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ORCIDBibTeX records: Akira R. Kinjo
@article{DBLP:journals/corr/abs-2303-14366,
author = {Akira R. Kinjo and
Daphne Teck Ching Lai},
title = {Hybrid Fuzzy-Crisp Clustering Algorithm: Theory and Experiments},
journal = {CoRR},
volume = {abs/2303.14366},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.14366},
doi = {10.48550/ARXIV.2303.14366},
eprinttype = {arXiv},
eprint = {2303.14366},
timestamp = {Thu, 13 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-14366.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/VosKMKKKMTYYWAAAABBBBBCCD20,
author = {Rutger A. Vos and
Toshiaki Katayama and
Hiroyuki Mishima and
Shin Kawano and
Shuichi Kawashima and
Jin{-}Dong Kim and
Yuki Moriya and
Toshiaki Tokimatsu and
Atsuko Yamaguchi and
Yasunori Yamamoto and
Hongyan Wu and
Peter Amstutz and
Erick Antezana and
Nobuyuki P. Aoki and
Kazuharu Arakawa and
Jerven T. Bolleman and
Evan E. Bolton and
Raoul Jean Pierre Bonnal and
Hidemasa Bono and
Kees Burger and
Hirokazu Chiba and
Kevin Bretonnel Cohen and
Eric W. Deutsch and
Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis and
Gang Fu and
Takatomo Fujisawa and
Atsushi Fukushima and
Alexander Garc{\'{\i}}a Castro and
Naohisa Goto and
Tudor Groza and
Colin Hercus and
Robert Hoehndorf and
Kotone Itaya and
Nick S. Juty and
Takeshi Kawashima and
Jee{-}Hyub Kim and
Akira R. Kinjo and
Masaaki Kotera and
Kouji Kozaki and
Sadahiro Kumagai and
Tatsuya Kushida and
Thomas L{\"{u}}tteke and
Masaaki Matsubara and
Joe Miyamoto and
Attayeb Mohsen and
Hiroshi Mori and
Yuki Naito and
Takeru Nakazato and
Jeremy NguyenXuan and
Kozo Nishida and
Naoki Nishida and
Hiroyo Nishide and
Soichi Ogishima and
Tazro Ohta and
Shujiro Okuda and
Benedict Paten and
Jean{-}Luc Perret and
Philip Prathipati and
Pjotr Prins and
N{\'{u}}ria Queralt{-}Rosinach and
Daisuke Shinmachi and
Shinya Suzuki and
Tsuyosi Tabata and
Terue Takatsuki and
Kieron R. Taylor and
Mark Thompson and
Ikuo Uchiyama and
Bruno Vieira and
Chih{-}Hsuan Wei and
Mark D. Wilkinson and
Issaku Yamada and
Ryota Yamanaka and
Kazutoshi Yoshitake and
Akiyasu C. Yoshizawa and
Michel Dumontier and
Kenjiro Kosaki and
Toshihisa Takagi},
title = {BioHackathon 2015: Semantics of data for life sciences and reproducible
research},
journal = {F1000Research},
volume = {9},
pages = {136},
year = {2020},
url = {https://doi.org/10.12688/f1000research.18236.1},
doi = {10.12688/F1000RESEARCH.18236.1},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/f1000research/VosKMKKKMTYYWAAAABBBBBCCD20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/KatayamaKMKKKOWWYYAAABBBB19,
author = {Toshiaki Katayama and
Shuichi Kawashima and
Gos Micklem and
Shin Kawano and
Jin{-}Dong Kim and
Simon Kocbek and
Shinobu Okamoto and
Yue Wang and
Hongyan Wu and
Atsuko Yamaguchi and
Yasunori Yamamoto and
Erick Antezana and
Kiyoko F. Aoki{-}Kinoshita and
Kazuharu Arakawa and
Masaki Banno and
Joachim Baran and
Jerven T. Bolleman and
Raoul Jean Pierre Bonnal and
Hidemasa Bono and
Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis and
Robert M. Buels and
Matthew P. Campbell and
Hirokazu Chiba and
Peter J. A. Cock and
Kevin Bretonnel Cohen and
Michel Dumontier and
Takatomo Fujisawa and
Toyofumi Fujiwara and
Leyla J. Garc{\'{\i}}a and
Pascale Gaudet and
Emi Hattori and
Robert Hoehndorf and
Kotone Itaya and
Maori Ito and
Daniel Jamieson and
Simon Jupp and
Nick S. Juty and
Alex Kalderimis and
Fumihiro Kato and
Hideya Kawaji and
Takeshi Kawashima and
Akira R. Kinjo and
Yusuke Komiyama and
Masaaki Kotera and
Tatsuya Kushida and
James Malone and
Masaaki Matsubara and
Satoshi Mizuno and
Sayaka Mizutani and
Hiroshi Mori and
Yuki Moriya and
Katsuhiko Murakami and
Takeru Nakazato and
Hiroyo Nishide and
Yosuke Nishimura and
Soichi Ogishima and
Tazro Ohta and
Shujiro Okuda and
Hiromasa Ono and
Yasset P{\'{e}}rez{-}Riverol and
Daisuke Shinmachi and
Andrea Splendiani and
Francesco Strozzi and
Shinya Suzuki and
Junichi Takehara and
Mark Thompson and
Toshiaki Tokimatsu and
Ikuo Uchiyama and
Karin Verspoor and
Mark D. Wilkinson and
Sarala M. Wimalaratne and
Issaku Yamada and
Nozomi Yamamoto and
Masayuki Yarimizu and
Shoko Kawamoto and
Toshihisa Takagi},
title = {BioHackathon series in 2013 and 2014: improvements of semantic interoperability
in life science data and services},
journal = {F1000Research},
volume = {8},
pages = {1677},
year = {2019},
url = {https://doi.org/10.12688/f1000research.18238.1},
doi = {10.12688/F1000RESEARCH.18238.1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/KatayamaKMKKKOWWYYAAABBBB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlshahraniKMKQH17,
author = {Mona Alshahrani and
Mohammad Asif Khan and
Omar Maddouri and
Akira R. Kinjo and
N{\'{u}}ria Queralt{-}Rosinach and
Robert Hoehndorf},
title = {Neuro-symbolic representation learning on biological knowledge graphs},
journal = {Bioinform.},
volume = {33},
number = {17},
pages = {2723--2730},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx275},
doi = {10.1093/BIOINFORMATICS/BTX275},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlshahraniKMKQH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KinjoBSTKIN17,
author = {Akira R. Kinjo and
Gert{-}Jan Bekker and
Hirofumi Suzuki and
Yuko Tsuchiya and
Takeshi Kawabata and
Yasuyo Ikegawa and
Haruki Nakamura},
title = {Protein Data Bank Japan (PDBj): updated user interfaces, resource
description framework, analysis tools for large structures},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D282--D288},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw962},
doi = {10.1093/NAR/GKW962},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KinjoBSTKIN17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/YokochiKUKIILMN16,
author = {Masashi Yokochi and
Naohiro Kobayashi and
Eldon L. Ulrich and
Akira R. Kinjo and
Takeshi Iwata and
Yannis E. Ioannidis and
Miron Livny and
John L. Markley and
Haruki Nakamura and
Chojiro Kojima and
Toshimichi Fujiwara},
title = {Publication of nuclear magnetic resonance experimental data with semantic
web technology and the application thereof to biomedical research
of proteins},
journal = {J. Biomed. Semant.},
volume = {7},
pages = {16},
year = {2016},
url = {https://doi.org/10.1186/s13326-016-0057-1},
doi = {10.1186/S13326-016-0057-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/YokochiKUKIILMN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/BekkerNK16,
author = {Gert{-}Jan Bekker and
Haruki Nakamura and
Akira R. Kinjo},
title = {Molmil: a molecular viewer for the {PDB} and beyond},
journal = {J. Cheminformatics},
volume = {8},
number = {1},
pages = {42:1--42:5},
year = {2016},
url = {https://doi.org/10.1186/s13321-016-0155-1},
doi = {10.1186/S13321-016-0155-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/BekkerNK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/AlshahraniKMKQH16,
author = {Mona Alshahrani and
Mohammad Asif Khan and
Omar Maddouri and
Akira R. Kinjo and
N{\'{u}}ria Queralt{-}Rosinach and
Robert Hoehndorf},
title = {Neuro-symbolic representation learning on biological knowledge graphs},
journal = {CoRR},
volume = {abs/1612.04256},
year = {2016},
url = {http://arxiv.org/abs/1612.04256},
eprinttype = {arXiv},
eprint = {1612.04256},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/AlshahraniKMKQH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Aoki-KinoshitaK15,
author = {Kiyoko F. Aoki{-}Kinoshita and
Akira R. Kinjo and
Mizuki Morita and
Yoshinobu Igarashi and
Yi{-}an Chen and
Yasumasa Shigemoto and
Takatomo Fujisawa and
Yukie Akune and
Takeo Katoda and
Anna Kokubu and
Takaaki Mori and
Mitsuteru Nakao and
Shuichi Kawashima and
Shinobu Okamoto and
Toshiaki Katayama and
Soichi Ogishima},
title = {Implementation of linked data in the life sciences at BioHackathon
2011},
journal = {J. Biomed. Semant.},
volume = {6},
pages = {3},
year = {2015},
url = {https://doi.org/10.1186/2041-1480-6-3},
doi = {10.1186/2041-1480-6-3},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/Aoki-KinoshitaK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KinjoSYIKIKCSNN12,
author = {Akira R. Kinjo and
Hirofumi Suzuki and
Reiko Yamashita and
Yasuyo Ikegawa and
Takahiro Kudou and
Reiko Igarashi and
Yumiko Kengaku and
Hasumi Cho and
Daron M. Standley and
Atsushi Nakagawa and
Haruki Nakamura},
title = {Protein Data Bank Japan (PDBj): maintaining a structural data archive
and resource description framework format},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {453--460},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr811},
doi = {10.1093/NAR/GKR811},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KinjoSYIKIKCSNN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/KatayamaWV11,
author = {Toshiaki Katayama and
Mark D. Wilkinson and
Rutger A. Vos and
Takeshi Kawashima and
Shuichi Kawashima and
Mitsuteru Nakao and
Yasunori Yamamoto and
Hong{-}Woo Chun and
Atsuko Yamaguchi and
Shin Kawano and
Jan Aerts and
Kiyoko F. Aoki{-}Kinoshita and
Kazuharu Arakawa and
Bruno Aranda and
Raoul Jean Pierre Bonnal and
Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
Takatomo Fujisawa and
Paul M. K. Gordon and
Naohisa Goto and
Syed Haider and
Todd W. Harris and
Takashi Hatakeyama and
Isaac Ho and
Masumi Itoh and
Arek Kasprzyk and
Nobuhiro Kido and
Young{-}Joo Kim and
Akira R. Kinjo and
Fumikazu Konishi and
Yulia Kovarskaya and
Gregory Von Kuster and
Alberto Labarga and
Vachiranee Limviphuvadh and
E. Luke McCarthy and
Yasukazu Nakamura and
Yunsun Nam and
Kozo Nishida and
Kunihiro Nishimura and
Tatsuya Nishizawa and
Soichi Ogishima and
Tom Oinn and
Shinobu Okamoto and
Shujiro Okuda and
Keiichiro Ono and
Kazuki Oshita and
Keun{-}Joon Park and
Nicholas H. Putnam and
Martin Senger and
Jessica Severin and
Yasumasa Shigemoto and
Hideaki Sugawara and
James Taylor and
Oswaldo Trelles and
Chisato Yamasaki and
Riu Yamashita and
Noriyuki Satoh and
Toshihisa Takagi},
title = {The 2nd {DBCLS} BioHackathon: interoperable bioinformatics Web services
for integrated applications},
journal = {J. Biomed. Semant.},
volume = {2},
pages = {4},
year = {2011},
url = {https://doi.org/10.1186/2041-1480-2-4},
doi = {10.1186/2041-1480-2-4},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/KatayamaWV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KinjoYN10,
author = {Akira R. Kinjo and
Reiko Yamashita and
Haruki Nakamura},
title = {PDBj Mine: design and implementation of relational database interface
for Protein Data Bank Japan},
journal = {Database J. Biol. Databases Curation},
volume = {2010},
year = {2010},
url = {https://doi.org/10.1093/database/baq021},
doi = {10.1093/DATABASE/BAQ021},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/KinjoYN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StandleyYKTN10,
author = {Daron M. Standley and
Reiko Yamashita and
Akira R. Kinjo and
Hiroyuki Toh and
Haruki Nakamura},
title = {\emph{SeSAW}: balancing sequence and structural information in protein
functional mapping},
journal = {Bioinform.},
volume = {26},
number = {9},
pages = {1258--1259},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq116},
doi = {10.1093/BIOINFORMATICS/BTQ116},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StandleyYKTN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/KatayamaAN10,
author = {Toshiaki Katayama and
Kazuharu Arakawa and
Mitsuteru Nakao and
Keiichiro Ono and
Kiyoko F. Aoki{-}Kinoshita and
Yasunori Yamamoto and
Atsuko Yamaguchi and
Shuichi Kawashima and
Hong{-}Woo Chun and
Jan Aerts and
Bruno Aranda and
Lord H. Barboza and
Raoul Jean Pierre Bonnal and
Richard M. Bruskiewich and
Jan Christian Bryne and
Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
Akira Funahashi and
Paul M. K. Gordon and
Naohisa Goto and
Andreas Groscurth and
Alex Gutteridge and
Richard C. G. Holland and
Yoshinobu Kano and
Edward A. Kawas and
Arnaud Kerhornou and
Eri Kibukawa and
Akira R. Kinjo and
Michael Kuhn and
Hilmar Lapp and
Heikki Lehv{\"{a}}slaiho and
Hiroyuki Nakamura and
Yasukazu Nakamura and
Tatsuya Nishizawa and
Chikashi Nobata and
Tamotsu Noguchi and
Thomas M. Oinn and
Shinobu Okamoto and
Stuart Owen and
Evangelos Pafilis and
Matthew R. Pocock and
Pjotr Prins and
Ren{\'{e}} Ranzinger and
Florian Reisinger and
Lukasz Salw{\'{\i}}nski and
Mark J. Schreiber and
Martin Senger and
Yasumasa Shigemoto and
Daron M. Standley and
Hideaki Sugawara and
Toshiyuki Tashiro and
Oswaldo Trelles and
Rutger A. Vos and
Mark D. Wilkinson and
William S. York and
Christian M. Zmasek and
Kiyoshi Asai and
Toshihisa Takagi},
title = {The {DBCLS} BioHackathon: standardization and interoperability for
bioinformatics web services and workflows},
journal = {J. Biomed. Semant.},
volume = {1},
pages = {8},
year = {2010},
url = {https://doi.org/10.1186/2041-1480-1-8},
doi = {10.1186/2041-1480-1-8},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/KatayamaAN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/StandleyKKN08,
author = {Daron M. Standley and
Akira R. Kinjo and
Kengo Kinoshita and
Haruki Nakamura},
title = {Protein structure databases with new web services for structural biology
and biomedical research},
journal = {Briefings Bioinform.},
volume = {9},
number = {4},
pages = {276--285},
year = {2008},
url = {https://doi.org/10.1093/bib/bbn015},
doi = {10.1093/BIB/BBN015},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/StandleyKKN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KinjoN06,
author = {Akira R. Kinjo and
Ken Nishikawa},
title = {{CRNPRED:} highly accurate prediction of one-dimensional protein structures
by large-scale critical random networks},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {401},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-401},
doi = {10.1186/1471-2105-7-401},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KinjoN06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KinjoN05,
author = {Akira R. Kinjo and
Ken Nishikawa},
title = {Recoverable one-dimensional encoding of three-dimensional protein
structures},
journal = {Bioinform.},
volume = {21},
number = {10},
pages = {2167--2170},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti330},
doi = {10.1093/BIOINFORMATICS/BTI330},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KinjoN05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KinjoN04,
author = {Akira R. Kinjo and
Ken Nishikawa},
title = {Eigenvalue analysis of amino acid substitution matrices reveals a
sharp transition of the mode of sequence conservation in proteins},
journal = {Bioinform.},
volume = {20},
number = {16},
pages = {2504--2508},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth297},
doi = {10.1093/BIOINFORMATICS/BTH297},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KinjoN04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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