Jung and
Dorrie Main and
Kirstin E. Bett and
Margaret Staton and
Jill L. Wegrzyn and
F. Alex Feltus and
Stephen P. Ficklin},
title = {Tripal v3: an ontology-based toolkit for construction of {FAIR} biological
community databases},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz077},
year = {2019},
url = {https://doi.org/10.1093/database/baz077},
doi = {10.1093/DATABASE/BAZ077},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SpoorCSCACBRJMB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/BubleJHYCLFHCSW19,
author = {Katheryn Buble and
Sook Jung and
Jodi L. Humann and
Jing Yu and
Chun{-}Huai Cheng and
Taein Lee and
Stephen P. Ficklin and
Heidi Hough and
Bradford Condon and
Margaret E. Staton and
Jill L. Wegrzyn and
Dorrie Main},
title = {Tripal MapViewer: {A} tool for interactive visualization and comparison
of genetic maps},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz100},
year = {2019},
url = {https://doi.org/10.1093/database/baz100},
doi = {10.1093/DATABASE/BAZ100},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/BubleJHYCLFHCSW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JungLCBZYHFGSFR19,
author = {Sook Jung and
Taein Lee and
Chun{-}Huai Cheng and
Katheryn Buble and
Ping Zheng and
Jing Yu and
Jodi L. Humann and
Stephen P. Ficklin and
Ksenija Gasic and
Kristin Scott and
Morgan Frank and
Sushan Ru and
Heidi Hough and
Kate Evans and
Cameron Peace and
Mercy A. Olmstead and
Lisa W. DeVetter and
James McFerson and
Michael Coe and
Jill L. Wegrzyn and
Margaret E. Staton and
Albert G. Abbott and
Dorrie Main},
title = {15 years of {GDR:} New data and functionality in the Genome Database
for Rosaceae},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D1137--D1145},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1000},
doi = {10.1093/NAR/GKY1000},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/JungLCBZYHFGSFR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/FalkHGBRZBRFSFJ18,
author = {Taylor Falk and
Nic Herndon and
Emily S. Grau and
Sean Buehler and
Peter Richter and
Sumaira Zaman and
Eliza M. Baker and
Risharde Ramnath and
Stephen P. Ficklin and
Margaret Staton and
Frank Alex Feltus and
Sook Jung and
Doreen Main and
Jill L. Wegrzyn},
title = {Growing and cultivating the forest genomics database, TreeGenes},
journal = {Database J. Biol. Databases Curation},
volume = {2018},
pages = {bay084},
year = {2018},
url = {https://doi.org/10.1093/database/bay084},
doi = {10.1093/DATABASE/BAY084},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/FalkHGBRZBRFSFJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HarperCCJPWAABB18,
author = {Lisa C. Harper and
Jacqueline D. Campbell and
Ethalinda K. S. Cannon and
Sook Jung and
Monica Poelchau and
Ramona L. Walls and
Carson M. Andorf and
Elizabeth Arnaud and
Tanya Z. Berardini and
Clayton L. Birkett and
Steven B. Cannon and
James D. Carson and
Bradford Condon and
Laurel Cooper and
Nathan A. Dunn and
Christine G. Elsik and
Andrew D. Farmer and
Stephen P. Ficklin and
David M. Grant and
Emily S. Grau and
Nic Herndon and
Zhi{-}Liang Hu and
Jodi L. Humann and
Pankaj Jaiswal and
Cl{\'{e}}ment Jonquet and
Marie{-}Ang{\'{e}}lique Laporte and
Pierre Larmande and
Gerard R. Lazo and
Fiona McCarthy and
Naama Menda and
Christopher J. Mungall and
Monica C. Munoz{-}Torres and
Sushma Naithani and
Rex T. Nelson and
Daureen Nesdill and
Carissa A. Park and
James M. Reecy and
Leonore Reiser and
Lacey{-}Anne Sanderson and
Taner Z. Sen and
Margaret Staton and
Sabarinath Subramaniam and
Marcela Karey Tello{-}Ruiz and
Victor Unda and
Deepak R. Unni and
Liya Wang and
Doreen Ware and
Jill L. Wegrzyn and
Jason Williams and
Margaret Woodhouse and
Jing Yu and
Doreen Main},
title = {AgBioData consortium recommendations for sustainable genomics and
genetics databases for agriculture},
journal = {Database J. Biol. Databases Curation},
volume = {2018},
pages = {bay088},
year = {2018},
url = {https://doi.org/10.1093/database/bay088},
doi = {10.1093/DATABASE/BAY088},
timestamp = {Tue, 25 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/HarperCCJPWAABB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/ssw/HerndonFGJFMSW18,
author = {Nic Herndon and
Taylor Falk and
Emily S. Grau and
Sook Jung and
Stephen P. Ficklin and
Dorrie Main and
Margaret E. Staton and
Jill L. Wegrzyn},
editor = {Anne E. Thessen},
title = {Association Mapping for Forest Trees with CartograTree},
booktitle = {Application of Semantic Technology in Biodiversity Science},
series = {Studies on the Semantic Web},
volume = {33},
pages = {137--149},
publisher = {{IOS} Press},
year = {2018},
url = {https://doi.org/10.3233/978-1-61499-854-9-137},
doi = {10.3233/978-1-61499-854-9-137},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/ssw/HerndonFGJFMSW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JungLCFYHM17,
author = {Sook Jung and
Taein Lee and
Chun{-}Huai Cheng and
Stephen P. Ficklin and
Jing Yu and
Jodi L. Humann and
Dorrie Main},
title = {Extension modules for storage, visualization and querying of genomic,
genetic and breeding data in Tripal databases},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax092},
year = {2017},
url = {https://doi.org/10.1093/database/bax092},
doi = {10.1093/DATABASE/BAX092},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/JungLCFYHM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JungLFYCM16,
author = {Sook Jung and
Taein Lee and
Stephen P. Ficklin and
Jing Yu and
Chun{-}Huai Cheng and
Dorrie Main},
title = {Chado use case: storing genomic, genetic and breeding data of Rosaceae
and Gossypium crops in Chado},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw010},
doi = {10.1093/DATABASE/BAW010},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/JungLFYCM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JungLFYCM16a,
author = {Sook Jung and
Taein Lee and
Stephen P. Ficklin and
Jing Yu and
Chun{-}Huai Cheng and
Dorrie Main},
title = {Chado use case: storing genomic, genetic and breeding data of Rosaceae
and Gossypium crops in Chado},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw058},
doi = {10.1093/DATABASE/BAW058},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JungLFYCM16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YuJCFLZJPM14,
author = {Jing Yu and
Sook Jung and
Chun{-}Huai Cheng and
Stephen P. Ficklin and
Taein Lee and
Ping Zheng and
Don Jones and
Richard G. Percy and
Dorrie Main},
title = {CottonGen: a genomics, genetics and breeding database for cotton research},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {1229--1236},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1064},
doi = {10.1093/NAR/GKT1064},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YuJCFLZJPM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JungFLCBZYBCREPAMOM14,
author = {Sook Jung and
Stephen P. Ficklin and
Taein Lee and
Chun{-}Huai Cheng and
Anna Blenda and
Ping Zheng and
Jing Yu and
Aureliano Bombarely and
Ilhyung Cho and
Sushan Ru and
Kate Evans and
Cameron Peace and
Albert G. Abbott and
Lukas A. Mueller and
Mercy A. Olmstead and
Dorrie Main},
title = {The Genome Database for Rosaceae {(GDR):} year 10 update},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {1237--1244},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1012},
doi = {10.1093/NAR/GKT1012},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/JungFLCBZYBCREPAMOM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/EvansJLBCPM13,
author = {Kate Evans and
Sook Jung and
Taein Lee and
Lisa Brutcher and
Ilhyung Cho and
Cameron Peace and
Dorrie Main},
title = {Addition of a breeding database in the Genome Database for Rosaceae},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bat078},
doi = {10.1093/DATABASE/BAT078},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/EvansJLBCPM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SandersonFCJFBM13,
author = {Lacey{-}Anne Sanderson and
Stephen P. Ficklin and
Chun{-}Huai Cheng and
Sook Jung and
F. Alex Feltus and
Kirstin E. Bett and
Dorrie Main},
title = {Tripal v1.1: a standards-based toolkit for construction of online
genetic and genomic databases},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bat075},
doi = {10.1093/DATABASE/BAT075},
timestamp = {Wed, 05 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/SandersonFCJFBM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/FicklinSCSLCJBM11,
author = {Stephen P. Ficklin and
Lacey{-}Anne Sanderson and
Chun{-}Huai Cheng and
Margaret Staton and
Taein Lee and
Ilhyung Cho and
Sook Jung and
Kirstin E. Bett and
Doreen Main},
title = {Tripal: a construction toolkit for online genome databases},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/bar044},
doi = {10.1093/DATABASE/BAR044},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/FicklinSCSLCJBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JungMRBFBSLLMBCCMM11,
author = {Sook Jung and
Naama Menda and
Seth Redmond and
Robert M. Buels and
Maren Friesen and
Yuri R. Benda{\~{n}}a and
Lacey{-}Anne Sanderson and
Hilmar Lapp and
Taein Lee and
Bob MacCallum and
Kirstin E. Bett and
Scott Cain and
Dave Clements and
Lukas A. Mueller and
Dorrie Main},
title = {The Chado Natural Diversity module: a new generic database schema
for large-scale phenotyping and genotyping data},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/bar051},
doi = {10.1093/DATABASE/BAR051},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JungMRBFBSLLMBCCMM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bmei/LeePJZMC11,
author = {Taein Lee and
Cameron Peace and
Sook Jung and
Ping Zheng and
Dorrie Main and
Ilhyung Cho},
editor = {Yongsheng Ding and
Yonghong Peng and
Riyi Shi and
Kuangrong Hao and
Lipo Wang},
title = {GenSAS - An online integrated genome sequence annotation pipeline},
booktitle = {4th International Conference on Biomedical Engineering and Informatics,
{BMEI} 2011, Shanghai, China, October 15-17, 2011},
pages = {1967--1973},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/BMEI.2011.6098712},
doi = {10.1109/BMEI.2011.6098712},
timestamp = {Wed, 16 Oct 2019 14:14:50 +0200},
biburl = {https://dblp.org/rec/conf/bmei/LeePJZMC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JungSLBSAM08,
author = {Sook Jung and
Margaret Staton and
Taein Lee and
Anna Blenda and
Randall Svancara and
Albert G. Abbott and
Dorrie Main},
title = {{GDR} (Genome Database for Rosaceae): integrated web-database for
Rosaceae genomics and genetics data},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {1034--1040},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm803},
doi = {10.1093/NAR/GKM803},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/JungSLBSAM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JungJSDFCATM04,
author = {Sook Jung and
Christopher Jesudurai and
Margaret Staton and
Zhidian Du and
Stephen P. Ficklin and
Ilhyung Cho and
Albert G. Abbott and
Jeffrey Tomkins and
Dorrie Main},
title = {{GDR} (\emph{G}enome \emph{D}atabase for \emph{R}osaceae): integrated
web resources for Rosaceae genomics and genetics research},
journal = {{BMC} Bioinform.},
volume = {5},
pages = {130},
year = {2004},
url = {https://doi.org/10.1186/1471-2105-5-130},
doi = {10.1186/1471-2105-5-130},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JungJSDFCATM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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