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BibTeX records: Bernhard Knapp

Name: dblp XML data dump
Creator: Schloss Dagstuhl - Leibniz Center for Informatics
Published: 1993
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: dblp, XML, computer science, scholarly publications, metadata

> Home > Persons > Bernhard Knapp

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@article{DBLP:journals/corr/abs-2305-12983,
  author       = {Michael Kranl and
                  Hubert Ramsauer and
                  Bernhard Knapp},
  title        = {Why current rain denoising models fail on CycleGAN created rain images
                  in autonomous driving},
  journal      = {CoRR},
  volume       = {abs/2305.12983},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2305.12983},
  doi          = {10.48550/ARXIV.2305.12983},
  eprinttype    = {arXiv},
  eprint       = {2305.12983},
  timestamp    = {Fri, 26 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2305-12983.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcisd/DemharterKDM19,
  author       = {Samuel Demharter and
                  Bernhard Knapp and
                  Charlotte M. Deane and
                  Peter Minary},
  title        = {{HLA-DM} Stabilizes the Empty {MHCII} Binding Groove: {A} Model Using
                  Customized Natural Move Monte Carlo},
  journal      = {J. Chem. Inf. Model.},
  volume       = {59},
  number       = {6},
  pages        = {2894--2899},
  year         = {2019},
  url          = {https://doi.org/10.1021/acs.jcim.9b00104},
  doi          = {10.1021/ACS.JCIM.9B00104},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/DemharterKDM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/KnappMDD19,
  author       = {Bernhard Knapp and
                  P. Anton van der Merwe and
                  Omer Dushek and
                  Charlotte M. Deane},
  title        = {{MHC} binding affects the dynamics of different T-cell receptors in
                  different ways},
  journal      = {PLoS Comput. Biol.},
  volume       = {15},
  number       = {9},
  year         = {2019},
  url          = {https://doi.org/10.1371/journal.pcbi.1007338},
  doi          = {10.1371/JOURNAL.PCBI.1007338},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/KnappMDD19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/KrawczykDKDM18,
  author       = {Konrad Krawczyk and
                  Samuel Demharter and
                  Bernhard Knapp and
                  Charlotte M. Deane and
                  Peter Minary},
  title        = {In silico structural modeling of multiple epigenetic marks on {DNA}},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {1},
  pages        = {41--48},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/btx516},
  doi          = {10.1093/BIOINFORMATICS/BTX516},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KrawczykDKDM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/KnappAZWMD18,
  author       = {Bernhard Knapp and
                  Marta Alcal{\'{a}} and
                  Hao Zhang and
                  Clare E. West and
                  P. Anton van der Merwe and
                  Charlotte M. Deane},
  title        = {pyHVis3D: visualising molecular simulation deduced H-bond networks
                  in 3D: application to T-cell receptor interactions},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {11},
  pages        = {1941--1943},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/btx842},
  doi          = {10.1093/BIOINFORMATICS/BTX842},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KnappAZWMD18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/DemharterPBFLMO17,
  author       = {Samuel Demharter and
                  Nicholas Pearce and
                  Kylie Beattie and
                  Isabel Frost and
                  Jinwoo Leem and
                  Alistair Martin and
                  Robert Oppenheimer and
                  Cristian Regep and
                  Tammo Rukat and
                  Alexander Skates and
                  Nicola Trendel and
                  David J. Gavaghan and
                  Charlotte M. Deane and
                  Bernhard Knapp},
  title        = {Ten simple rules for surviving an interdisciplinary PhD},
  journal      = {PLoS Comput. Biol.},
  volume       = {13},
  number       = {5},
  year         = {2017},
  url          = {https://doi.org/10.1371/journal.pcbi.1005512},
  doi          = {10.1371/JOURNAL.PCBI.1005512},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/DemharterPBFLMO17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bib/EsmaielbeikiKKN16,
  author       = {Reyhaneh Esmaielbeiki and
                  Konrad Krawczyk and
                  Bernhard Knapp and
                  Jean{-}Christophe Nebel and
                  Charlotte M. Deane},
  title        = {Progress and challenges in predicting protein interfaces},
  journal      = {Briefings Bioinform.},
  volume       = {17},
  number       = {1},
  pages        = {117--131},
  year         = {2016},
  url          = {https://doi.org/10.1093/bib/bbv027},
  doi          = {10.1093/BIB/BBV027},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/EsmaielbeikiKKN16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/KnappDDM16,
  author       = {Bernhard Knapp and
                  Samuel Demharter and
                  Charlotte M. Deane and
                  Peter Minary},
  title        = {Exploring peptide/MHC detachment processes using hierarchical natural
                  move Monte Carlo},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {2},
  pages        = {181--186},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btv502},
  doi          = {10.1093/BIOINFORMATICS/BTV502},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KnappDDM16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcisd/KnappD16,
  author       = {Bernhard Knapp and
                  Charlotte M. Deane},
  title        = {T-Cell Receptor Binding Affects the Dynamics of the Peptide/MHC-I
                  Complex},
  journal      = {J. Chem. Inf. Model.},
  volume       = {56},
  number       = {1},
  pages        = {46--53},
  year         = {2016},
  url          = {https://doi.org/10.1021/acs.jcim.5b00511},
  doi          = {10.1021/ACS.JCIM.5B00511},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/KnappD16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcisd/KrawczykSKDM16,
  author       = {Konrad Krawczyk and
                  Adelene Y. L. Sim and
                  Bernhard Knapp and
                  Charlotte M. Deane and
                  Peter Minary},
  title        = {Tertiary Element Interaction in {HIV-1} {TAR}},
  journal      = {J. Chem. Inf. Model.},
  volume       = {56},
  number       = {9},
  pages        = {1746--1754},
  year         = {2016},
  url          = {https://doi.org/10.1021/acs.jcim.6b00152},
  doi          = {10.1021/ACS.JCIM.6B00152},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/KrawczykSKDM16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bib/KnappDED15,
  author       = {Bernhard Knapp and
                  Samuel Demharter and
                  Reyhaneh Esmaielbeiki and
                  Charlotte M. Deane},
  title        = {Current status and future challenges in T-cell receptor/peptide/MHC
                  molecular dynamics simulations},
  journal      = {Briefings Bioinform.},
  volume       = {16},
  number       = {6},
  pages        = {1035--1044},
  year         = {2015},
  url          = {https://doi.org/10.1093/bib/bbv005},
  doi          = {10.1093/BIB/BBV005},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/KnappDED15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/KnappBBBBCCFGKL15,
  author       = {Bernhard Knapp and
                  R{\'{e}}mi Bardenet and
                  Miguel O. Bernabeu and
                  Rafel Bordas and
                  Maria Bruna and
                  Ben Calderhead and
                  Jonathan Cooper and
                  Alexander G. Fletcher and
                  Derek Groen and
                  Bram Kuijper and
                  Joanna Lewis and
                  Greg J. McInerny and
                  Timo Minssen and
                  James M. Osborne and
                  Verena Paulitschke and
                  Joe Pitt{-}Francis and
                  Jelena Todoric and
                  Christian A. Yates and
                  David Gavaghan and
                  Charlotte M. Deane},
  title        = {Ten Simple Rules for a Successful Cross-Disciplinary Collaboration},
  journal      = {PLoS Comput. Biol.},
  volume       = {11},
  number       = {4},
  year         = {2015},
  url          = {https://doi.org/10.1371/journal.pcbi.1004214},
  doi          = {10.1371/JOURNAL.PCBI.1004214},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/KnappBBBBCCFGKL15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcc/DienDK14,
  author       = {Hung Dien and
                  Charlotte M. Deane and
                  Bernhard Knapp},
  title        = {Gro2mat: {A} package to efficiently read gromacs output in {MATLAB}},
  journal      = {J. Comput. Chem.},
  volume       = {35},
  number       = {20},
  pages        = {1528--1531},
  year         = {2014},
  url          = {https://doi.org/10.1002/jcc.23650},
  doi          = {10.1002/JCC.23650},
  timestamp    = {Wed, 01 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/DienDK14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcisd/WilmanESDK14,
  author       = {Henry R. Wilman and
                  Jean{-}Paul Ebejer and
                  Jiye Shi and
                  Charlotte M. Deane and
                  Bernhard Knapp},
  title        = {Crowdsourcing Yields a New Standard for Kinks in Protein Helices},
  journal      = {J. Chem. Inf. Model.},
  volume       = {54},
  number       = {9},
  pages        = {2585--2593},
  year         = {2014},
  url          = {https://doi.org/10.1021/ci500403a},
  doi          = {10.1021/CI500403A},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/WilmanESDK14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/OsborneBBCCDDFFGKMMPSWYGED14,
  author       = {James M. Osborne and
                  Miguel O. Bernabeu and
                  Maria Bruna and
                  Ben Calderhead and
                  Jonathan Cooper and
                  Neil Dalchau and
                  Sara{-}Jane Dunn and
                  Alexander G. Fletcher and
                  Robin Freeman and
                  Derek Groen and
                  Bernhard Knapp and
                  Greg J. McInerny and
                  Gary R. Mirams and
                  Joe Pitt{-}Francis and
                  Biswa Sengupta and
                  David W. Wright and
                  Christian A. Yates and
                  David Gavaghan and
                  Stephen Emmott and
                  Charlotte M. Deane},
  title        = {Ten Simple Rules for Effective Computational Research},
  journal      = {PLoS Comput. Biol.},
  volume       = {10},
  number       = {3},
  year         = {2014},
  url          = {https://doi.org/10.1371/journal.pcbi.1003506},
  doi          = {10.1371/JOURNAL.PCBI.1003506},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/OsborneBBCCDDFFGKMMPSWYGED14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/KnappDD14a,
  author       = {Bernhard Knapp and
                  James Dunbar and
                  Charlotte M. Deane},
  title        = {Large Scale Characterization of the {LC13} {TCR} and {HLA-B8} Structural
                  Landscape in Reaction to 172 Altered Peptide Ligands: {A} Molecular
                  Dynamics Simulation Study},
  journal      = {PLoS Comput. Biol.},
  volume       = {10},
  number       = {8},
  year         = {2014},
  url          = {https://doi.org/10.1371/journal.pcbi.1003748},
  doi          = {10.1371/JOURNAL.PCBI.1003748},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/KnappDD14a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/DunbarKFSD14,
  author       = {James Dunbar and
                  Bernhard Knapp and
                  Angelika Fuchs and
                  Jiye Shi and
                  Charlotte M. Deane},
  title        = {Examining Variable Domain Orientations in Antigen Receptors Gives
                  Insight into TCR-Like Antibody Design},
  journal      = {PLoS Comput. Biol.},
  volume       = {10},
  number       = {9},
  year         = {2014},
  url          = {https://doi.org/10.1371/journal.pcbi.1003852},
  doi          = {10.1371/JOURNAL.PCBI.1003852},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/DunbarKFSD14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcc/HischenhuberHTHSK13,
  author       = {Birgit Hischenhuber and
                  Hans Havlicek and
                  Jelena Todoric and
                  Sonja H{\"{o}}llrigl{-}Binder and
                  Wolfgang Schreiner and
                  Bernhard Knapp},
  title        = {Differential geometric analysis of alterations in {MH} {\(\alpha\)}-helices},
  journal      = {J. Comput. Chem.},
  volume       = {34},
  number       = {21},
  pages        = {1862--1879},
  year         = {2013},
  url          = {https://doi.org/10.1002/jcc.23328},
  doi          = {10.1002/JCC.23328},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/HischenhuberHTHSK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcc/HischenhuberHTHSK13a,
  author       = {Birgit Hischenhuber and
                  Hans Havlicek and
                  Jelena Todoric and
                  Sonja H{\"{o}}llrigl{-}Binder and
                  Wolfgang Schreiner and
                  Bernhard Knapp},
  title        = {Corrigendum: Differential geometric analysis of alterations in {MH}
                  {\(\alpha\)}-helices},
  journal      = {J. Comput. Chem.},
  volume       = {34},
  number       = {32},
  pages        = {2834},
  year         = {2013},
  url          = {https://doi.org/10.1002/jcc.23453},
  doi          = {10.1002/JCC.23453},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/HischenhuberHTHSK13a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/cmmm/SchreinerKKI12,
  author       = {Wolfgang Schreiner and
                  Rudolf Karch and
                  Bernhard Knapp and
                  Nevena Ilieva},
  title        = {Relaxation Estimation of {RMSD} in Molecular Dynamics Immunosimulations},
  journal      = {Comput. Math. Methods Medicine},
  volume       = {2012},
  pages        = {173521:1--173521:9},
  year         = {2012},
  url          = {https://doi.org/10.1155/2012/173521},
  doi          = {10.1155/2012/173521},
  timestamp    = {Sat, 25 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cmmm/SchreinerKKI12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/cphysics/HischenhuberFSK12,
  author       = {Birgit Hischenhuber and
                  Florian Frommlet and
                  Wolfgang Schreiner and
                  Bernhard Knapp},
  title        = {MH\({}^{\mbox{2}}\)c: Characterization of major histocompatibility
                  {\(\alpha\)}-helices - an information criterion approach},
  journal      = {Comput. Phys. Commun.},
  volume       = {183},
  number       = {7},
  pages        = {1481--1490},
  year         = {2012},
  url          = {https://doi.org/10.1016/j.cpc.2012.02.008},
  doi          = {10.1016/J.CPC.2012.02.008},
  timestamp    = {Fri, 21 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/cphysics/HischenhuberFSK12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/KnappGRS11,
  author       = {Bernhard Knapp and
                  Verena Giczi and
                  Reiner Ribarics and
                  Wolfgang Schreiner},
  title        = {PeptX: Using Genetic Algorithms to optimize peptides for {MHC} binding},
  journal      = {{BMC} Bioinform.},
  volume       = {12},
  pages        = {241},
  year         = {2011},
  url          = {https://doi.org/10.1186/1471-2105-12-241},
  doi          = {10.1186/1471-2105-12-241},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/KnappGRS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/KnappFCSB11,
  author       = {Bernhard Knapp and
                  Sophie Frantal and
                  Michael Cibena and
                  Wolfgang Schreiner and
                  P. Bauer},
  title        = {Is an Intuitive Convergence Definition of Molecular Dynamics Simulations
                  Solely Based on the Root Mean Square Deviation Possible?},
  journal      = {J. Comput. Biol.},
  volume       = {18},
  number       = {8},
  pages        = {997--1005},
  year         = {2011},
  url          = {https://doi.org/10.1089/cmb.2010.0237},
  doi          = {10.1089/CMB.2010.0237},
  timestamp    = {Thu, 12 Jan 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/KnappFCSB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcc/KnappLOS10,
  author       = {Bernhard Knapp and
                  Nadja Lederer and
                  Ulrich Omasits and
                  Wolfgang Schreiner},
  title        = {vmdICE: {A} plug-in for rapid evaluation of molecular dynamics simulations
                  using {VMD}},
  journal      = {J. Comput. Chem.},
  volume       = {31},
  number       = {16},
  pages        = {2868--2873},
  year         = {2010},
  url          = {https://doi.org/10.1002/jcc.21581},
  doi          = {10.1002/JCC.21581},
  timestamp    = {Wed, 01 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/KnappLOS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcamd/KnappOFS09,
  author       = {Bernhard Knapp and
                  Ulrich Omasits and
                  Sophie Frantal and
                  Wolfgang Schreiner},
  title        = {A critical cross-validation of high throughput structural binding
                  prediction methods for pMHC},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {23},
  number       = {5},
  pages        = {301--307},
  year         = {2009},
  url          = {https://doi.org/10.1007/s10822-009-9259-2},
  doi          = {10.1007/S10822-009-9259-2},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/KnappOFS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcisd/RoopraKOS09,
  author       = {Sanjit Roopra and
                  Bernhard Knapp and
                  Ulrich Omasits and
                  Wolfgang Schreiner},
  title        = {jSimMacs for {GROMACS:} {A} Java Application for Advanced Molecular
                  Dynamics Simulations with Remote Access Capability},
  journal      = {J. Chem. Inf. Model.},
  volume       = {49},
  number       = {10},
  pages        = {2412--2417},
  year         = {2009},
  url          = {https://doi.org/10.1021/ci900248f},
  doi          = {10.1021/CI900248F},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/RoopraKOS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

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