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ORCIDBibTeX records: Sun Kim
@inproceedings{DBLP:conf/aaai/LeeLBK24,
author = {Danyeong Lee and
Dohoon Lee and
Dongmin Bang and
Sun Kim},
editor = {Michael J. Wooldridge and
Jennifer G. Dy and
Sriraam Natarajan},
title = {DiSCO: Diffusion Schr{\"{o}}dinger Bridge for Molecular Conformer
Optimization},
booktitle = {Thirty-Eighth {AAAI} Conference on Artificial Intelligence, {AAAI}
2024, Thirty-Sixth Conference on Innovative Applications of Artificial
Intelligence, {IAAI} 2024, Fourteenth Symposium on Educational Advances
in Artificial Intelligence, {EAAI} 2014, February 20-27, 2024, Vancouver,
Canada},
pages = {13365--13373},
publisher = {{AAAI} Press},
year = {2024},
url = {https://doi.org/10.1609/aaai.v38i12.29238},
doi = {10.1609/AAAI.V38I12.29238},
timestamp = {Tue, 02 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aaai/LeeLBK24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2403-01773,
author = {Yinhua Piao and
Sangseon Lee and
Yijingxiu Lu and
Sun Kim},
title = {Improving out-of-distribution generalization in graphs via hierarchical
semantic environments},
journal = {CoRR},
volume = {abs/2403.01773},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2403.01773},
doi = {10.48550/ARXIV.2403.01773},
eprinttype = {arXiv},
eprint = {2403.01773},
timestamp = {Tue, 02 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2403-01773.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PakLSKK23,
author = {Minwoo Pak and
Sangseon Lee and
Inyoung Sung and
Bonil Koo and
Sun Kim},
title = {Improved drug response prediction by drug target data integration
via network-based profiling},
journal = {Briefings Bioinform.},
volume = {24},
number = {2},
year = {2023},
url = {https://doi.org/10.1093/bib/bbad034},
doi = {10.1093/BIB/BBAD034},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/PakLSKK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GuBYLKK23,
author = {Jeonghyeon Gu and
Dongmin Bang and
Jungseob Yi and
Sangseon Lee and
Dong Kyu Kim and
Sun Kim},
title = {A model-agnostic framework to enhance knowledge graph-based drug combination
prediction with drug-drug interaction data and supervised contrastive
learning},
journal = {Briefings Bioinform.},
volume = {24},
number = {5},
year = {2023},
url = {https://doi.org/10.1093/bib/bbad285},
doi = {10.1093/BIB/BBAD285},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/GuBYLKK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JeongKOKK23,
author = {Dabin Jeong and
Bonil Koo and
Minsik Oh and
Tae{-}Bum Kim and
Sun Kim},
title = {{GOAT:} Gene-level biomarker discovery from multi-Omics data using
graph ATtention neural network for eosinophilic asthma subtype},
journal = {Bioinform.},
volume = {39},
number = {10},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad582},
doi = {10.1093/BIOINFORMATICS/BTAD582},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JeongKOKK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LeeKYK23,
author = {Dohoon Lee and
Bonil Koo and
Jeewon Yang and
Sun Kim},
title = {Metheor: Ultrafast {DNA} methylation heterogeneity calculation from
bisulfite read alignments},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {3},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1010946},
doi = {10.1371/JOURNAL.PCBI.1010946},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/LeeKYK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/KimPK23,
author = {Nayeon Kim and
Yinhua Piao and
Sun Kim},
editor = {Anna Rogers and
Jordan L. Boyd{-}Graber and
Naoaki Okazaki},
title = {Clinical Note Owns its Hierarchy: Multi-Level Hypergraph Neural Networks
for Patient-Level Representation Learning},
booktitle = {Proceedings of the 61st Annual Meeting of the Association for Computational
Linguistics (Volume 1: Long Papers), {ACL} 2023, Toronto, Canada,
July 9-14, 2023},
pages = {5559--5573},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.acl-long.305},
doi = {10.18653/V1/2023.ACL-LONG.305},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/KimPK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/YangLKJK23,
author = {Jeewon Yang and
Dohoon Lee and
Bonil Koo and
Dabin Jeong and
Sun Kim},
editor = {May D. Wang and
Byung{-}Jun Yoon},
title = {Deep learning-based survival prediction using {DNA} methylation-derived
3D genomic information},
booktitle = {Proceedings of the 14th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2023, Houston,
TX, USA, September 3-6, 2023},
pages = {7:1--7:14},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3584371.3612966},
doi = {10.1145/3584371.3612966},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/YangLKJK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2305-09756,
author = {Nayeon Kim and
Yinhua Piao and
Sun Kim},
title = {Clinical Note Owns its Hierarchy: Multi-Level Hypergraph Neural Networks
for Patient-Level Representation Learning},
journal = {CoRR},
volume = {abs/2305.09756},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2305.09756},
doi = {10.48550/ARXIV.2305.09756},
eprinttype = {arXiv},
eprint = {2305.09756},
timestamp = {Wed, 24 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2305-09756.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SungLPSK22,
author = {Inyoung Sung and
Sangseon Lee and
Minwoo Pak and
Yunyol Shin and
Sun Kim},
title = {AutoCoV: tracking the early spread of {COVID-19} in terms of the spatial
and temporal patterns from embedding space by K-mer based deep learning},
journal = {{BMC} Bioinform.},
volume = {23-S},
number = {3},
pages = {149},
year = {2022},
url = {https://doi.org/10.1186/s12859-022-04679-x},
doi = {10.1186/S12859-022-04679-X},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SungLPSK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/KwonKCK22,
author = {Youngchun Kwon and
Sun Kim and
Youn{-}Suk Choi and
Seokho Kang},
title = {Generative Modeling to Predict Multiple Suitable Conditions for Chemical
Reactions},
journal = {J. Chem. Inf. Model.},
volume = {62},
number = {23},
pages = {5952--5960},
year = {2022},
url = {https://doi.org/10.1021/acs.jcim.2c01085},
doi = {10.1021/ACS.JCIM.2C01085},
timestamp = {Tue, 31 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/KwonKCK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MoonLPHK22,
author = {Ji Hwan Moon and
Sangseon Lee and
Minwoo Pak and
Benjamin Hur and
Sun Kim},
title = {{MLDEG:} {A} Machine Learning Approach to Identify Differentially
Expressed Genes Using Network Property and Network Propagation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2356--2364},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3067613},
doi = {10.1109/TCBB.2021.3067613},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MoonLPHK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/PiaoLLK22,
author = {Yinhua Piao and
Sangseon Lee and
Dohoon Lee and
Sun Kim},
title = {Sparse Structure Learning via Graph Neural Networks for Inductive
Document Classification},
booktitle = {Thirty-Sixth {AAAI} Conference on Artificial Intelligence, {AAAI}
2022, Thirty-Fourth Conference on Innovative Applications of Artificial
Intelligence, {IAAI} 2022, The Twelveth Symposium on Educational Advances
in Artificial Intelligence, {EAAI} 2022 Virtual Event, February 22
- March 1, 2022},
pages = {11165--11173},
publisher = {{AAAI} Press},
year = {2022},
url = {https://doi.org/10.1609/aaai.v36i10.21366},
doi = {10.1609/AAAI.V36I10.21366},
timestamp = {Sat, 21 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aaai/PiaoLLK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bigcomp/KimLLCK22,
author = {Jungwoo Kim and
Sangsoo Lim and
Sangseon Lee and
Changyun Cho and
Sun Kim},
editor = {Herwig Unger and
Young{-}Kuk Kim and
Eenjun Hwang and
Sung{-}Bae Cho and
Stephan Pareigis and
Kyandoghere Kyamakya and
Young{-}Guk Ha and
Jinho Kim and
Atsuyuki Morishima and
Christian Wagner and
Hyuk{-}Yoon Kwon and
Yang{-}Sae Moon and
Carson K. Leung},
title = {Embedding of {FDA} Approved Drugs in Chemical Space Using Cascade
Autoencoder with Metric Learning},
booktitle = {{IEEE} International Conference on Big Data and Smart Computing, BigComp
2022, Daegu, Korea, Republic of, January 17-20, 2022},
pages = {363--365},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/BigComp54360.2022.00080},
doi = {10.1109/BIGCOMP54360.2022.00080},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bigcomp/KimLLCK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2205-13279,
author = {MinGyu Choi and
Wonseok Shin and
Yijingxiu Lu and
Sun Kim},
title = {Triangular Contrastive Learning on Molecular Graphs},
journal = {CoRR},
volume = {abs/2205.13279},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2205.13279},
doi = {10.48550/ARXIV.2205.13279},
eprinttype = {arXiv},
eprint = {2205.13279},
timestamp = {Tue, 31 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2205-13279.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2209-07817,
author = {Sangseon Lee and
Dohoon Lee and
Yinhua Piao and
Sun Kim},
title = {{SPGP:} Structure Prototype Guided Graph Pooling},
journal = {CoRR},
volume = {abs/2209.07817},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2209.07817},
doi = {10.48550/ARXIV.2209.07817},
eprinttype = {arXiv},
eprint = {2209.07817},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2209-07817.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/OhPKC21,
author = {Minsik Oh and
Sungjoon Park and
Sun Kim and
Heejoon Chae},
title = {Machine learning-based analysis of multi-omics data on the cloud for
investigating gene regulations},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {66--76},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa032},
doi = {10.1093/BIB/BBAA032},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/OhPKC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/OhPKC21a,
author = {Minsik Oh and
Sungjoon Park and
Sun Kim and
Heejoon Chae},
title = {Erratum to: Machine learning-based analysis of multi-omics data on
the cloud for investigating gene regulations},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {607},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa078},
doi = {10.1093/BIB/BBAA078},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/OhPKC21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LeePK21,
author = {Dohoon Lee and
Youngjune Park and
Sun Kim},
title = {Towards multi-omics characterization of tumor heterogeneity: a comprehensive
review of statistical and machine learning approaches},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa188},
doi = {10.1093/BIB/BBAA188},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LeePK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KangAJOK21,
author = {Hyejin Kang and
Hongryul Ahn and
Kyuri Jo and
Minsik Oh and
Sun Kim},
title = {mirTime: identifying condition-specific targets of microRNA in time-series
transcript data using Gaussian process model and spherical vector
clustering},
journal = {Bioinform.},
volume = {37},
number = {11},
pages = {1544--1553},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btz306},
doi = {10.1093/BIOINFORMATICS/BTZ306},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KangAJOK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkLKLCK21,
author = {Sungjoon Park and
Dohoon Lee and
Youngkuk Kim and
Sangsoo Lim and
Heejoon Chae and
Sun Kim},
title = {BioVLAB-Cancer-Pharmacogenomics: tumor heterogeneity and pharmacogenomics
analysis of multi-omics data from tumor on the cloud},
journal = {Bioinform.},
volume = {38},
number = {1},
pages = {275--277},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab478},
doi = {10.1093/BIOINFORMATICS/BTAB478},
timestamp = {Fri, 21 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkLKLCK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcta/Kim21a,
author = {Sun Kim},
title = {A generalization of the modular equations of higher degrees},
journal = {J. Comb. Theory, Ser. {A}},
volume = {180},
pages = {105420},
year = {2021},
url = {https://doi.org/10.1016/j.jcta.2021.105420},
doi = {10.1016/J.JCTA.2021.105420},
timestamp = {Tue, 09 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcta/Kim21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeeLNK21,
author = {Sangseon Lee and
Taeheon Lee and
Yung{-}Kyun Noh and
Sun Kim},
title = {Ranked k-Spectrum Kernel for Comparative and Evolutionary Comparison
of Exons, Introns, and CpG Islands},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1174--1183},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2938949},
doi = {10.1109/TCBB.2019.2938949},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeeLNK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/IslamajKKL21,
author = {Rezarta Islamaj and
Dongseop Kwon and
Sun Kim and
Zhiyong Lu},
title = {TeamTat: {A} Collaborative Text Annotation Tool for Creating Gold-Standard
Corpora},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t004-1.4626008/t004-1.4626009/3577378-1.4626283/3577172-1.4626280},
timestamp = {Wed, 17 Apr 2024 11:46:53 +0200},
biburl = {https://dblp.org/rec/conf/amia/IslamajKKL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/KimLKNK21,
author = {Inyoung Kim and
Sangseon Lee and
Youngkuk Kim and
Hugh Namkoong and
Sun Kim},
editor = {Yufei Huang and
Lukasz A. Kurgan and
Feng Luo and
Xiaohua Hu and
Yidong Chen and
Edward R. Dougherty and
Andrzej Kloczkowski and
Yaohang Li},
title = {A probabilistic model for pathway-guided gene set selection},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2021, Houston, TX, USA, December 9-12, 2021},
pages = {2733--2740},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/BIBM52615.2021.9669350},
doi = {10.1109/BIBM52615.2021.9669350},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/KimLKNK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bigdataconf/AhnJCOKK21,
author = {Hongryul Ahn and
Inuk Jung and
Heejoon Chae and
Minsik Oh and
Inyoung Kim and
Sun Kim},
editor = {Yixin Chen and
Heiko Ludwig and
Yicheng Tu and
Usama M. Fayyad and
Xingquan Zhu and
Xiaohua Hu and
Suren Byna and
Xiong Liu and
Jianping Zhang and
Shirui Pan and
Vagelis Papalexakis and
Jianwu Wang and
Alfredo Cuzzocrea and
Carlos Ordonez},
title = {{IDEA:} Integrating Divisive and Ensemble-Agglomerate hierarchical
clustering framework for arbitrary shape data},
booktitle = {2021 {IEEE} International Conference on Big Data (Big Data), Orlando,
FL, USA, December 15-18, 2021},
pages = {2791--2800},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/BigData52589.2021.9671953},
doi = {10.1109/BIGDATA52589.2021.9671953},
timestamp = {Fri, 13 Jan 2023 17:06:49 +0100},
biburl = {https://dblp.org/rec/conf/bigdataconf/AhnJCOKK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2104-13216,
author = {Cheng Wang and
Sun Kim and
Taiwoo Park and
Sajal Choudhary and
Sunghyun Park and
Young{-}Bum Kim and
Ruhi Sarikaya and
Sungjin Lee},
title = {Handling Long-Tail Queries with Slice-Aware Conversational Systems},
journal = {CoRR},
volume = {abs/2104.13216},
year = {2021},
url = {https://arxiv.org/abs/2104.13216},
eprinttype = {arXiv},
eprint = {2104.13216},
timestamp = {Fri, 18 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2104-13216.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2112-06386,
author = {Yinhua Piao and
Sangseon Lee and
Dohoon Lee and
Sun Kim},
title = {Sparse Structure Learning via Graph Neural Networks for Inductive
Document Classification},
journal = {CoRR},
volume = {abs/2112.06386},
year = {2021},
url = {https://arxiv.org/abs/2112.06386},
eprinttype = {arXiv},
eprint = {2112.06386},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2112-06386.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LimLJRK20,
author = {Sangsoo Lim and
Sangseon Lee and
Inuk Jung and
SungMin Rhee and
Sun Kim},
title = {Comprehensive and critical evaluation of individualized pathway activity
measurement tools on pan-cancer data},
journal = {Briefings Bioinform.},
volume = {21},
number = {1},
pages = {36--46},
year = {2020},
url = {https://doi.org/10.1093/bib/bby097},
doi = {10.1093/BIB/BBY097},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LimLJRK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeLLSK20,
author = {Sangseon Lee and
Sangsoo Lim and
Taeheon Lee and
Inyoung Sung and
Sun Kim},
title = {Cancer subtype classification and modeling by pathway attention and
propagation},
journal = {Bioinform.},
volume = {36},
number = {12},
pages = {3818--3824},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa203},
doi = {10.1093/BIOINFORMATICS/BTAA203},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeLLSK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/YeganovaKCBWL20,
author = {Lana Yeganova and
Sun Kim and
Qingyu Chen and
Grigory Balasanov and
W. John Wilbur and
Zhiyong Lu},
title = {Better synonyms for enriching biomedical search},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {12},
pages = {1894--1902},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa151},
doi = {10.1093/JAMIA/OCAA151},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/YeganovaKCBWL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ChenDKWL20,
author = {Qingyu Chen and
Jingcheng Du and
Sun Kim and
W. John Wilbur and
Zhiyong Lu},
title = {Deep learning with sentence embeddings pre-trained on biomedical corpora
improves the performance of finding similar sentences in electronic
medical records},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {20-S},
number = {1},
pages = {73},
year = {2020},
url = {https://doi.org/10.1186/s12911-020-1044-0},
doi = {10.1186/S12911-020-1044-0},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/ChenDKWL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DoganKKL20,
author = {Rezarta Islamaj Dogan and
Dongseop Kwon and
Sun Kim and
Zhiyong Lu},
title = {TeamTat: a collaborative text annotation tool},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Webserver-Issue},
pages = {W5--W11},
year = {2020},
url = {https://doi.org/10.1093/nar/gkaa333},
doi = {10.1093/NAR/GKAA333},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/DoganKKL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChenLYKWL20,
author = {Qingyu Chen and
Kyubum Lee and
Shankai Yan and
Sun Kim and
Chih{-}Hsuan Wei and
Zhiyong Lu},
title = {BioConceptVec: Creating and evaluating literature-based biomedical
concept embeddings on a large scale},
journal = {PLoS Comput. Biol.},
volume = {16},
number = {4},
year = {2020},
url = {https://doi.org/10.1371/journal.pcbi.1007617},
doi = {10.1371/JOURNAL.PCBI.1007617},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/ChenLYKWL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/BataaSPKCK20,
author = {Magsarjav Bataa and
Siwoo Song and
Kunsoo Park and
Miran Kim and
Jung Hee Cheon and
Sun Kim},
editor = {Taesung Park and
Young{-}Rae Cho and
Xiaohua Hu and
Illhoi Yoo and
Hyun Goo Woo and
Jianxin Wang and
Julio C. Facelli and
Seungyoon Nam and
Mingon Kang},
title = {Homomorphic Computation of Local Alignment},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2020, Virtual Event, South Korea, December 16-19, 2020},
pages = {2167--2174},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/BIBM49941.2020.9313199},
doi = {10.1109/BIBM49941.2020.9313199},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/BataaSPKCK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2004-11894,
author = {Rezarta Islamaj Dogan and
Dongseop Kwon and
Sun Kim and
Zhiyong Lu},
title = {TeamTat: a collaborative text annotation tool},
journal = {CoRR},
volume = {abs/2004.11894},
year = {2020},
url = {https://arxiv.org/abs/2004.11894},
eprinttype = {arXiv},
eprint = {2004.11894},
timestamp = {Tue, 28 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2004-11894.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/DoganKCWCAMCEPV19,
author = {Rezarta Islamaj Dogan and
Sun Kim and
Andrew Chatr{-}aryamontri and
Chih{-}Hsuan Wei and
Donald C. Comeau and
Rui Antunes and
S{\'{e}}rgio Matos and
Qingyu Chen and
Aparna Elangovan and
Nagesh C. Panyam and
Karin Verspoor and
Hongfang Liu and
Yanshan Wang and
Zhuang Liu and
Berna Altinel and
Zehra Melce H{\"{u}}s{\"{u}}nbeyi and
Arzucan {\"{O}}zg{\"{u}}r and
Aris Fergadis and
Chen{-}Kai Wang and
Hong{-}Jie Dai and
Tung Tran and
Ramakanth Kavuluru and
Ling Luo and
Albert Steppi and
Jinfeng Zhang and
Jinchan Qu and
Zhiyong Lu},
title = {Overview of the BioCreative {VI} Precision Medicine Track: mining
protein interactions and mutations for precision medicine},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {bay147},
year = {2019},
url = {https://doi.org/10.1093/database/bay147},
doi = {10.1093/DATABASE/BAY147},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/DoganKCWCAMCEPV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeLK19,
author = {Do{-}Hoon Lee and
Sangseon Lee and
Sun Kim},
title = {{PRISM:} methylation pattern-based, reference-free inference of subclonal
makeup},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i520--i529},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz327},
doi = {10.1093/BIOINFORMATICS/BTZ327},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeLK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JangSJLKL19,
author = {Yeongjun Jang and
Jihae Seo and
Insu Jang and
Byungwook Lee and
Sun Kim and
Sanghyuk Lee},
title = {CaPSSA: visual evaluation of cancer biomarker genes for patient stratification
and survival analysis using mutation and expression data},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5341--5343},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz516},
doi = {10.1093/BIOINFORMATICS/BTZ516},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JangSJLKL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AhnJCKJK19,
author = {Hongryul Ahn and
Inuk Jung and
Heejoon Chae and
Dongwon Kang and
Woosuk Jung and
Sun Kim},
title = {HTRgene: a computational method to perform the integrated analysis
of multiple heterogeneous time-series data: case analysis of cold
and heat stress response signaling genes in Arabidopsis},
journal = {{BMC} Bioinform.},
volume = {20-S},
number = {16},
pages = {588:1--588:14},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3072-2},
doi = {10.1186/S12859-019-3072-2},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AhnJCKJK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HurKLMLK19,
author = {Benjamin Hur and
Dongwon Kang and
Sangseon Lee and
Ji Hwan Moon and
Gung Lee and
Sun Kim},
title = {Venn-diaNet : venn diagram based network propagation analysis framework
for comparing multiple biological experiments},
journal = {{BMC} Bioinform.},
volume = {20-S},
number = {23},
pages = {667},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3302-7},
doi = {10.1186/S12859-019-3302-7},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HurKLMLK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/ParkKSHHLCK19,
author = {Sungjoon Park and
Minsu Kim and
Seokjun Seo and
Seungwan Hong and
Kyoohyung Han and
Keewoo Lee and
Jung Hee Cheon and
Sun Kim},
title = {A secure {SNP} panel scheme using homomorphically encrypted K-mers
without {SNP} calling on the user side},
journal = {{BMC} Genom.},
volume = {20},
number = {{S2}},
year = {2019},
url = {https://doi.org/10.1186/s12864-019-5473-z},
doi = {10.1186/S12864-019-5473-Z},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcgenomics/ParkKSHHLCK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Allot0KACWL19,
author = {Alexis Allot and
Qingyu Chen and
Sun Kim and
Roberto Vera Alvarez and
Donald C. Comeau and
W. John Wilbur and
Zhiyong Lu},
title = {LitSense: making sense of biomedical literature at sentence level},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Webserver-Issue},
pages = {W594--W599},
year = {2019},
url = {https://doi.org/10.1093/nar/gkz289},
doi = {10.1093/NAR/GKZ289},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Allot0KACWL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChenDKWL19,
author = {Qingyu Chen and
Jingcheng Du and
Sun Kim and
W. John Wilbur and
Zhiyong Lu},
editor = {Xinghua Mindy Shi and
Michael Buck and
Jian Ma and
Pierangelo Veltri},
title = {Evaluation of Five Sentence Similarity Models on Electronic Medical
Records},
booktitle = {Proceedings of the 10th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, {BCB} 2019, Niagara
Falls, NY, USA, September 7-10, 2019},
pages = {533},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3307339.3343239},
doi = {10.1145/3307339.3343239},
timestamp = {Fri, 03 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ChenDKWL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bigcomp/AhnSK19,
author = {Hongryul Ahn and
Seunghyun Son and
Sun Kim},
title = {DeepFunNet: Deep Learning for Gene Functional Similarity Network Construction},
booktitle = {{IEEE} International Conference on Big Data and Smart Computing, BigComp
2019, Kyoto, Japan, February 27 - March 2, 2019},
pages = {1--8},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/BIGCOMP.2019.8679374},
doi = {10.1109/BIGCOMP.2019.8679374},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bigcomp/AhnSK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1909-03044,
author = {Qingyu Chen and
Jingcheng Du and
Sun Kim and
W. John Wilbur and
Zhiyong Lu},
title = {Deep learning with sentence embeddings pre-trained on biomedical corpora
improves the performance of finding similar sentences in electronic
medical records},
journal = {CoRR},
volume = {abs/1909.03044},
year = {2019},
url = {http://arxiv.org/abs/1909.03044},
eprinttype = {arXiv},
eprint = {1909.03044},
timestamp = {Fri, 03 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1909-03044.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1912-10846,
author = {Qingyu Chen and
Kyubum Lee and
Shankai Yan and
Sun Kim and
Chih{-}Hsuan Wei and
Zhiyong Lu},
title = {BioConceptVec: creating and evaluating literature-based biomedical
concept embeddings on a large scale},
journal = {CoRR},
volume = {abs/1912.10846},
year = {2019},
url = {http://arxiv.org/abs/1912.10846},
eprinttype = {arXiv},
eprint = {1912.10846},
timestamp = {Fri, 03 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1912-10846.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeoOPK18,
author = {Seokjun Seo and
Minsik Oh and
Youngjune Park and
Sun Kim},
title = {DeepFam: deep learning based alignment-free method for protein family
modeling and prediction},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i254--i262},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty275},
doi = {10.1093/BIOINFORMATICS/BTY275},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeoOPK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimCK18,
author = {Inyoung Kim and
Saemi Choi and
Sun Kim},
title = {BRCA-Pathway: a structural integration and visualization system of
{TCGA} breast cancer data on {KEGG} pathways},
journal = {{BMC} Bioinform.},
volume = {19-S},
number = {1},
pages = {63--72},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2016-6},
doi = {10.1186/S12859-018-2016-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimCK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YeganovaKBW18,
author = {Lana Yeganova and
Sun Kim and
Grigory Balasanov and
W. John Wilbur},
title = {Discovering themes in biomedical literature using a projection-based
algorithm},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {269:1--269:12},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2240-0},
doi = {10.1186/S12859-018-2240-0},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YeganovaKBW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JungKKCKJ18,
author = {Inuk Jung and
Hyejin Kang and
Jang Uk Kim and
Hyeonsook Chang and
Sun Kim and
Woosuk Jung},
title = {The mRNA and miRNA transcriptomic landscape of Panax ginseng under
the high ambient temperature},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {117--130},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0548-z},
doi = {10.1186/S12918-018-0548-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JungKKCKJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ChoiPKC18,
author = {Joungmin Choi and
Yoonjae Park and
Sun Kim and
Heejoon Chae},
title = {Cloud-BS: {A} MapReduce-based bisulfite sequencing aligner on cloud},
journal = {J. Bioinform. Comput. Biol.},
volume = {16},
number = {6},
pages = {1840028:1--1840028:10},
year = {2018},
url = {https://doi.org/10.1142/S0219720018400280},
doi = {10.1142/S0219720018400280},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/ChoiPKC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KwonKWLL18,
author = {Dongseop Kwon and
Sun Kim and
Chih{-}Hsuan Wei and
Robert Leaman and
Zhiyong Lu},
title = {ezTag: tagging biomedical concepts via interactive learning},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Webserver-Issue},
pages = {W523--W529},
year = {2018},
url = {https://doi.org/10.1093/nar/gky428},
doi = {10.1093/NAR/GKY428},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KwonKWLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tamm/BerndtKZ18,
author = {Bruce C. Berndt and
Sun Kim and
Alexandru Zaharescu},
title = {The Circle Problem of Gauss and the Divisor Problem of Dirichlet -
Still Unsolved},
journal = {Am. Math. Mon.},
volume = {125},
number = {2},
pages = {99--114},
year = {2018},
url = {https://doi.org/10.1080/00029890.2018.1401853},
doi = {10.1080/00029890.2018.1401853},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tamm/BerndtKZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Kim18,
author = {Sun Kim},
title = {Editorial for Selected Papers of a Joint Conferences, Genome Informatics
Workshop/International Conference on Bioinformatics (GIW/InCoB) 2015},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {15},
number = {6},
pages = {1821},
year = {2018},
url = {https://doi.org/10.1109/TCBB.2018.2880126},
doi = {10.1109/TCBB.2018.2880126},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Kim18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChenKWL18,
author = {Qingyu Chen and
Sun Kim and
W. John Wilbur and
Zhiyong Lu},
editor = {Amarda Shehu and
Cathy H. Wu and
Christina Boucher and
Jing Li and
Hongfang Liu and
Mihai Pop},
title = {Sentence Similarity Measures Revisited: Ranking Sentences in PubMed
Documents},
booktitle = {Proceedings of the 2018 {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2018, Washington,
DC, USA, August 29 - September 01, 2018},
pages = {531--532},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3233547.3233640},
doi = {10.1145/3233547.3233640},
timestamp = {Fri, 03 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ChenKWL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/AhnJCKJK18,
author = {Hongryul Ahn and
Inuk Jung and
Heejoon Chae and
Dongwon Kang and
Woosuk Jung and
Sun Kim},
editor = {Huiru Jane Zheng and
Zoraida Callejas and
David Griol and
Haiying Wang and
Xiaohua Hu and
Harald H. H. W. Schmidt and
Jan Baumbach and
Julie Dickerson and
Le Zhang},
title = {HTRgene: Integrating Multiple Heterogeneous Time-series Data to Investigate
Cold and Heat Stress Response Signaling Genes in Arabidopsis},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2018, Madrid, Spain, December 3-6, 2018},
pages = {393--398},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.ieeecomputersociety.org/10.1109/BIBM.2018.8621290},
doi = {10.1109/BIBM.2018.8621290},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/AhnJCKJK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/KangALLHJK18,
author = {Dongwon Kang and
Hongryul Ahn and
Sangseon Lee and
Chai{-}Jin Lee and
Jihye Hur and
Woosuk Jung and
Sun Kim},
editor = {Huiru Jane Zheng and
Zoraida Callejas and
David Griol and
Haiying Wang and
Xiaohua Hu and
Harald H. H. W. Schmidt and
Jan Baumbach and
Julie Dickerson and
Le Zhang},
title = {Identifying stress-related genes and predicting stress types in Arabidopsis
using logical correlation layer and {CMCL} loss through time-series
data},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2018, Madrid, Spain, December 3-6, 2018},
pages = {399--404},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.ieeecomputersociety.org/10.1109/BIBM.2018.8621581},
doi = {10.1109/BIBM.2018.8621581},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/KangALLHJK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/RheeSK18,
author = {SungMin Rhee and
Seokjun Seo and
Sun Kim},
editor = {J{\'{e}}r{\^{o}}me Lang},
title = {Hybrid Approach of Relation Network and Localized Graph Convolutional
Filtering for Breast Cancer Subtype Classification},
booktitle = {Proceedings of the Twenty-Seventh International Joint Conference on
Artificial Intelligence, {IJCAI} 2018, July 13-19, 2018, Stockholm,
Sweden},
pages = {3527--3534},
publisher = {ijcai.org},
year = {2018},
url = {https://doi.org/10.24963/ijcai.2018/490},
doi = {10.24963/IJCAI.2018/490},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ijcai/RheeSK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/www/MohanFKL18,
author = {Sunil Mohan and
Nicolas Fiorini and
Sun Kim and
Zhiyong Lu},
editor = {Pierre{-}Antoine Champin and
Fabien Gandon and
Mounia Lalmas and
Panagiotis G. Ipeirotis},
title = {A Fast Deep Learning Model for Textual Relevance in Biomedical Information
Retrieval},
booktitle = {Proceedings of the 2018 World Wide Web Conference on World Wide Web,
{WWW} 2018, Lyon, France, April 23-27, 2018},
pages = {77--86},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3178876.3186049},
doi = {10.1145/3178876.3186049},
timestamp = {Fri, 16 Apr 2021 10:04:12 +0200},
biburl = {https://dblp.org/rec/conf/www/MohanFKL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1802-10078,
author = {Sunil Mohan and
Nicolas Fiorini and
Sun Kim and
Zhiyong Lu},
title = {A Fast Deep Learning Model for Textual Relevance in Biomedical Information
Retrieval},
journal = {CoRR},
volume = {abs/1802.10078},
year = {2018},
url = {http://arxiv.org/abs/1802.10078},
eprinttype = {arXiv},
eprint = {1802.10078},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1802-10078.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/DoganKCCO17,
author = {Rezarta Islamaj Dogan and
Sun Kim and
Andrew Chatr{-}aryamontri and
Christie S. Chang and
Rose Oughtred and
Jennifer M. Rust and
W. John Wilbur and
Donald C. Comeau and
Kara Dolinski and
Mike Tyers},
title = {The BioC-BioGRID corpus: full text articles annotated for curation
of protein-protein and genetic interactions},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw147},
year = {2017},
url = {https://doi.org/10.1093/database/baw147},
doi = {10.1093/DATABASE/BAW147},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/DoganKCCO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JungJKAYK17,
author = {Inuk Jung and
Kyuri Jo and
Hyejin Kang and
Hongryul Ahn and
Youngjae Yu and
Sun Kim},
title = {TimesVector: a vectorized clustering approach to the analysis of time
series transcriptome data from multiple phenotypes},
journal = {Bioinform.},
volume = {33},
number = {23},
pages = {3827--3835},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btw780},
doi = {10.1093/BIOINFORMATICS/BTW780},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JungJKAYK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MoonLJLSK17,
author = {Ji Hwan Moon and
Sangsoo Lim and
Kyuri Jo and
Sangseon Lee and
Seokjun Seo and
Sun Kim},
title = {PINTnet: construction of condition-specific pathway interaction network
by computing shortest paths on weighted {PPI}},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-2}},
pages = {15:1--15:13},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0387-3},
doi = {10.1186/S12918-017-0387-3},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MoonLJLSK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijdmb/RheeLK17,
author = {SungMin Rhee and
Sangsoo Lim and
Sun Kim},
title = {Iterative segmented least square method for functional microRNA-mRNA
module discovery in breast cancer},
journal = {Int. J. Data Min. Bioinform.},
volume = {17},
number = {1},
pages = {25--41},
year = {2017},
url = {https://doi.org/10.1504/IJDMB.2017.10004925},
doi = {10.1504/IJDMB.2017.10004925},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijdmb/RheeLK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/KimFWL17,
author = {Sun Kim and
Nicolas Fiorini and
W. John Wilbur and
Zhiyong Lu},
title = {Bridging the gap: Incorporating a semantic similarity measure for
effectively mapping PubMed queries to documents},
journal = {J. Biomed. Informatics},
volume = {75},
pages = {122--127},
year = {2017},
url = {https://doi.org/10.1016/j.jbi.2017.09.014},
doi = {10.1016/J.JBI.2017.09.014},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/KimFWL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bigcomp/LeeMPK17,
author = {Sangseon Lee and
Ji Hwan Moon and
Youngjune Park and
Sun Kim},
title = {Flow maximization analysis of cell cycle pathway activation status
in breast cancer subtypes},
booktitle = {2017 {IEEE} International Conference on Big Data and Smart Computing,
BigComp 2017, Jeju Island, South Korea, February 13-16, 2017},
pages = {91--95},
publisher = {{IEEE}},
year = {2017},
url = {https://doi.org/10.1109/BIGCOMP.2017.7881721},
doi = {10.1109/BIGCOMP.2017.7881721},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bigcomp/LeeMPK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bigcomp/AhnCJK17,
author = {Hongryul Ahn and
Heejoon Chae and
Woosuk Jung and
Sun Kim},
title = {Integration of heterogeneous time series gene expression data by clustering
on time dimension},
booktitle = {2017 {IEEE} International Conference on Big Data and Smart Computing,
BigComp 2017, Jeju Island, South Korea, February 13-16, 2017},
pages = {332--335},
publisher = {{IEEE}},
year = {2017},
url = {https://doi.org/10.1109/BIGCOMP.2017.7881688},
doi = {10.1109/BIGCOMP.2017.7881688},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bigcomp/AhnCJK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/DoganCKWPCL17,
author = {Rezarta Islamaj Dogan and
Andrew Chatr{-}aryamontri and
Sun Kim and
Chih{-}Hsuan Wei and
Yifan Peng and
Donald C. Comeau and
Zhiyong Lu},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Junichi Tsujii},
title = {BioCreative {VI} Precision Medicine Track: creating a training corpus
for mining protein-protein interactions affected by mutations},
booktitle = {BioNLP 2017, Vancouver, Canada, August 4, 2017},
pages = {171--175},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/W17-2321},
doi = {10.18653/V1/W17-2321},
timestamp = {Fri, 06 Aug 2021 00:41:21 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/DoganCKWPCL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MohanFKL17,
author = {Sunil Mohan and
Nicolas Fiorini and
Sun Kim and
Zhiyong Lu},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Junichi Tsujii},
title = {Deep Learning for Biomedical Information Retrieval: Learning Textual
Relevance from Click Logs},
booktitle = {BioNLP 2017, Vancouver, Canada, August 4, 2017},
pages = {222--231},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/W17-2328},
doi = {10.18653/V1/W17-2328},
timestamp = {Tue, 20 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/MohanFKL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1711-05859,
author = {SungMin Rhee and
Seokjun Seo and
Sun Kim},
title = {Hybrid Approach of Relation Network and Localized Graph Convolutional
Filtering for Breast Cancer Subtype Classification},
journal = {CoRR},
volume = {abs/1711.05859},
year = {2017},
url = {http://arxiv.org/abs/1711.05859},
eprinttype = {arXiv},
eprint = {1711.05859},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1711-05859.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KimDCCORBCAMSCO16,
author = {Sun Kim and
Rezarta Islamaj Dogan and
Andrew Chatr{-}aryamontri and
Christie S. Chang and
Rose Oughtred and
Jennifer M. Rust and
Riza Batista{-}Navarro and
Jacob Carter and
Sophia Ananiadou and
S{\'{e}}rgio Matos and
Andr{\'{e}} Santos and
David Campos and
Jos{\'{e}} Lu{\'{\i}}s Oliveira and
Onkar Singh and
Jitendra Jonnagaddala and
Hong{-}Jie Dai and
Emily Chia{-}Yu Su and
Yung{-}Chun Chang and
Yu{-}Chen Su and
Chun{-}Han Chu and
Chien Chin Chen and
Wen{-}Lian Hsu and
Yifan Peng and
Cecilia N. Arighi and
Cathy H. Wu and
K. Vijay{-}Shanker and
Ferhat Aydin and
Zehra Melce H{\"{u}}s{\"{u}}nbeyi and
Arzucan {\"{O}}zg{\"{u}}r and
Soo{-}Yong Shin and
Dongseop Kwon and
Kara Dolinski and
Mike Tyers and
W. John Wilbur and
Donald C. Comeau},
title = {BioCreative {V} BioC track overview: collaborative biocurator assistant
task for BioGRID},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw121},
doi = {10.1093/DATABASE/BAW121},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/KimDCCORBCAMSCO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ShinKWK16,
author = {Soo{-}Yong Shin and
Sun Kim and
W. John Wilbur and
Dongseop Kwon},
title = {BioC viewer: a web-based tool for displaying and merging annotations
in BioC},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw106},
doi = {10.1093/DATABASE/BAW106},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ShinKWK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JoJMK16,
author = {Kyuri Jo and
Inuk Jung and
Ji Hwan Moon and
Sun Kim},
title = {Influence maximization in time bounded network identifies transcription
factors regulating perturbed pathways},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {128--136},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw275},
doi = {10.1093/BIOINFORMATICS/BTW275},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JoJMK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimYW16,
author = {Sun Kim and
Lana Yeganova and
W. John Wilbur},
title = {\emph{Meshable}: searching PubMed abstracts by utilizing MeSH and
MeSH-derived topical terms},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3044--3046},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw331},
doi = {10.1093/BIOINFORMATICS/BTW331},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimYW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeJLKK16,
author = {Jusang Lee and
Kyuri Jo and
Sunwon Lee and
Jaewoo Kang and
Sun Kim},
title = {Prioritizing biological pathways by recognizing context in time-series
gene expression data},
journal = {{BMC} Bioinform.},
volume = {17},
number = {{S-17}},
pages = {257--268},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-1335-8},
doi = {10.1186/S12859-016-1335-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeJLKK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/KimHK16,
author = {Min{-}Su Kim and
Benjamin Hur and
Sun Kim},
title = {RDDpred: a condition-specific RNA-editing prediction model from RNA-seq
data},
journal = {{BMC} Genom.},
volume = {17},
number = {{S-1}},
pages = {5},
year = {2016},
url = {https://doi.org/10.1186/s12864-015-2301-y},
doi = {10.1186/S12864-015-2301-Y},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcgenomics/KimHK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JungASKKJK16,
author = {Inuk Jung and
Hongryul Ahn and
Seon{-}Ju Shin and
Jukon Kim and
Hawk{-}Bin Kwon and
Woosuk Jung and
Sun Kim},
title = {Clustering and evolutionary analysis of small RNAs identify regulatory
siRNA clusters induced under drought stress in rice},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {423--432},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0355-3},
doi = {10.1186/S12918-016-0355-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JungASKKJK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChaeLNK16,
author = {Heejoon Chae and
Sangseon Lee and
Kenneth P. Nephew and
Sun Kim},
title = {Subtype-specific CpG island shore methylation and mutation patterns
in 30 breast cancer cell lines},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {433--443},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0356-2},
doi = {10.1186/S12918-016-0356-2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChaeLNK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ParkHRLKKHK16,
author = {Jinwoo Park and
Benjamin Hur and
SungMin Rhee and
Sangsoo Lim and
Min{-}Su Kim and
Kwangsoo Kim and
Wonshik Han and
Sun Kim},
title = {Information theoretic sub-network mining characterizes breast cancer
subtypes in terms of cancer core mechanisms},
journal = {J. Bioinform. Comput. Biol.},
volume = {14},
number = {5},
pages = {1644002:1--1644002:23},
year = {2016},
url = {https://doi.org/10.1142/S0219720016440029},
doi = {10.1142/S0219720016440029},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/ParkHRLKKHK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/Kim16,
author = {Sun Kim},
editor = {Tianhai Tian and
Qinghua Jiang and
Yunlong Liu and
Kevin Burrage and
Jiangning Song and
Yadong Wang and
Xiaohua Hu and
Shinichi Morishita and
Qian Zhu and
Guohua Wang},
title = {Networks and models for the integrated analysis of multi omics data},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2016, Shenzhen, China, December 15-18, 2016},
pages = {6},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/BIBM.2016.7822479},
doi = {10.1109/BIBM.2016.7822479},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/Kim16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/RheeLK16,
author = {SungMin Rhee and
Sangsoo Lim and
Sun Kim},
editor = {Tianhai Tian and
Qinghua Jiang and
Yunlong Liu and
Kevin Burrage and
Jiangning Song and
Yadong Wang and
Xiaohua Hu and
Shinichi Morishita and
Qian Zhu and
Guohua Wang},
title = {Iterative segmented least square method for functional microRNA-mRNA
module discovery in breast cancer},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2016, Shenzhen, China, December 15-18, 2016},
pages = {767--770},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/BIBM.2016.7822618},
doi = {10.1109/BIBM.2016.7822618},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/RheeLK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/YeganovaKKDLCLW16,
author = {Lana Yeganova and
Won Kim and
Sun Kim and
Rezarta Islamaj Dogan and
Wanli Liu and
Donald C. Comeau and
Zhiyong Lu and
W. John Wilbur},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Jun'ichi Tsujii},
title = {PubTermVariants: biomedical term variants and their use for PubMed
search},
booktitle = {Proceedings of the 15th Workshop on Biomedical Natural Language Processing,
BioNLP@ACL 2016, Berlin, Germany, August 12, 2016},
pages = {141--145},
publisher = {Association for Computational Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/W16-2919},
doi = {10.18653/V1/W16-2919},
timestamp = {Fri, 06 Aug 2021 00:41:22 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/YeganovaKKDLCLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/ComeauDKWWL16,
author = {Donald C. Comeau and
Rezarta Islamaj Dogan and
Sun Kim and
Chih{-}Hsuan Wei and
W. John Wilbur and
Zhiyong Lu},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {BioCconvert: {A} Conversion Tool Between BioC and PubAnnotation},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/BT304\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/ComeauDKWWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/KimWL16,
author = {Sun Kim and
W. John Wilbur and
Zhiyong Lu},
title = {Bridging the Gap: a Semantic Similarity Measure between Queries and
Documents},
journal = {CoRR},
volume = {abs/1608.01972},
year = {2016},
url = {http://arxiv.org/abs/1608.01972},
eprinttype = {arXiv},
eprint = {1608.01972},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/KimWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChaeRNK15,
author = {Heejoon Chae and
SungMin Rhee and
Kenneth P. Nephew and
Sun Kim},
title = {BioVLAB-MMIA-NGS: microRNA-mRNA integrated analysis using high-throughput
sequencing data},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {265--267},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu614},
doi = {10.1093/BIOINFORMATICS/BTU614},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChaeRNK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimLW15,
author = {Sun Kim and
Zhiyong Lu and
W. John Wilbur},
title = {Identifying named entities from PubMed{\textregistered}; for enriching
semantic categories},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {57:1--57:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0487-2},
doi = {10.1186/S12859-015-0487-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimLW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jat/BerndtKZ15,
author = {Bruce C. Berndt and
Sun Kim and
Alexandru Zaharescu},
title = {Weighted divisor sums and Bessel function series, {V}},
journal = {J. Approx. Theory},
volume = {197},
pages = {101--114},
year = {2015},
url = {https://doi.org/10.1016/j.jat.2014.06.001},
doi = {10.1016/J.JAT.2014.06.001},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jat/BerndtKZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/KimLYW15,
author = {Sun Kim and
Haibin Liu and
Lana Yeganova and
W. John Wilbur},
title = {Extracting drug-drug interactions from literature using a rich feature-based
linear kernel approach},
journal = {J. Biomed. Informatics},
volume = {55},
pages = {23--30},
year = {2015},
url = {https://doi.org/10.1016/j.jbi.2015.03.002},
doi = {10.1016/J.JBI.2015.03.002},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/KimLYW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/KimYW15,
author = {Sun Kim and
Lana Yeganova and
W. John Wilbur},
editor = {Llu{\'{\i}}s M{\`{a}}rquez and
Chris Callison{-}Burch and
Jian Su and
Daniele Pighin and
Yuval Marton},
title = {Summarizing Topical Contents from PubMed Documents Using a Thematic
Analysis},
booktitle = {Proceedings of the 2015 Conference on Empirical Methods in Natural
Language Processing, {EMNLP} 2015, Lisbon, Portugal, September 17-21,
2015},
pages = {805--810},
publisher = {The Association for Computational Linguistics},
year = {2015},
url = {https://doi.org/10.18653/v1/d15-1094},
doi = {10.18653/V1/D15-1094},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/KimYW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KwonKSCW14,
author = {Dongseop Kwon and
Sun Kim and
Soo{-}Yong Shin and
Andrew Chatr{-}aryamontri and
W. John Wilbur},
title = {Assisting manual literature curation for protein-protein interactions
using BioQRator},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau067},
doi = {10.1093/DATABASE/BAU067},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/KwonKSCW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YeganovaKKW14,
author = {Lana Yeganova and
Won Kim and
Sun Kim and
W. John Wilbur},
title = {Retro: concept-based clustering of biomedical topical sets},
journal = {Bioinform.},
volume = {30},
number = {22},
pages = {3240--3248},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu514},
doi = {10.1093/BIOINFORMATICS/BTU514},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YeganovaKKW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/JungPK14,
author = {Inuk Jung and
Jong Chan Park and
Sun Kim},
title = {piClust: {A} density based piRNA clustering algorithm},
journal = {Comput. Biol. Chem.},
volume = {50},
pages = {60--67},
year = {2014},
url = {https://doi.org/10.1016/j.compbiolchem.2014.01.008},
doi = {10.1016/J.COMPBIOLCHEM.2014.01.008},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/JungPK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/LiuDKCKYLW14,
author = {Wanli Liu and
Rezarta Islamaj Dogan and
Sun Kim and
Donald C. Comeau and
Won Kim and
Lana Yeganova and
Zhiyong Lu and
W. John Wilbur},
title = {Author name disambiguation for PubMed},
journal = {J. Assoc. Inf. Sci. Technol.},
volume = {65},
number = {4},
pages = {765--781},
year = {2014},
url = {https://doi.org/10.1002/asi.23063},
doi = {10.1002/ASI.23063},
timestamp = {Fri, 13 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jasis/LiuDKCKYLW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jct/KimY14,
author = {Sun Kim and
Ae Ja Yee},
title = {Partitions with part difference conditions and Bressoud's conjecture},
journal = {J. Comb. Theory, Ser. {A}},
volume = {126},
pages = {35--69},
year = {2014},
url = {https://doi.org/10.1016/j.jcta.2014.04.004},
doi = {10.1016/J.JCTA.2014.04.004},
timestamp = {Sun, 22 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jct/KimY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KimLYW14,
author = {Sun Kim and
Haibin Liu and
Lana Yeganova and
W. John Wilbur},
title = {Extracting drug-drug interactions from literature using a rich feature-based
linear kernel approach},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-001-1.1545410/f-001-1.1545411/a-034-1.1545577/a-035-1.1545574},
timestamp = {Wed, 17 Apr 2024 11:47:48 +0200},
biburl = {https://dblp.org/rec/conf/amia/KimLYW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bigcomp/AnKK14,
author = {Jaehyun An and
Kwangsoo Kim and
Sun Kim},
title = {An algorithm for identifying differentially expressed genes in multiclass
RNA-seq samples},
booktitle = {International Conference on Big Data and Smart Computing, {BIGCOMP}
2014, Bangkok, Thailand, January 15-17, 2014},
pages = {40--44},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/BIGCOMP.2014.6741402},
doi = {10.1109/BIGCOMP.2014.6741402},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bigcomp/AnKK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BilginKLCP13,
author = {Cemal {\c{C}}agatay Bilgin and
Sun Kim and
Elle Leung and
Hang Chang and
Bahram Parvin},
title = {Integrated profiling of three dimensional cell culture models and
3D microscopy},
journal = {Bioinform.},
volume = {29},
number = {23},
pages = {3087--3093},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt535},
doi = {10.1093/BIOINFORMATICS/BTT535},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BilginKLCP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/hisas/ChaeJLMLK13,
author = {Heejoon Chae and
Inuk Jung and
Hyungro Lee and
Suresh Marru and
Seong{-}Whan Lee and
Sun Kim},
title = {Bio and health informatics meets cloud : BioVLab as an example},
journal = {Health Inf. Sci. Syst.},
volume = {1},
number = {1},
pages = {6},
year = {2013},
url = {https://doi.org/10.1186/2047-2501-1-6},
doi = {10.1186/2047-2501-1-6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/hisas/ChaeJLMLK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/imst/LeeK13,
author = {Kyeong{-}Yeon Lee and
Sun Kim},
title = {Designing discriminative spatial filter vectors in motor imagery brain-computer
interface},
journal = {Int. J. Imaging Syst. Technol.},
volume = {23},
number = {2},
pages = {147--151},
year = {2013},
url = {https://doi.org/10.1002/ima.22038},
doi = {10.1002/IMA.22038},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/imst/LeeK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/AnKRCNK13,
author = {Jaehyun An and
Kwangsoo Kim and
SungMin Rhee and
Heejoon Chae and
Kenneth P. Nephew and
Sun Kim},
title = {Genome-Wide Analysis and Modeling of {DNA} methylation susceptibility
in 30 Breast Cancer Cell Lines by using {CPG} Flanking Sequences},
journal = {J. Bioinform. Comput. Biol.},
volume = {11},
number = {3},
year = {2013},
url = {https://doi.org/10.1142/S0219720013410035},
doi = {10.1142/S0219720013410035},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/AnKRCNK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jct/KimY13,
author = {Sun Kim and
Ae Ja Yee},
title = {The Rogers-Ramanujan-Gordon identities, the generalized G{\"{o}}llnitz-Gordon
identities, and parity questions},
journal = {J. Comb. Theory, Ser. {A}},
volume = {120},
number = {5},
pages = {1038--1056},
year = {2013},
url = {https://doi.org/10.1016/j.jcta.2013.02.005},
doi = {10.1016/J.JCTA.2013.02.005},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jct/KimY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/YooSCK13,
author = {Young Joon Yoo and
Tushar Sandhan and
Jin Young Choi and
Sun Kim},
editor = {Guo{-}Zheng Li and
Sunghoon Kim and
Michael Hughes and
Geoffrey J. McLachlan and
Hongye Sun and
Xiaohua Hu and
Habtom W. Ressom and
Baoyan Liu and
Michael N. Liebman},
title = {Towards simultaneous clustering and motif-modeling for a large number
of protein family},
booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
Shanghai, China, December 18-21, 2013},
pages = {22--28},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBM.2013.6732605},
doi = {10.1109/BIBM.2013.6732605},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/YooSCK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KimKWLW12,
author = {Sun Kim and
Won Kim and
Chih{-}Hsuan Wei and
Zhiyong Lu and
W. John Wilbur},
title = {Prioritizing PubMed articles for the Comparative Toxicogenomic Database
utilizing semantic information},
journal = {Database J. Biol. Databases Curation},
volume = {2012},
year = {2012},
url = {https://doi.org/10.1093/database/bas042},
doi = {10.1093/DATABASE/BAS042},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/KimKWLW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimKSW12,
author = {Sun Kim and
Dongseop Kwon and
Soo{-}Yong Shin and
W. John Wilbur},
title = {{PIE} \emph{the search}: searching PubMed literature for protein interaction
information},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {597--598},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr702},
doi = {10.1093/BIOINFORMATICS/BTR702},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimKSW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PejaverARBCLLBKBK12,
author = {Vikas Rao Pejaver and
Jaehyun An and
SungMin Rhee and
Ankita Bhan and
Jeong{-}Hyeon Choi and
Boshu Liu and
Heewook Lee and
Pamela J. Brown and
David Kysela and
Yves V. Brun and
Sun Kim},
title = {GeneclusterViz: a tool for conserved gene cluster visualization, exploration
and analysis},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1527--1529},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts177},
doi = {10.1093/BIOINFORMATICS/BTS177},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PejaverARBCLLBKBK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/KimW12,
author = {Sun Kim and
W. John Wilbur},
title = {Thematic clustering of text documents using an EM-based approach},
journal = {J. Biomed. Semant.},
volume = {3},
number = {{S-3}},
pages = {S6},
year = {2012},
url = {http://www.jbiomedsem.com/content/3/S3/S6},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/KimW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangNK12,
author = {Youngik Yang and
Kenneth P. Nephew and
Sun Kim},
title = {A novel k-mer mixture logistic regression for methylation susceptibility
modeling of CpG dinucleotides in human gene promoters},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-3}},
pages = {S15},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S3-S15},
doi = {10.1186/1471-2105-13-S3-S15},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangNK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/KimW12,
author = {Sun Kim and
Wei Wang},
title = {Introduction},
journal = {J. Bioinform. Comput. Biol.},
volume = {10},
number = {1},
year = {2012},
url = {https://doi.org/10.1142/S0219720012030011},
doi = {10.1142/S0219720012030011},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/KimW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KimKCW12,
author = {Sun Kim and
Won Kim and
Donald C. Comeau and
W. John Wilbur},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Bonnie L. Webber and
Jun'ichi Tsujii and
John Pestian},
title = {Classifying Gene Sentences in Biomedical Literature by Combining High-Precision
Gene Identifiers},
booktitle = {Proceedings of the 2012 Workshop on Biomedical Natural Language Processing,
BioNLP@HLT-NAACL Montr{\`{e}}al, Canada, June 8, 2012},
pages = {185--192},
publisher = {Association for Computational Linguistics},
year = {2012},
url = {https://aclanthology.org/W12-2423/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KimKCW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smc/LeeK12,
author = {Kyeong{-}Yeon Lee and
Sun Kim},
title = {Discriminative spatial pattern vectors selection for motor imagery
classification},
booktitle = {Proceedings of the {IEEE} International Conference on Systems, Man,
and Cybernetics, {SMC} 2012, Seoul, Korea (South), October 14-17,
2012},
pages = {981--984},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/ICSMC.2012.6377856},
doi = {10.1109/ICSMC.2012.6377856},
timestamp = {Wed, 16 Oct 2019 14:14:51 +0200},
biburl = {https://dblp.org/rec/conf/smc/LeeK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KrallingerVLSCWPBLICCTSRLGMKWRSTALWRNEL11,
author = {Martin Krallinger and
Miguel Vazquez and
Florian Leitner and
David Salgado and
Andrew Chatr{-}aryamontri and
Andrew G. Winter and
Livia Perfetto and
Leonardo Briganti and
Luana Licata and
Marta Iannuccelli and
Luisa Castagnoli and
Gianni Cesareni and
Mike Tyers and
Gerold Schneider and
Fabio Rinaldi and
Robert Leaman and
Graciela Gonzalez and
S{\'{e}}rgio Matos and
Sun Kim and
W. John Wilbur and
Luis M. Rocha and
Hagit Shatkay and
Ashish V. Tendulkar and
Shashank Agarwal and
Feifan Liu and
Xinglong Wang and
Rafal Rak and
Keith Noto and
Charles Elkan and
Zhiyong Lu},
title = {The Protein-Protein Interaction tasks of BioCreative {III:} classification/ranking
of articles and linking bio-ontology concepts to full text},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S3},
doi = {10.1186/1471-2105-12-S8-S3},
timestamp = {Thu, 07 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KrallingerVLSCWPBLICCTSRLGMKWRSTALWRNEL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimW11,
author = {Sun Kim and
W. John Wilbur},
title = {Classifying protein-protein interaction articles using word and syntactic
features},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S9},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S9},
doi = {10.1186/1471-2105-12-S8-S9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejc/KimY11,
author = {Sun Kim and
Ae Ja Yee},
title = {G{\"{o}}llnitz-Gordon identities and parity questions},
journal = {Eur. J. Comb.},
volume = {32},
number = {2},
pages = {288--293},
year = {2011},
url = {https://doi.org/10.1016/j.ejc.2010.10.006},
doi = {10.1016/J.EJC.2010.10.006},
timestamp = {Fri, 12 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ejc/KimY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ChoiK11,
author = {Kwangmin Choi and
Sun Kim},
title = {Sequence-Based enzyme catalytic Domain Prediction Using Clustering
and Aggregated Mutual Information Content},
journal = {J. Bioinform. Comput. Biol.},
volume = {9},
number = {5},
pages = {597--611},
year = {2011},
url = {https://doi.org/10.1142/S0219720011005677},
doi = {10.1142/S0219720011005677},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/ChoiK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/LeeYCNCTHMNK11,
author = {Hyungro Lee and
Youngik Yang and
Heejoon Chae and
Seungyoon Nam and
Donghoon Choi and
Patanachai Tangchaisin and
Chathura Herath and
Suresh Marru and
Kenneth P. Nephew and
Sun Kim},
editor = {Fang{-}Xiang Wu and
Mohammed Javeed Zaki and
Shinichi Morishita and
Yi Pan and
Stephen Wong and
Anastasia Christianson and
Xiaohua Hu},
title = {BioVLAB-MMIA: {A} Reconfigurable Cloud Computing Environment for microRNA
and mRNA Integrated Analysis},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2011, Atlanta, GA, USA, November 12-15, , 2011},
pages = {494--499},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/BIBM.2011.93},
doi = {10.1109/BIBM.2011.93},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/LeeYCNCTHMNK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hisb/ChoiK11,
author = {Kwangmin Choi and
Sun Kim},
title = {Sequence-Based Enzyme Catalytic Domain Prediction Using Clustering
and Aggregated Mutual Information Content},
booktitle = {2011 {IEEE} International Conference on Healthcare Informatics, Imaging
and Systems Biology, {HISB} 2011, San Jose, CA, USA, July 26-29, 2011},
pages = {61--68},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/HISB.2011.59},
doi = {10.1109/HISB.2011.59},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hisb/ChoiK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/KimW11,
author = {Sun Kim and
W. John Wilbur},
editor = {Xue{-}wen Chen and
Tharam S. Dillon and
Hisao Ishibuchi and
Jian Pei and
Haixun Wang and
M. Arif Wani},
title = {An {EM} Clustering Algorithm which Produces a Dual Representation},
booktitle = {10th International Conference on Machine Learning and Applications
and Workshops, {ICMLA} 2011, Honolulu, Hawaii, USA, December 18-21,
2011. Volume 2: Special Sessions and Workshop},
pages = {90--95},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICMLA.2011.29},
doi = {10.1109/ICMLA.2011.29},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/KimW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/tg/MarruCTKPN11,
author = {Suresh Marru and
Heejoon Chae and
Patanachai Tangchaisin and
Sun Kim and
Marlon E. Pierce and
Kenneth P. Nephew},
editor = {John Towns and
Shawn Brown and
Daniel S. Katz},
title = {Transitioning BioVLab cloud workbench to a science gateway},
booktitle = {Proceedings of the 2011 TeraGrid Conference - Extreme Digital Discovery,
{TG} '11, Salt Lake City, Utah, USA, July 18-21, 2011},
pages = {40:1--40:2},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2016741.2016784},
doi = {10.1145/2016741.2016784},
timestamp = {Sat, 09 Apr 2022 12:46:56 +0200},
biburl = {https://dblp.org/rec/conf/tg/MarruCTKPN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bcb/2011,
editor = {Robert Grossman and
Andrey Rzhetsky and
Sun Kim and
Wei Wang},
title = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
2011},
publisher = {{ACM}},
year = {2011},
url = {http://dl.acm.org/citation.cfm?id=2147805},
isbn = {978-1-4503-0796-3},
timestamp = {Sun, 11 Nov 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/2011.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/Kim10,
author = {Sun Kim},
title = {Data mining for the study of disease genes and proteins},
journal = {Artif. Intell. Medicine},
volume = {49},
number = {3},
pages = {133--134},
year = {2010},
url = {https://doi.org/10.1016/j.artmed.2010.04.002},
doi = {10.1016/J.ARTMED.2010.04.002},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/artmed/Kim10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangGK10,
author = {Youngik Yang and
Donald Gilbert and
Sun Kim},
title = {Annotation confidence score for genome annotation: a genome comparison
approach},
journal = {Bioinform.},
volume = {26},
number = {1},
pages = {22--29},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btp613},
doi = {10.1093/BIOINFORMATICS/BTP613},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangGK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChaeCKA10,
author = {Heejoon Chae and
Kwangmin Choi and
Sun Kim and
Haleh Ashki},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {EGGSlicer: predicting biologically meaningful gene sets from gene
clusters using gene ontology information},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {448--450},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854853},
doi = {10.1145/1854776.1854853},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ChaeCKA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/PejaverK10,
author = {Vikas Rao Pejaver and
Sun Kim},
editor = {Taesung Park and
Stephen Kwok{-}Wing Tsui and
Luonan Chen and
Michael K. Ng and
Limsoon Wong and
Xiaohua Hu},
title = {Gene cluster profile vectors: {A} novel method to infer functional
coupling using both gene proximity and co-occurrence profiles},
booktitle = {2010 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2010, Hong Kong, China, December 18-21, 2010, Proceedings},
pages = {29--34},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/BIBM.2010.5706530},
doi = {10.1109/BIBM.2010.5706530},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/PejaverK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XinLBTFLHKN09,
author = {Fuxiao Xin and
Meng Li and
Curtis Balch and
Michael Thomson and
Meiyun Fan and
Yunlong Liu and
Scott M. Hammond and
Sun Kim and
Kenneth P. Nephew},
title = {Computational analysis of microRNA profiles and their target genes
suggests significant involvement in breast cancer antiestrogen resistance},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {430--434},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn646},
doi = {10.1093/BIOINFORMATICS/BTN646},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XinLBTFLHKN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/KimKZ09,
author = {Sun Kim and
Jeongmi Kim and
Byoung{-}Tak Zhang},
title = {Ensembled support vector machines for human papillomavirus risk type
prediction from protein secondary structures},
journal = {Comput. Biol. Medicine},
volume = {39},
number = {2},
pages = {187--193},
year = {2009},
url = {https://doi.org/10.1016/j.compbiomed.2008.12.005},
doi = {10.1016/J.COMPBIOMED.2008.12.005},
timestamp = {Wed, 02 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/KimKZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jct/Kim09,
author = {Sun Kim},
title = {Bijective proofs of partition identities arising from modular equations},
journal = {J. Comb. Theory, Ser. {A}},
volume = {116},
number = {3},
pages = {699--712},
year = {2009},
url = {https://doi.org/10.1016/j.jcta.2008.11.002},
doi = {10.1016/J.JCTA.2008.11.002},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jct/Kim09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NamLCBKN09,
author = {Seungyoon Nam and
Meng Li and
Kwangmin Choi and
Curtis Balch and
Sun Kim and
Kenneth P. Nephew},
title = {MicroRNA and mRNA integrated analysis {(MMIA):} a web tool for examining
biological functions of microRNA expression},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Web-Server-Issue},
pages = {356--362},
year = {2009},
url = {https://doi.org/10.1093/nar/gkp294},
doi = {10.1093/NAR/GKP294},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NamLCBKN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/BautuKBLZ09,
author = {Elena Bautu and
Sun Kim and
Andrei Bautu and
Henri Luchian and
Byoung{-}Tak Zhang},
title = {Evolving hypernetwork models of binary time series for forecasting
price movements on stock markets},
booktitle = {Proceedings of the {IEEE} Congress on Evolutionary Computation, {CEC}
2009, Trondheim, Norway, 18-21 May, 2009},
pages = {166--173},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/CEC.2009.4982944},
doi = {10.1109/CEC.2009.4982944},
timestamp = {Thu, 16 Dec 2021 14:01:55 +0100},
biburl = {https://dblp.org/rec/conf/cec/BautuKBLZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gecco/BootkrajangKZ09,
author = {Jakramate Bootkrajang and
Sun Kim and
Byoung{-}Tak Zhang},
editor = {Franz Rothlauf},
title = {Evolutionary hypernetwork classifiers for protein-proteininteraction
sentence filtering},
booktitle = {Genetic and Evolutionary Computation Conference, {GECCO} 2009, Proceedings,
Montreal, Qu{\'{e}}bec, Canada, July 8-12, 2009},
pages = {185--192},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1569901.1569928},
doi = {10.1145/1569901.1569928},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gecco/BootkrajangKZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigdoc/YangK09,
author = {Youngik Yang and
Sun Kim},
editor = {Brad Mehlenbacher and
Aristidis Protopsaltis and
Ashley Williams and
Shaun Slattery},
title = {Experience report: issues in comparing gene function annotation in
text},
booktitle = {Proceedings of the 27th Annual International Conference on Design
of Communication, {SIGDOC} 2009, Bloomington, Indiana, USA, October
5-7, 2009},
pages = {227--232},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1621995.1622040},
doi = {10.1145/1621995.1622040},
timestamp = {Sat, 30 Sep 2023 09:56:22 +0200},
biburl = {https://dblp.org/rec/conf/sigdoc/YangK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChoiKTAGC08,
author = {Jeong{-}Hyeon Choi and
Sun Kim and
Haixu Tang and
Justen Andrews and
Don G. Gilbert and
John Colbourne},
title = {A machine-learning approach to combined evidence validation of genome
assemblies},
journal = {Bioinform.},
volume = {24},
number = {6},
pages = {744--750},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btm608},
doi = {10.1093/BIOINFORMATICS/BTM608},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChoiKTAGC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiPBKLHNK08,
author = {Meng Li and
Hyun{-}il Henry Paik and
Curtis Balch and
Yoosung Kim and
Lang Li and
Tim Hui{-}Ming Huang and
Kenneth P. Nephew and
Sun Kim},
title = {Enriched transcription factor binding sites in hypermethylated gene
promoters in drug resistant cancer cells},
journal = {Bioinform.},
volume = {24},
number = {16},
pages = {1745--1748},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn256},
doi = {10.1093/BIOINFORMATICS/BTN256},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiPBKLHNK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChoiK08,
author = {Kwangmin Choi and
Sun Kim},
title = {ComPath: comparative enzyme analysis and annotation in pathway/subsystem
contexts},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-145},
doi = {10.1186/1471-2105-9-145},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChoiK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuCSKY08,
author = {Meng Hu and
Kwangmin Choi and
Wei Su and
Sun Kim and
Jiong Yang},
title = {A gene pattern mining algorithm using interchangeable gene sets for
prokaryotes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-124},
doi = {10.1186/1471-2105-9-124},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuCSKY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimSLKSZ08,
author = {Sun Kim and
Soo{-}Yong Shin and
In{-}Hee Lee and
Soo{-}Jin Kim and
Ram Sriram and
Byoung{-}Tak Zhang},
title = {{PIE:} an online prediction system for protein-protein interactions
from text},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Web-Server-Issue},
pages = {411--415},
year = {2008},
url = {https://doi.org/10.1093/nar/gkn281},
doi = {10.1093/NAR/GKN281},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KimSLKSZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/YangCCPGK08,
author = {Youngik Yang and
Jong Youl Choi and
Kwangmin Choi and
Marlon E. Pierce and
Dennis Gannon and
Sun Kim},
title = {BioVLAB-Microarray: Microarray Data Analysis in Virtual Environment},
booktitle = {Fourth International Conference on e-Science, e-Science 2008, 7-12
December 2008, Indianapolis, IN, {USA}},
pages = {159--165},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/eScience.2008.57},
doi = {10.1109/ESCIENCE.2008.57},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/YangCCPGK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/KimLPNSKXH08,
author = {Sun Kim and
Meng Li and
Hyun{-}il Henry Paik and
Kenneth P. Nephew and
Huidong Shi and
Robin Kramer and
Dong Xu and
Tim Hui{-}Ming Huang},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Predicting {DNA} Methylation Susceptibility Using CpG Flanking Sequences},
booktitle = {Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 4-8 January 2008},
pages = {315--326},
publisher = {World Scientific},
year = {2008},
url = {http://psb.stanford.edu/psb-online/proceedings/psb08/kim.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/KimLPNSKXH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bibm/2008,
editor = {Xue{-}wen Chen and
Xiaohua Hu and
Sun Kim},
title = {2008 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2008, Philadephia, Pennsylvania, USA, November 3-5, 2008},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://ieeexplore.ieee.org/xpl/conhome/4684854/proceeding},
isbn = {978-0-7695-3452-7},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/2008.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaeTWXK07,
author = {Seung{-}Hee Bae and
Haixu Tang and
Jing Wu and
Jun Xie and
Sun Kim},
title = {dPattern: transcription factor binding site {(TFBS)} discovery in
human genome using a discriminative pattern analysis},
journal = {Bioinform.},
volume = {23},
number = {19},
pages = {2619--2621},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm288},
doi = {10.1093/BIOINFORMATICS/BTM288},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaeTWXK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejbsb/HemmerichK07,
author = {Christopher Michael Hemmerich and
Sun Kim},
title = {A Study of Residue Correlation within Protein Sequences and Its Application
to Sequence Classification},
journal = {{EURASIP} J. Bioinform. Syst. Biol.},
volume = {2007},
year = {2007},
url = {https://doi.org/10.1155/2007/87356},
doi = {10.1155/2007/87356},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ejbsb/HemmerichK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/ParkKKCZ07,
author = {Chan{-}Hoon Park and
Soo{-}Jin Kim and
Sun Kim and
Dong{-}Yeon Cho and
Byoung{-}Tak Zhang},
title = {Finding Cancer-Related Gene Combinations Using a Molecular Evolutionary
Algorithm},
booktitle = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics
and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical
School, Boston, MA, {USA}},
pages = {158--163},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/BIBE.2007.4375559},
doi = {10.1109/BIBE.2007.4375559},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/ParkKKCZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/KimBMCB07,
author = {Sun Kim and
Ankita Bhan and
Bharath K. Maryada and
Kwangmin Choi and
Yves V. Brun},
title = {{EGGS:} Extraction of Gene Clusters Using Genome Context Based Sequence
Matching Techniques},
booktitle = {Proceedings of the {IEEE} International Conference on Bioinformatics
and Biomedicine, {BIBM} 2007, Silicon Valley, CA, USA, November 2-4,
2007},
pages = {23--28},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/BIBM.2007.30},
doi = {10.1109/BIBM.2007.30},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/KimBMCB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/KimKZ07,
author = {Sun Kim and
Soo{-}Jin Kim and
Byoung{-}Tak Zhang},
title = {Evolving hypernetwork classifiers for microRNA expression profile
analysis},
booktitle = {Proceedings of the {IEEE} Congress on Evolutionary Computation, {CEC}
2007, 25-28 September 2007, Singapore},
pages = {313--319},
publisher = {{IEEE}},
year = {2007},
url = {https://doi.org/10.1109/CEC.2007.4424487},
doi = {10.1109/CEC.2007.4424487},
timestamp = {Thu, 16 Dec 2021 14:01:04 +0100},
biburl = {https://dblp.org/rec/conf/cec/KimKZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/ChoiYK07,
author = {Kwangmin Choi and
Youngik Yang and
Sun Kim},
editor = {M. Arif Wani and
Mehmed M. Kantardzic and
Tao Li and
Ying Liu and
Lukasz A. Kurgan and
Jieping Ye and
Mitsunori Ogihara and
Seref Sagiroglu and
Xue{-}wen Chen and
Leif E. Peterson and
Khalid Hafeez},
title = {{CLASSEQ:} Classification of Sequences via Comparative Analysis of
Multiple Genomes},
booktitle = {The Sixth International Conference on Machine Learning and Applications,
{ICMLA} 2007, Cincinnati, Ohio, USA, 13-15 December 2007},
pages = {554--559},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/ICMLA.2007.94},
doi = {10.1109/ICMLA.2007.94},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/ChoiYK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/ws/BMW07-papers/TangK07,
author = {Haixu Tang and
Sun Kim},
editor = {Sanghamitra Bandyopadhyay and
Ujjwal Maulik and
Jason Tsong{-}Li Wang},
title = {Bioinformatics: Mining the Massive Data from High Throughput Genomics
Experiments},
booktitle = {Analysis of Biological Data: {A} Soft Computing Approach},
series = {Science, Engineering, and Biology Informatics},
volume = {3},
pages = {3--24},
publisher = {World Scientific},
year = {2007},
url = {https://doi.org/10.1142/9789812708892\_0001},
doi = {10.1142/9789812708892\_0001},
timestamp = {Tue, 16 May 2017 14:01:33 +0200},
biburl = {https://dblp.org/rec/books/ws/BMW07-papers/TangK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeCDK06,
author = {Do{-}Hoon Lee and
Jeong{-}Hyeon Choi and
Mehmet M. Dalkilic and
Sun Kim},
title = {{COMPAM} : visualization of combining pairwise alignments for multiple
genomes},
journal = {Bioinform.},
volume = {22},
number = {2},
pages = {242--244},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/bti759},
doi = {10.1093/BIOINFORMATICS/BTI759},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeCDK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiCJPFLZRBDKHN06,
author = {Lang Li and
Alfred S. L. Cheng and
Victor X. Jin and
Henry H. Paik and
Meiyun Fan and
Xiaoman Li and
Wei Zhang and
Jason Robarge and
Curtis Balch and
Ramana V. Davuluri and
Sun Kim and
Tim Hui{-}Ming Huang and
Kenneth P. Nephew},
title = {A mixture model-based discriminate analysis for identifying ordered
transcription factor binding site pairs in gene promoters directly
regulated by estrogen receptor-alpha},
journal = {Bioinform.},
volume = {22},
number = {18},
pages = {2210--2216},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl329},
doi = {10.1093/BIOINFORMATICS/BTL329},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiCJPFLZRBDKHN06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SongCCSZTKKY06,
author = {Bin Song and
Jeong{-}Hyeon Choi and
Guangyu Chen and
Jacek Szymanski and
Guo{-}Qiang Zhang and
Anthony K. H. Tung and
Jaewoo Kang and
Sun Kim and
Jiong Yang},
title = {{ARCS:} an aggregated related column scoring scheme for aligned sequences},
journal = {Bioinform.},
volume = {22},
number = {19},
pages = {2326--2332},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl398},
doi = {10.1093/BIOINFORMATICS/BTL398},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SongCCSZTKKY06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/TsukaharaKT06,
author = {Takuma Tsukahara and
Sun Kim and
Milton W. Taylor},
title = {{REFINEMENT:} {A} search framework for the identification of interferon-responsive
elements in {DNA} sequences - a case study with {ISRE} and {GAS}},
journal = {Comput. Biol. Chem.},
volume = {30},
number = {2},
pages = {134--147},
year = {2006},
url = {https://doi.org/10.1016/j.compbiolchem.2006.01.002},
doi = {10.1016/J.COMPBIOLCHEM.2006.01.002},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/TsukaharaKT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejasp/ChenKPC06,
author = {Xue{-}wen Chen and
Sun Kim and
Vladimir I. Pavlovic and
David P. Casasent},
title = {Advanced Signal Processing Techniques for Bioinformatics},
journal = {{EURASIP} J. Adv. Signal Process.},
volume = {2006},
year = {2006},
url = {https://doi.org/10.1155/ASP/2006/51090},
doi = {10.1155/ASP/2006/51090},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ejasp/ChenKPC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijdmb/KimL06,
author = {Sun Kim and
Jason Lee},
title = {{BAG:} a graph theoretic sequence clustering algorithm},
journal = {Int. J. Data Min. Bioinform.},
volume = {1},
number = {2},
pages = {178--200},
year = {2006},
url = {https://doi.org/10.1504/IJDMB.2006.010855},
doi = {10.1504/IJDMB.2006.010855},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijdmb/KimL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/KimHZ06,
author = {Sun Kim and
Min{-}Oh Heo and
Byoung{-}Tak Zhang},
title = {Text Classifiers Evolved on a Simulated {DNA} Computer},
booktitle = {{IEEE} International Conference on Evolutionary Computation, {CEC}
2006, part of {WCCI} 2006, Vancouver, BC, Canada, 16-21 July 2006},
pages = {2646--2652},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/CEC.2006.1688639},
doi = {10.1109/CEC.2006.1688639},
timestamp = {Thu, 16 Dec 2021 14:00:41 +0100},
biburl = {https://dblp.org/rec/conf/cec/KimHZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/evoW/KimZ06,
author = {Sun Kim and
Byoung{-}Tak Zhang},
editor = {Franz Rothlauf and
J{\"{u}}rgen Branke and
Stefano Cagnoni and
Ernesto Costa and
Carlos Cotta and
Rolf Drechsler and
Evelyne Lutton and
Penousal Machado and
Jason H. Moore and
Juan Romero and
George D. Smith and
Giovanni Squillero and
Hideyuki Takagi},
title = {Human Papillomavirus Risk Type Classification from Protein Sequences
Using Support Vector Machines},
booktitle = {Applications of Evolutionary Computing, EvoWorkshops 2006: EvoBIO,
EvoCOMNET, EvoHOT, EvoIASP, EvoINTERACTION, EvoMUSART, and EvoSTOC,
Budapest, Hungary, April 10-12, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3907},
pages = {57--66},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732242\_6},
doi = {10.1007/11732242\_6},
timestamp = {Tue, 14 May 2019 10:00:37 +0200},
biburl = {https://dblp.org/rec/conf/evoW/KimZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdm/ChoiSK06,
author = {Kwangmin Choi and
Amit Saple and
Sun Kim},
title = {Genome Data Type: a Vehicle to Deliver a Genome Comparison System
on the Web},
booktitle = {Workshops Proceedings of the 6th {IEEE} International Conference on
Data Mining {(ICDM} 2006), 18-22 December 2006, Hong Kong, China},
pages = {142--146},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/ICDMW.2006.87},
doi = {10.1109/ICDMW.2006.87},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdm/ChoiSK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isnn/KimE06,
author = {Sun Kim and
Jae{-}Hong Eom},
editor = {Jun Wang and
Zhang Yi and
Jacek M. Zurada and
Bao{-}Liang Lu and
Hujun Yin},
title = {Prediction of the Human Papillomavirus Risk Types Using Gap-Spectrum
Kernels},
booktitle = {Advances in Neural Networks - {ISNN} 2006, Third International Symposium
on Neural Networks, Chengdu, China, May 28 - June 1, 2006, Proceedings,
Part {III}},
series = {Lecture Notes in Computer Science},
volume = {3973},
pages = {710--715},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11760191\_104},
doi = {10.1007/11760191\_104},
timestamp = {Tue, 14 May 2019 10:00:36 +0200},
biburl = {https://dblp.org/rec/conf/isnn/KimE06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/EomKKZ06,
author = {Jae{-}Hong Eom and
Sun Kim and
Seong{-}Hwan Kim and
Byoung{-}Tak Zhang},
editor = {Eric G. Bremer and
J{\"{o}}rg Hakenberg and
Eui{-}Hong Han and
Daniel P. Berrar and
Werner Dubitzky},
title = {A Tree Kernel-Based Method for Protein-Protein Interaction Mining
from Biomedical Literature},
booktitle = {Knowledge Discovery in Life Science Literature, {PAKDD} 2006 International
Workshop, {KDLL} 2006, Singapore, April 9, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3886},
pages = {42--52},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11683568\_4},
doi = {10.1007/11683568\_4},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/pakdd/EomKKZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vdmb/PatwardhanTKD06,
author = {Rupali Patwardhan and
Haixu Tang and
Sun Kim and
Mehmet M. Dalkilic},
editor = {Mehmet M. Dalkilic and
Sun Kim and
Jiong Yang},
title = {An Approximate de Bruijn Graph Approach to Multiple Local Alignment
and Motif Discovery in Protein Sequences},
booktitle = {Data Mining and Bioinformatics, First International Workshop, {VDMB}
2006, Seoul, Korea, September 11, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4316},
pages = {158--169},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11960669\_14},
doi = {10.1007/11960669\_14},
timestamp = {Tue, 14 May 2019 10:00:45 +0200},
biburl = {https://dblp.org/rec/conf/vdmb/PatwardhanTKD06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/vdmb/2006,
editor = {Mehmet M. Dalkilic and
Sun Kim and
Jiong Yang},
title = {Data Mining and Bioinformatics, First International Workshop, {VDMB}
2006, Seoul, Korea, September 11, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4316},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11960669},
doi = {10.1007/11960669},
isbn = {3-540-68970-2},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/vdmb/2006.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChoiMCK05,
author = {Kwangmin Choi and
Yu Ma and
Jeong{-}Hyeon Choi and
Sun Kim},
title = {{PLATCOM:} a Platform for Computational Comparative Genomics},
journal = {Bioinform.},
volume = {21},
number = {10},
pages = {2514--2516},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti350},
doi = {10.1093/BIOINFORMATICS/BTI350},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChoiMCK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/ChoiCK05,
author = {Jeong{-}Hyeon Choi and
Hwan{-}Gue Cho and
Sun Kim},
title = {{GAME:} {A} simple and efficient whole genome alignment method using
maximal exact match filtering},
journal = {Comput. Biol. Chem.},
volume = {29},
number = {3},
pages = {244--253},
year = {2005},
url = {https://doi.org/10.1016/j.compbiolchem.2005.04.004},
doi = {10.1016/J.COMPBIOLCHEM.2005.04.004},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/ChoiCK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/ChoiCSWLK05,
author = {Kwangmin Choi and
Jeong{-}Hyeon Choi and
Amit Saple and
Zhiping Wang and
Jason Lee and
Sun Kim},
title = {{PLATCOM:} a Platform for Computational Comparative Genomics on the
Web},
booktitle = {Fourth International {IEEE} Computer Society Computational Systems
Bioinformatics Conference Workshops {\&} Poster Abstracts, {CSB}
2005 Workshops, Stanford, CA, USA, August 8-11, 2005},
pages = {27--30},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CSBW.2005.107},
doi = {10.1109/CSBW.2005.107},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/ChoiCSWLK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/KimCY05,
author = {Sun Kim and
Jeong{-}Hyeon Choi and
Jiong Yang},
title = {Gene Teams with Relaxed Proximity Constraint},
booktitle = {Fourth International {IEEE} Computer Society Computational Systems
Bioinformatics Conference, {CSB} 2005, Stanford, CA, USA, August 8-11,
2005},
pages = {44--55},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CSB.2005.33},
doi = {10.1109/CSB.2005.33},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/KimCY05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/LeeK05,
author = {Jason Lee and
Sun Kim},
title = {Cluster Utility: {A} New Metric for Clustering Biological Sequences},
booktitle = {Fourth International {IEEE} Computer Society Computational Systems
Bioinformatics Conference Workshops {\&} Poster Abstracts, {CSB}
2005 Workshops, Stanford, CA, USA, August 8-11, 2005},
pages = {45--46},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CSBW.2005.38},
doi = {10.1109/CSBW.2005.38},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/LeeK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/ChoiCSWLK05,
author = {Kwangmin Choi and
Jeong{-}Hyeon Choi and
Amit Saple and
Zhiping Wang and
Jason Lee and
Sun Kim},
editor = {Bertram Lud{\"{a}}scher and
Louiqa Raschid},
title = {{PLATCOM:} Current Status and Plan for the Next Stages},
booktitle = {Data Integration in the Life Sciences, Second InternationalWorkshop,
{DILS} 2005, San Diego, CA, USA, July 20-22, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3615},
pages = {300--304},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11530084\_27},
doi = {10.1007/11530084\_27},
timestamp = {Tue, 14 May 2019 10:00:42 +0200},
biburl = {https://dblp.org/rec/conf/dils/ChoiCSWLK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icnc/KimSP05a,
author = {Sun Kim and
Kyung{-}shik Shin and
Kyungdo Park},
editor = {Lipo Wang and
Ke Chen and
Yew{-}Soon Ong},
title = {An Application of Support Vector Machines for Customer Churn Analysis:
Credit Card Case},
booktitle = {Advances in Natural Computation, First International Conference, {ICNC}
2005, Changsha, China, August 27-29, 2005, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3611},
pages = {636--647},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11539117\_91},
doi = {10.1007/11539117\_91},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icnc/KimSP05a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/ShethK05,
author = {Hardik A. Sheth and
Sun Kim},
editor = {Srinivasan Parthasarathy and
Wei Wang and
Mohammed J. Zaki},
title = {Motif discovery for proteins using subsequence clustering},
booktitle = {Proceedings of the 5th international workshop on Bioinformatics, {BIOKDD}
2005, Chicago, Illinois, USA, August 21, 2005},
pages = {3--6},
publisher = {{ACM}},
year = {2005},
url = {https://doi.org/10.1145/1134030.1134032},
doi = {10.1145/1134030.1134032},
timestamp = {Tue, 06 Nov 2018 16:59:36 +0100},
biburl = {https://dblp.org/rec/conf/kdd/ShethK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pricai/LeeKZ04,
author = {In{-}Hee Lee and
Sun Kim and
Byoung{-}Tak Zhang},
editor = {Chengqi Zhang and
Hans W. Guesgen and
Wai{-}Kiang Yeap},
title = {Multi-objective Evolutionary Probe Design Based on Thermodynamic Criteria
for {HPV} Detection},
booktitle = {{PRICAI} 2004: Trends in Artificial Intelligence, 8th Pacific Rim
International Conference on Artificial Intelligence, Auckland, New
Zealand, August 9-13, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3157},
pages = {742--750},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-28633-2\_78},
doi = {10.1007/978-3-540-28633-2\_78},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pricai/LeeKZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChoiCCK04,
author = {Jeong{-}Hyeon Choi and
Kwangmin Choi and
Hwan{-}Gue Cho and
Sun Kim},
editor = {Jens Lagergren},
title = {Multiple Genome Alignment by Clustering Pairwise Matches},
booktitle = {Comparative Genomics, {RECOMB} 2004 International Workshop, {RCG}
2004, Bertinoro, Italy, October 16-19, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3388},
pages = {30--41},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32290-0\_3},
doi = {10.1007/978-3-540-32290-0\_3},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChoiCCK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/WangDK04,
author = {Zhiping Wang and
Mehmet M. Dalkilic and
Sun Kim},
editor = {Hisham Haddad and
Andrea Omicini and
Roger L. Wainwright and
Lorie M. Liebrock},
title = {Guiding motif discovery by iterative pattern refinement},
booktitle = {Proceedings of the 2004 {ACM} Symposium on Applied Computing (SAC),
Nicosia, Cyprus, March 14-17, 2004},
pages = {162--166},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/967900.967934},
doi = {10.1145/967900.967934},
timestamp = {Tue, 06 Nov 2018 11:06:44 +0100},
biburl = {https://dblp.org/rec/conf/sac/WangDK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/apin/KimZ03,
author = {Sun Kim and
Byoung{-}Tak Zhang},
title = {Genetic Mining of {HTML} Structures for Effective Web-Document Retrieval},
journal = {Appl. Intell.},
volume = {18},
number = {3},
pages = {243--256},
year = {2003},
url = {https://doi.org/10.1023/A:1023293820057},
doi = {10.1023/A:1023293820057},
timestamp = {Wed, 17 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/apin/KimZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/metmbs/GunduzZDK03,
author = {Irfan Gunduz and
Sihui Zhao and
Mehmet M. Dalkilic and
Sun Kim},
editor = {Faramarz Valafar and
Homayoun Valafar},
title = {Motif Discovery from Large Number of Sequences: {A} Case Study with
Disease Resistance Genes in Arabidopsos thaliana},
booktitle = {Proceedings of the International Conference on Mathematics and Engineering
Techniques in Medicine and Biological Scienes, {METMBS} '03, June
23 - 26, 2003, Las Vegas, Nevada, {USA}},
pages = {29--34},
publisher = {{CSREA} Press},
year = {2003},
timestamp = {Thu, 23 Jun 2016 15:53:27 +0200},
biburl = {https://dblp.org/rec/conf/metmbs/GunduzZDK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/ws/Wang03/Kim03,
author = {Sun Kim},
editor = {Jason Tsong{-}Li Wang and
Cathy H. Wu and
Paul P. Wang},
title = {Graph Theoretic Sequence Clustering Algorithms and Their Applications
to Genome Comparison},
booktitle = {Computational Biology and Genome Informatics},
pages = {81--116},
publisher = {World Scientific},
year = {2003},
timestamp = {Sat, 03 Aug 2019 22:52:51 +0200},
biburl = {https://dblp.org/rec/books/ws/Wang03/Kim03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/KimZ01,
author = {Sun Kim and
Byoung{-}Tak Zhang},
title = {Evolutionary learning of Web-document structure for information retrieval},
booktitle = {Proceedings of the 2001 Congress on Evolutionary Computation, {CEC}
2001, COEX, Seoul, Korea, May 27-30, 2001},
pages = {1253--1260},
publisher = {{IEEE}},
year = {2001},
url = {https://doi.org/10.1109/CEC.2001.934334},
doi = {10.1109/CEC.2001.934334},
timestamp = {Sat, 08 Jan 2022 01:38:02 +0100},
biburl = {https://dblp.org/rec/conf/cec/KimZ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/KimLT01,
author = {Sun Kim and
Li Liao and
Jean{-}Fran{\c{c}}ois Tomb},
editor = {Mohammed Javeed Zaki and
Hannu Toivonen and
Jason Tsong{-}Li Wang},
title = {A probabilistic approach to sequence assembly validation},
booktitle = {Proceedings of the {ACM} {SIGKDD} Workshop on Data Mining in Bioinformatics
{(BIOKDD} 2001)},
pages = {38--43},
year = {2001},
url = {http://www.cs.rpi.edu/\%7Ezaki/BIOKDD01/kim.ps.gz},
timestamp = {Fri, 23 Aug 2019 14:18:49 +0200},
biburl = {https://dblp.org/rec/conf/kdd/KimLT01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pricai/KimZ00,
author = {Sun Kim and
Byoung{-}Tak Zhang},
editor = {Ah{-}Hwee Tan and
Philip S. Yu},
title = {Web-Document Retrieval by Genetic Learning of Importance Factors for
{HTML} Tags},
booktitle = {Proceedings of the International Workshop on Text and Web Mining,
Melbourne, Australia, August 2000},
pages = {13--23},
year = {2000},
url = {http://textmining.krdl.org.sg/PRICAI2000/web-retrieval.pdf},
timestamp = {Wed, 27 Jun 2018 13:48:41 +0200},
biburl = {https://dblp.org/rec/conf/pricai/KimZ00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KimS99,
author = {Sun Kim and
Alberto Maria Segre},
title = {{AMASS:} {A} Structured Pattern Matching Approach to Shotgun Sequence
Assembly},
journal = {J. Comput. Biol.},
volume = {6},
number = {2},
pages = {163--186},
year = {1999},
url = {https://doi.org/10.1089/cmb.1999.6.163},
doi = {10.1089/CMB.1999.6.163},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/KimS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jea/Kim99,
author = {Sun Kim},
title = {A New String-Pattern Matching Algorithm Using Partitioning and Hashing
Efficiently},
journal = {{ACM} J. Exp. Algorithmics},
volume = {4},
pages = {2},
year = {1999},
url = {https://doi.org/10.1145/347792.347803},
doi = {10.1145/347792.347803},
timestamp = {Thu, 25 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jea/Kim99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/ShinKKESZ99,
author = {Dong{-}Ho Shin and
Yu{-}Hwan Kim and
Sun Kim and
Jae{-}Hong Eom and
Hyung{-}Joo Shin and
Byoung{-}Tak Zhang},
editor = {Ellen M. Voorhees and
Donna K. Harman},
title = {{SCAI} {TREC-8} Experiments},
booktitle = {Proceedings of The Eighth Text REtrieval Conference, {TREC} 1999,
Gaithersburg, Maryland, USA, November 17-19, 1999},
series = {{NIST} Special Publication},
volume = {500-246},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {1999},
url = {http://trec.nist.gov/pubs/trec8/papers/ScaiTrec8.ps},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/ShinKKESZ99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/KimZ94,
author = {Sun Kim and
Hantao Zhang},
editor = {Barbara Hayes{-}Roth and
Richard E. Korf},
title = {ModGen: Theorem Proving by Model Generation},
booktitle = {Proceedings of the 12th National Conference on Artificial Intelligence,
Seattle, WA, USA, July 31 - August 4, 1994, Volume 1},
pages = {162--167},
publisher = {{AAAI} Press / The {MIT} Press},
year = {1994},
url = {http://www.aaai.org/Library/AAAI/1994/aaai94-025.php},
timestamp = {Mon, 04 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aaai/KimZ94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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