BibTeX records: Simon Jupp

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@article{DBLP:journals/biomedsem/XuJGJPC23,
  author       = {Fuqi Xu and
                  Nick S. Juty and
                  Carole A. Goble and
                  Simon Jupp and
                  Helen E. Parkinson and
                  M{\'{e}}lanie Courtot},
  title        = {Features of a {FAIR} vocabulary},
  journal      = {J. Biomed. Semant.},
  volume       = {14},
  number       = {1},
  pages        = {6},
  year         = {2023},
  url          = {https://doi.org/10.1186/s13326-023-00286-8},
  doi          = {10.1186/S13326-023-00286-8},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/XuJGJPC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MatentzogluBBBB22,
  author       = {Nicolas Matentzoglu and
                  James P. Balhoff and
                  Susan M. Bello and
                  Chris Bizon and
                  Matthew H. Brush and
                  Tiffany J. Callahan and
                  Christopher G. Chute and
                  William D. Duncan and
                  Chris T. A. Evelo and
                  Davera Gabriel and
                  John Graybeal and
                  Alasdair J. G. Gray and
                  Benjamin M. Gyori and
                  Melissa A. Haendel and
                  Henriette Harmse and
                  Nomi L. Harris and
                  Ian Harrow and
                  Harshad Hegde and
                  Amelia L. Hoyt and
                  Charles Tapley Hoyt and
                  Dazhi Jiao and
                  Ernesto Jim{\'{e}}nez{-}Ruiz and
                  Simon Jupp and
                  Hyeongsik Kim and
                  Sebastian K{\"{o}}hler and
                  Thomas Liener and
                  Qinqin Long and
                  James Malone and
                  James A. McLaughlin and
                  Julie A. McMurry and
                  Sierra A. T. Moxon and
                  Monica C. Munoz{-}Torres and
                  David Osumi{-}Sutherland and
                  James A. Overton and
                  Bjoern Peters and
                  Tim E. Putman and
                  N{\'{u}}ria Queralt{-}Rosinach and
                  Kent A. Shefchek and
                  Harold Solbrig and
                  Anne E. Thessen and
                  Tania Tudorache and
                  Nicole A. Vasilevsky and
                  Alex H. Wagner and
                  Christopher J. Mungall},
  title        = {A Simple Standard for Sharing Ontological Mappings {(SSSOM)}},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2022},
  number       = {2022},
  year         = {2022},
  url          = {https://doi.org/10.1093/database/baac035},
  doi          = {10.1093/DATABASE/BAAC035},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/MatentzogluBBBB22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiyanageBDEFGHJ22,
  author       = {Isuru Udara Liyanage and
                  Tony Burdett and
                  Bert Droesbeke and
                  Karoly Erdos and
                  Rolando Fernandez and
                  Alasdair J. G. Gray and
                  Muhammad Haseeb and
                  Simon Jupp and
                  Flavia Penim and
                  Cyril Pommier and
                  Philippe Rocca{-}Serra and
                  M{\'{e}}lanie Courtot and
                  Frederik Coppens},
  title        = {{ELIXIR} biovalidator for semantic validation of life science metadata},
  journal      = {Bioinform.},
  volume       = {38},
  number       = {11},
  pages        = {3141--3142},
  year         = {2022},
  url          = {https://doi.org/10.1093/bioinformatics/btac195},
  doi          = {10.1093/BIOINFORMATICS/BTAC195},
  timestamp    = {Wed, 27 Jul 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiyanageBDEFGHJ22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/XuJGJPC22,
  author       = {Fuqi Xu and
                  Nick S. Juty and
                  Carole A. Goble and
                  Simon Jupp and
                  Helen E. Parkinson and
                  M{\'{e}}lanie Courtot},
  editor       = {Katy Wolstencroft and
                  Andrea Splendiani and
                  M. Scott Marshall and
                  Chris Baker and
                  Andra Waagmeester and
                  Marco Roos and
                  Rutger A. Vos and
                  Rianne Fijten and
                  Leyla Jael Castro},
  title        = {Features of a {FAIR} Vocabulary},
  booktitle    = {13th International Conference on Semantic Web Applications and Tools
                  for Health Care and Life Sciences, {SWAT4HCLS} 2022, Virtual Event,
                  Leiden, The Netherlands, January 10th to 14th, 2022},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {3127},
  pages        = {118--148},
  publisher    = {CEUR-WS.org},
  year         = {2022},
  url          = {https://ceur-ws.org/Vol-3127/paper-15.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:02 +0100},
  biburl       = {https://dblp.org/rec/conf/swat4ls/XuJGJPC22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GhoussainiMCPSH21,
  author       = {Maya Ghoussaini and
                  Edward Mountjoy and
                  Miguel Carmona and
                  Gareth Peat and
                  Ellen M. Schmidt and
                  Andrew Hercules and
                  Luca Fumis and
                  Alfredo Miranda and
                  Denise Carvalho{-}Silva and
                  Annalisa Buniello and
                  Tony Burdett and
                  James D. Hayhurst and
                  Jarrod Baker and
                  Javier Ferrer and
                  Asier Gonzalez{-}Uriarte and
                  Simon Jupp and
                  Mohd Anisul Karim and
                  Gautier Koscielny and
                  Sandra Machlitt{-}Northen and
                  Cinzia Malangone and
                  Zo{\"{e}} May Pendlington and
                  Paola Roncaglia and
                  Daniel Suveges and
                  Daniel Wright and
                  Olga Vrousgou and
                  Eliseo Papa and
                  Helen E. Parkinson and
                  Jacqueline A. L. MacArthur and
                  John A. Todd and
                  Jeffrey C. Barrett and
                  Jeremy Schwartzentruber and
                  David G. Hulcoop and
                  David Ochoa and
                  Ellen M. McDonagh and
                  Ian Dunham},
  title        = {Open Targets Genetics: systematic identification of trait-associated
                  genes using large-scale genetics and functional genomics},
  journal      = {Nucleic Acids Res.},
  volume       = {49},
  number       = {Database-Issue},
  pages        = {D1311--D1320},
  year         = {2021},
  url          = {https://doi.org/10.1093/nar/gkaa840},
  doi          = {10.1093/NAR/GKAA840},
  timestamp    = {Wed, 06 Dec 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/GhoussainiMCPSH21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2112-07051,
  author       = {Nicolas Matentzoglu and
                  James P. Balhoff and
                  Susan M. Bello and
                  Chris Bizon and
                  Matthew H. Brush and
                  Tiffany J. Callahan and
                  Christopher G. Chute and
                  William D. Duncan and
                  Chris T. A. Evelo and
                  Davera Gabriel and
                  John Graybeal and
                  Alasdair J. G. Gray and
                  Benjamin M. Gyori and
                  Melissa A. Haendel and
                  Henriette Harmse and
                  Nomi L. Harris and
                  Ian Harrow and
                  Harshad Hegde and
                  Amelia L. Hoyt and
                  Charles Tapley Hoyt and
                  Dazhi Jiao and
                  Ernesto Jim{\'{e}}nez{-}Ruiz and
                  Simon Jupp and
                  Hyeongsik Kim and
                  Sebastian K{\"{o}}hler and
                  Thomas Liener and
                  Qinqin Long and
                  James Malone and
                  James A. McLaughlin and
                  Julie A. McMurry and
                  Sierra A. T. Moxon and
                  Monica C. Munoz{-}Torres and
                  David Osumi{-}Sutherland and
                  James A. Overton and
                  Bjoern Peters and
                  Tim E. Putman and
                  N{\'{u}}ria Queralt{-}Rosinach and
                  Kent A. Shefchek and
                  Harold Solbrig and
                  Anne E. Thessen and
                  Tania Tudorache and
                  Nicole A. Vasilevsky and
                  Alex H. Wagner and
                  Christopher J. Mungall},
  title        = {A Simple Standard for Sharing Ontological Mappings {(SSSOM)}},
  journal      = {CoRR},
  volume       = {abs/2112.07051},
  year         = {2021},
  url          = {https://arxiv.org/abs/2112.07051},
  eprinttype    = {arXiv},
  eprint       = {2112.07051},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2112-07051.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShefchekHGMUBKC20,
  author       = {Kent A. Shefchek and
                  Nomi L. Harris and
                  Michael A. Gargano and
                  Nicolas Matentzoglu and
                  Deepak R. Unni and
                  Matthew H. Brush and
                  Dan Keith and
                  Tom Conlin and
                  Nicole A. Vasilevsky and
                  Xingmin Aaron Zhang and
                  James P. Balhoff and
                  Larry Babb and
                  Susan M. Bello and
                  Hannah Blau and
                  Yvonne M. Bradford and
                  Seth Carbon and
                  Leigh Carmody and
                  Lauren E. Chan and
                  Valentina Cipriani and
                  Alayne Cuzick and
                  Maria G. Della Rocca and
                  Nathan A. Dunn and
                  Shahim Essaid and
                  Petra Fey and
                  Christian A. Grove and
                  Jean{-}Philippe F. Gourdine and
                  Ada Hamosh and
                  Midori A. Harris and
                  Ingo Helbig and
                  Maureen E. Hoatlin and
                  Marcin P. Joachimiak and
                  Simon Jupp and
                  Kenneth B. Lett and
                  Suzanna E. Lewis and
                  Craig McNamara and
                  Zo{\"{e}} May Pendlington and
                  Clare Pilgrim and
                  Tim E. Putman and
                  Vida Ravanmehr and
                  Justin T. Reese and
                  Erin Rooney Riggs and
                  Sofia M. C. Robb and
                  Paola Roncaglia and
                  James Seager and
                  Erik Segerdell and
                  Morgan Similuk and
                  Andrea L. Storm and
                  Courtney Thaxon and
                  Anne E. Thessen and
                  Julius O. B. Jacobsen and
                  Julie A. McMurry and
                  Tudor Groza and
                  Sebastian K{\"{o}}hler and
                  Damian Smedley and
                  Peter N. Robinson and
                  Christopher J. Mungall and
                  Melissa A. Haendel and
                  Monica C. Munoz{-}Torres and
                  David Osumi{-}Sutherland},
  title        = {The Monarch Initiative in 2019: an integrative data and analytic platform
                  connecting phenotypes to genotypes across species},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Database-Issue},
  pages        = {D704--D715},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkz997},
  doi          = {10.1093/NAR/GKZ997},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/ShefchekHGMUBKC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PapatheodorouMM20,
  author       = {Irene Papatheodorou and
                  Pablo A. Moreno and
                  Jonathan R. Manning and
                  Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
                  Nancy George and
                  Silvie Fexova and
                  Nuno A. Fonseca and
                  Anja F{\"{u}}llgrabe and
                  Matthew Green and
                  Ni Huang and
                  Laura Huerta and
                  Haider Iqbal and
                  Monica Jianu and
                  Suhaib Mohammed and
                  Lingyun Zhao and
                  Andrew F. Jarnuczak and
                  Simon Jupp and
                  John C. Marioni and
                  Kerstin B. Meyer and
                  Robert Petryszak and
                  Cesar Augusto Prada Medina and
                  Carlos Talavera{-}L{\'{o}}pez and
                  Sarah A. Teichmann and
                  Juan Antonio Vizca{\'{\i}}no and
                  Alvis Brazma},
  title        = {Expression Atlas update: from tissues to single cells},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Database-Issue},
  pages        = {D77--D83},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkz947},
  doi          = {10.1093/NAR/GKZ947},
  timestamp    = {Wed, 24 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PapatheodorouMM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/HarmseCRMOJ19,
  author       = {Henriette Harmse and
                  M{\'{e}}lanie Courtot and
                  Warren Read and
                  Nicolas Matentzoglu and
                  David Osumi{-}Sutherland and
                  Simon Jupp},
  editor       = {Alexander D. Diehl and
                  William D. Duncan and
                  Gloria Sanso},
  title        = {Where Does an Ontology Start?},
  booktitle    = {Proceedings of the 10th International Conference on Biomedical Ontology
                  {(ICBO} 2019), Buffalo, New York, USA, July 30 - August 2, 2019},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {2931},
  pages        = {1},
  publisher    = {CEUR-WS.org},
  year         = {2019},
  url          = {https://ceur-ws.org/Vol-2931/ICBO\_2019\_paper\_44.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:22:23 +0100},
  biburl       = {https://dblp.org/rec/conf/icbo/HarmseCRMOJ19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/KatayamaKMKKKOWWYYAAABBBB19,
  author       = {Toshiaki Katayama and
                  Shuichi Kawashima and
                  Gos Micklem and
                  Shin Kawano and
                  Jin{-}Dong Kim and
                  Simon Kocbek and
                  Shinobu Okamoto and
                  Yue Wang and
                  Hongyan Wu and
                  Atsuko Yamaguchi and
                  Yasunori Yamamoto and
                  Erick Antezana and
                  Kiyoko F. Aoki{-}Kinoshita and
                  Kazuharu Arakawa and
                  Masaki Banno and
                  Joachim Baran and
                  Jerven T. Bolleman and
                  Raoul Jean Pierre Bonnal and
                  Hidemasa Bono and
                  Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis and
                  Robert M. Buels and
                  Matthew P. Campbell and
                  Hirokazu Chiba and
                  Peter J. A. Cock and
                  Kevin Bretonnel Cohen and
                  Michel Dumontier and
                  Takatomo Fujisawa and
                  Toyofumi Fujiwara and
                  Leyla J. Garc{\'{\i}}a and
                  Pascale Gaudet and
                  Emi Hattori and
                  Robert Hoehndorf and
                  Kotone Itaya and
                  Maori Ito and
                  Daniel Jamieson and
                  Simon Jupp and
                  Nick S. Juty and
                  Alex Kalderimis and
                  Fumihiro Kato and
                  Hideya Kawaji and
                  Takeshi Kawashima and
                  Akira R. Kinjo and
                  Yusuke Komiyama and
                  Masaaki Kotera and
                  Tatsuya Kushida and
                  James Malone and
                  Masaaki Matsubara and
                  Satoshi Mizuno and
                  Sayaka Mizutani and
                  Hiroshi Mori and
                  Yuki Moriya and
                  Katsuhiko Murakami and
                  Takeru Nakazato and
                  Hiroyo Nishide and
                  Yosuke Nishimura and
                  Soichi Ogishima and
                  Tazro Ohta and
                  Shujiro Okuda and
                  Hiromasa Ono and
                  Yasset P{\'{e}}rez{-}Riverol and
                  Daisuke Shinmachi and
                  Andrea Splendiani and
                  Francesco Strozzi and
                  Shinya Suzuki and
                  Junichi Takehara and
                  Mark Thompson and
                  Toshiaki Tokimatsu and
                  Ikuo Uchiyama and
                  Karin Verspoor and
                  Mark D. Wilkinson and
                  Sarala M. Wimalaratne and
                  Issaku Yamada and
                  Nozomi Yamamoto and
                  Masayuki Yarimizu and
                  Shoko Kawamoto and
                  Toshihisa Takagi},
  title        = {BioHackathon series in 2013 and 2014: improvements of semantic interoperability
                  in life science data and services},
  journal      = {F1000Research},
  volume       = {8},
  pages        = {1677},
  year         = {2019},
  url          = {https://doi.org/10.12688/f1000research.18238.1},
  doi          = {10.12688/F1000RESEARCH.18238.1},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/f1000research/KatayamaKMKKKOWWYYAAABBBB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/WelterJO18,
  author       = {Danielle Welter and
                  Simon Jupp and
                  David Osumi{-}Sutherland},
  editor       = {Pankaj Jaiswal and
                  Laurel Cooper and
                  Melissa A. Haendel and
                  Christopher J. Mungall},
  title        = {Human Cell Atlas Ontology},
  booktitle    = {Proceedings of the 9th International Conference on Biological Ontology
                  {(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {2285},
  publisher    = {CEUR-WS.org},
  year         = {2018},
  url          = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_40.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:22:24 +0100},
  biburl       = {https://dblp.org/rec/conf/icbo/WelterJO18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OngSJPH17,
  author       = {Edison Ong and
                  Sirarat Sarntivijai and
                  Simon Jupp and
                  Helen E. Parkinson and
                  Yongqun He},
  title        = {Comparison, alignment, and synchronization of cell line information
                  between {CLO} and {EFO}},
  journal      = {{BMC} Bioinform.},
  volume       = {18},
  number       = {{S-17}},
  pages        = {25--33},
  year         = {2017},
  url          = {https://doi.org/10.1186/s12859-017-1979-z},
  doi          = {10.1186/S12859-017-1979-Z},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/OngSJPH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/JuppLSVBP17,
  author       = {Simon Jupp and
                  Thomas Liener and
                  Sirarat Sarntivijai and
                  Olga Vrousgou and
                  Tony Burdett and
                  Helen E. Parkinson},
  editor       = {Matthew Horridge and
                  Phillip Lord and
                  Jennifer D. Warrender},
  title        = {OxO - {A} Gravy of Ontology Mapping Extracts},
  booktitle    = {Proceedings of the 8th International Conference on Biomedical Ontology
                  {(ICBO} 2017), Newcastle-upon-Tyne, United Kingdom, September 13th
                  - 15th, 2017},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {2137},
  publisher    = {CEUR-WS.org},
  year         = {2017},
  url          = {https://ceur-ws.org/Vol-2137/paper\_27.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:22:24 +0100},
  biburl       = {https://dblp.org/rec/conf/icbo/JuppLSVBP17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ConwayKFSCMCJ16,
  author       = {Mike Conway and
                  Artem Khojoyan and
                  Fariba Fana and
                  William Scuba and
                  Melissa Castine and
                  Danielle L. Mowery and
                  Wendy W. Chapman and
                  Simon Jupp},
  title        = {Developing a web-based {SKOS} editor},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {5},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-015-0043-z},
  doi          = {10.1186/S13326-015-0043-Z},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/ConwayKFSCMCJ16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SarntivijaiVJSB16,
  author       = {Sirarat Sarntivijai and
                  Drashtti Vasant and
                  Simon Jupp and
                  Gary Saunders and
                  A. Patr{\'{\i}}cia Bento and
                  Daniel Gonzalez and
                  Joanna Betts and
                  Samiul Hasan and
                  Gautier Koscielny and
                  Ian Dunham and
                  Helen E. Parkinson and
                  James Malone},
  title        = {Linking rare and common disease: mapping clinical disease-phenotypes
                  to ontologies in therapeutic target validation},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {8},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0051-7},
  doi          = {10.1186/S13326-016-0051-7},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/SarntivijaiVJSB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/JuppBWSPM16,
  author       = {Simon Jupp and
                  Tony Burdett and
                  Danielle Welter and
                  Sirarat Sarntivijai and
                  Helen E. Parkinson and
                  James Malone},
  title        = {Webulous and the Webulous Google Add-On - a web service and application
                  for ontology building from templates},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {17},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0055-3},
  doi          = {10.1186/S13326-016-0055-3},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/JuppBWSPM16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/JuppMBHWEPR16,
  author       = {Simon Jupp and
                  James Malone and
                  Tony Burdett and
                  Jean{-}Karim H{\'{e}}rich{\'{e}} and
                  Eleanor Williams and
                  Jan Ellenberg and
                  Helen E. Parkinson and
                  Gabriella Rustici},
  title        = {The cellular microscopy phenotype ontology},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {28},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0074-0},
  doi          = {10.1186/S13326-016-0074-0},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/JuppMBHWEPR16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PetryszakKTFBBF16,
  author       = {Robert Petryszak and
                  Maria Keays and
                  Y. Amy Tang and
                  Nuno A. Fonseca and
                  Elisabet Barrera and
                  Tony Burdett and
                  Anja F{\"{u}}llgrabe and
                  Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
                  Simon Jupp and
                  Satu Koskinen and
                  Oliver Mannion and
                  Laura Huerta and
                  Karine Megy and
                  Catherine Snow and
                  Eleanor Williams and
                  Mitra Barzine and
                  Emma Hastings and
                  Hendrik Weisser and
                  James C. Wright and
                  Pankaj Jaiswal and
                  Wolfgang Huber and
                  Jyoti Choudhary and
                  Helen E. Parkinson and
                  Alvis Brazma},
  title        = {Expression Atlas update - an integrated database of gene and protein
                  expression in humans, animals and plants},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {746--752},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv1045},
  doi          = {10.1093/NAR/GKV1045},
  timestamp    = {Tue, 26 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PetryszakKTFBBF16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MaloneSJHPB16,
  author       = {James Malone and
                  Robert Stevens and
                  Simon Jupp and
                  Tom Hancocks and
                  Helen E. Parkinson and
                  Catherine Brooksbank},
  title        = {Ten Simple Rules for Selecting a Bio-ontology},
  journal      = {PLoS Comput. Biol.},
  volume       = {12},
  number       = {2},
  year         = {2016},
  url          = {https://doi.org/10.1371/journal.pcbi.1004743},
  doi          = {10.1371/JOURNAL.PCBI.1004743},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/MaloneSJHPB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/edbt/VrousgouBPJ16,
  author       = {Olga Vrousgou and
                  Tony Burdett and
                  Helen E. Parkinson and
                  Simon Jupp},
  editor       = {Themis Palpanas and
                  Kostas Stefanidis},
  title        = {Biomedical Ontology Evolution in the {EMBL-EBI} Ontology Lookup Service},
  booktitle    = {Proceedings of the Workshops of the {EDBT/ICDT} 2016 Joint Conference,
                  {EDBT/ICDT} Workshops 2016, Bordeaux, France, March 15, 2016},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1558},
  publisher    = {CEUR-WS.org},
  year         = {2016},
  url          = {https://ceur-ws.org/Vol-1558/paper12.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:44 +0100},
  biburl       = {https://dblp.org/rec/conf/edbt/VrousgouBPJ16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/LienerBJ16,
  author       = {Thomas Liener and
                  Tony Burdett and
                  Simon Jupp},
  editor       = {Adrian Paschke and
                  Albert Burger and
                  Andrea Splendiani and
                  M. Scott Marshall and
                  Paolo Romano},
  title        = {Updates from the {EMBL-EBI} {RDF} platform},
  booktitle    = {Proceedings of the 9th International Conference Semantic Web Applications
                  and Tools for Life Sciences, Amsterdam, The Netherlands, December
                  5-8, 2016},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1795},
  publisher    = {CEUR-WS.org},
  year         = {2016},
  url          = {https://ceur-ws.org/Vol-1795/paper39.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:02 +0100},
  biburl       = {https://dblp.org/rec/conf/swat4ls/LienerBJ16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/JuppBLP15,
  author       = {Simon Jupp and
                  Tony Burdett and
                  Catherine Leroy and
                  Helen E. Parkinson},
  editor       = {James Malone and
                  Robert Stevens and
                  Kerstin Forsberg and
                  Andrea Splendiani},
  title        = {A new Ontology Lookup Service at {EMBL-EBI}},
  booktitle    = {Proceedings of the 8th Semantic Web Applications and Tools for Life
                  Sciences International Conference, Cambridge UK, December 7-10, 2015},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1546},
  pages        = {118--119},
  publisher    = {CEUR-WS.org},
  year         = {2015},
  url          = {https://ceur-ws.org/Vol-1546/paper\_29.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:03 +0100},
  biburl       = {https://dblp.org/rec/conf/swat4ls/JuppBLP15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/JuppWBPM15,
  author       = {Simon Jupp and
                  Danielle Welter and
                  Tony Burdett and
                  Helen E. Parkinson and
                  James Malone},
  editor       = {James Malone and
                  Robert Stevens and
                  Kerstin Forsberg and
                  Andrea Splendiani},
  title        = {Collaborative Ontology Development Using the Webulous Architecture
                  and Google App},
  booktitle    = {Proceedings of the 8th Semantic Web Applications and Tools for Life
                  Sciences International Conference, Cambridge UK, December 7-10, 2015},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1546},
  pages        = {120--121},
  publisher    = {CEUR-WS.org},
  year         = {2015},
  url          = {https://ceur-ws.org/Vol-1546/paper\_32.pdf},
  timestamp    = {Fri, 10 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/swat4ls/JuppWBPM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JuppMBBDGGGLRWMNPBJ14,
  author       = {Simon Jupp and
                  James Malone and
                  Jerven T. Bolleman and
                  Marco Brandizi and
                  Mark Davies and
                  Leyla J. Garc{\'{\i}}a and
                  Anna Gaulton and
                  Sebastien Gehant and
                  Camille Laibe and
                  Nicole Redaschi and
                  Sarala M. Wimalaratne and
                  Maria Jesus Martin and
                  Nicolas Le Nov{\`{e}}re and
                  Helen E. Parkinson and
                  Ewan Birney and
                  Andrew M. Jenkinson},
  title        = {The {EBI} {RDF} platform: linked open data for the life sciences},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {9},
  pages        = {1338--1339},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btt765},
  doi          = {10.1093/BIOINFORMATICS/BTT765},
  timestamp    = {Wed, 21 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JuppMBBDGGGLRWMNPBJ14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PetryszakBFFGHHJKKMMMMRTTWMPB14,
  author       = {Robert Petryszak and
                  Tony Burdett and
                  Benedetto Fiorelli and
                  Nuno A. Fonseca and
                  Mar Gonzalez{-}Porta and
                  Emma Hastings and
                  Wolfgang Huber and
                  Simon Jupp and
                  Maria Keays and
                  Nataliya Kryvych and
                  Julie A. McMurry and
                  John C. Marioni and
                  James Malone and
                  Karine Megy and
                  Gabriella Rustici and
                  Y. Amy Tang and
                  Jan Taubert and
                  Eleanor Williams and
                  Oliver Mannion and
                  Helen E. Parkinson and
                  Alvis Brazma},
  title        = {Expression Atlas update - a database of gene and transcript expression
                  from microarray- and sequencing-based functional genomics experiments},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Database-Issue},
  pages        = {926--932},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gkt1270},
  doi          = {10.1093/NAR/GKT1270},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PetryszakBFFGHHJKKMMMMRTTWMPB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/JuppMG14,
  author       = {Simon Jupp and
                  James Malone and
                  Alasdair J. G. Gray},
  editor       = {Jun Zhao and
                  Marieke van Erp and
                  Carsten Ke{\ss}ler and
                  Tomi Kauppinen and
                  Jacco van Ossenbruggen and
                  Willem Robert van Hage},
  title        = {Capturing Provenance for a Linkset of Convenience},
  booktitle    = {Proceedings of the 4th Workshop on Linked Science 2014 - Making Sense
                  Out of Data {(LISC2014)} co-located with the 13th International Semantic
                  Web Conference {(ISWC} 2014), Riva del Garda, Italy, October 19, 2014},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1282},
  pages        = {71--75},
  publisher    = {CEUR-WS.org},
  year         = {2014},
  url          = {https://ceur-ws.org/Vol-1282/lisc2014\_submission\_7.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:09 +0100},
  biburl       = {https://dblp.org/rec/conf/semweb/JuppMG14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MoulosKJSBS13,
  author       = {Panagiotis Moulos and
                  Julie Klein and
                  Simon Jupp and
                  Robert Stevens and
                  Jean{-}Loup Bascands and
                  Joost P. Schanstra},
  title        = {The KUPNetViz: a biological network viewer for multiple -omics datasets
                  in kidney diseases},
  journal      = {{BMC} Bioinform.},
  volume       = {14},
  pages        = {235},
  year         = {2013},
  url          = {https://doi.org/10.1186/1471-2105-14-235},
  doi          = {10.1186/1471-2105-14-235},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/MoulosKJSBS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/WolstencroftOHJKSPMSG13,
  author       = {Katherine Wolstencroft and
                  Stuart Owen and
                  Matthew Horridge and
                  Simon Jupp and
                  Olga Krebs and
                  Jacky L. Snoep and
                  Franco B. du Preez and
                  Wolfgang M{\"{u}}ller and
                  Robert Stevens and
                  Carole A. Goble},
  title        = {Stealthy annotation of experimental biology by spreadsheets},
  journal      = {Concurr. Comput. Pract. Exp.},
  volume       = {25},
  number       = {4},
  pages        = {467--480},
  year         = {2013},
  url          = {https://doi.org/10.1002/cpe.2941},
  doi          = {10.1002/CPE.2941},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/concurrency/WolstencroftOHJKSPMSG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/owled/MaloneBIJVWP13,
  author       = {James Malone and
                  Tony Burdett and
                  Jon C. Ison and
                  Simon Jupp and
                  Drashtti Vasant and
                  Danielle Welter and
                  Helen E. Parkinson},
  editor       = {Mariano Rodriguez{-}Muro and
                  Simon Jupp and
                  Kavitha Srinivas},
  title        = {Putting {OWL} into Production at the European Bioinformatics Institute},
  booktitle    = {Proceedings of the 10th International Workshop on {OWL:} Experiences
                  and Directions {(OWLED} 2013) co-located with 10th Extended Semantic
                  Web Conference {(ESWC} 2013), Montpellier, France, May 26-27, 2013},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1080},
  publisher    = {CEUR-WS.org},
  year         = {2013},
  url          = {https://ceur-ws.org/Vol-1080/owled2013\_5.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:02 +0100},
  biburl       = {https://dblp.org/rec/conf/owled/MaloneBIJVWP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/owled/2013,
  editor       = {Mariano Rodriguez{-}Muro and
                  Simon Jupp and
                  Kavitha Srinivas},
  title        = {Proceedings of the 10th International Workshop on {OWL:} Experiences
                  and Directions {(OWLED} 2013) co-located with 10th Extended Semantic
                  Web Conference {(ESWC} 2013), Montpellier, France, May 26-27, 2013},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1080},
  publisher    = {CEUR-WS.org},
  year         = {2013},
  url          = {https://ceur-ws.org/Vol-1080},
  urn          = {urn:nbn:de:0074-1080-7},
  timestamp    = {Fri, 10 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/owled/2013.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/JuppSH12,
  author       = {Simon Jupp and
                  Robert Stevens and
                  Robert Hoehndorf},
  title        = {Logical Gene Ontology Annotations {(GOAL):} exploring gene ontology
                  annotations with {OWL}},
  journal      = {J. Biomed. Semant.},
  volume       = {3},
  number       = {{S-1}},
  pages        = {S3},
  year         = {2012},
  url          = {http://www.jbiomedsem.com/content/3/S1/S3},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/JuppSH12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JuppHIKOSWS12,
  author       = {Simon Jupp and
                  Matthew Horridge and
                  Luigi Iannone and
                  Julie Klein and
                  Stuart Owen and
                  Joost Schanstra and
                  Katy Wolstencroft and
                  Robert Stevens},
  title        = {Populous: a tool for building {OWL} ontologies from templates},
  journal      = {{BMC} Bioinform.},
  volume       = {13},
  number       = {{S-1}},
  pages        = {S5},
  year         = {2012},
  url          = {https://doi.org/10.1186/1471-2105-13-S1-S5},
  doi          = {10.1186/1471-2105-13-S1-S5},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/JuppHIKOSWS12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peng/KappesLJPH12,
  author       = {Jens Kappes and
                  Mathias Liewald and
                  Simon Jupp and
                  Christoph Pirchl and
                  Roman Herstelle},
  title        = {Designing superplastic forming process of a developmental {AA5456}
                  using pneumatic bulge test experiments and FE-simulation},
  journal      = {Prod. Eng.},
  volume       = {6},
  number       = {3},
  pages        = {219--228},
  year         = {2012},
  url          = {https://doi.org/10.1007/s11740-012-0363-0},
  doi          = {10.1007/S11740-012-0363-0},
  timestamp    = {Thu, 06 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/peng/KappesLJPH12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/JuppGMS12,
  author       = {Simon Jupp and
                  Andrew Gibson and
                  James Malone and
                  Robert Stevens},
  editor       = {Ronald Cornet and
                  Robert Stevens},
  title        = {Taking a view on bio-ontologies},
  booktitle    = {Proceedings of the 3rd International Conference on Biomedical Ontology
                  {(ICBO} 2012), {KR-MED} Series, Graz, Austria, July 21-25, 2012},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {897},
  publisher    = {CEUR-WS.org},
  year         = {2012},
  url          = {https://ceur-ws.org/Vol-897/session4-paper22.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:22:23 +0100},
  biburl       = {https://dblp.org/rec/conf/icbo/JuppGMS12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/JuppPM12,
  author       = {Simon Jupp and
                  Helen E. Parkinson and
                  James Malone},
  editor       = {Adrian Paschke and
                  Albert Burger and
                  Paolo Romano and
                  M. Scott Marshall and
                  Andrea Splendiani},
  title        = {Semantic Web Atlas: Putting Gene Expression Data into Biological Context},
  booktitle    = {Proceedings of the 5th International Workshop on Semantic Web Applications
                  and Tools for Life Sciences, Paris, France, November 28-30, 2012},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {952},
  publisher    = {CEUR-WS.org},
  year         = {2012},
  url          = {https://ceur-ws.org/Vol-952/paper\_11.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:02 +0100},
  biburl       = {https://dblp.org/rec/conf/swat4ls/JuppPM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/JuppKSS11,
  author       = {Simon Jupp and
                  Julie Klein and
                  Joost Schanstra and
                  Robert Stevens},
  title        = {Developing a kidney and urinary pathway knowledge base},
  journal      = {J. Biomed. Semant.},
  volume       = {2},
  number       = {{S-2}},
  pages        = {S7},
  year         = {2011},
  url          = {http://www.jbiomedsem.com/content/2/S2/S7},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/JuppKSS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/StevensJ0S11,
  author       = {Robert Stevens and
                  Simon Jupp and
                  Julie Klein and
                  Joost Schanstra},
  title        = {Using semantic web technologies to manage complexity and change in
                  biomedical data},
  booktitle    = {33rd Annual International Conference of the {IEEE} Engineering in
                  Medicine and Biology Society, {EMBC} 2011, Boston, MA, USA, August
                  30 - Sept. 3, 2011},
  pages        = {3708--3711},
  publisher    = {{IEEE}},
  year         = {2011},
  url          = {https://doi.org/10.1109/IEMBS.2011.6090629},
  doi          = {10.1109/IEMBS.2011.6090629},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/embc/StevensJ0S11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/JuppHIKOSWS11,
  author       = {Simon Jupp and
                  Matthew Horridge and
                  Luigi Iannone and
                  Julie Klein and
                  Stuart Owen and
                  Joost Schanstra and
                  Katy Wolstencroft and
                  Robert Stevens},
  editor       = {Olivier Bodenreider and
                  Maryann E. Martone and
                  Alan Ruttenberg},
  title        = {Populous: {A} Tool for Populating an Ontology},
  booktitle    = {Proceedings of the 2nd International Conference on Biomedical Ontology,
                  Buffalo, NY, USA, July 26-30, 2011},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {833},
  publisher    = {CEUR-WS.org},
  year         = {2011},
  url          = {https://ceur-ws.org/Vol-833/paper53.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:22:24 +0100},
  biburl       = {https://dblp.org/rec/conf/icbo/JuppHIKOSWS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/JuppHIKOSSW10,
  author       = {Simon Jupp and
                  Matthew Horridge and
                  Luigi Iannone and
                  Julie Klein and
                  Stuart Owen and
                  Joost Schanstra and
                  Robert Stevens and
                  Katy Wolstencroft},
  editor       = {Albert Burger and
                  M. Scott Marshall and
                  Paolo Romano and
                  Adrian Paschke and
                  Andrea Splendiani},
  title        = {Populous: {A} Tool for Populating Templates for {OWL} Ontologies},
  booktitle    = {Proceedings of the Workshop on Semantic Web Applications and Tools
                  for Life Sciences, Berlin, Germany, December 10, 2010},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {698},
  publisher    = {CEUR-WS.org},
  year         = {2010},
  url          = {https://ceur-ws.org/Vol-698/paper7.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:03 +0100},
  biburl       = {https://dblp.org/rec/conf/swat4ls/JuppHIKOSSW10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1012-1745,
  author       = {Simon Jupp and
                  Matthew Horridge and
                  Luigi Iannone and
                  Julie Klein and
                  Stuart Owen and
                  Joost Schanstra and
                  Robert Stevens and
                  Katy Wolstencroft},
  title        = {Populous: {A} tool for populating ontology templates},
  journal      = {CoRR},
  volume       = {abs/1012.1745},
  year         = {2010},
  url          = {http://arxiv.org/abs/1012.1745},
  eprinttype    = {arXiv},
  eprint       = {1012.1745},
  timestamp    = {Mon, 21 Jan 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1012-1745.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OliverDQAHKSJKSJM09,
  author       = {Helen Oliver and
                  Gayo Diallo and
                  Ed de Quincey and
                  Dimitra Alexopoulou and
                  Bianca Habermann and
                  Patty Kostkova and
                  Michael Schroeder and
                  Simon Jupp and
                  Khaled Khelif and
                  Robert Stevens and
                  Gawesh Jawaheer and
                  Gemma Madle},
  title        = {A user-centred evaluation framework for the Sealife semantic web browsers},
  journal      = {{BMC} Bioinform.},
  volume       = {10},
  number       = {{S-10}},
  pages        = {14},
  year         = {2009},
  url          = {https://doi.org/10.1186/1471-2105-10-S10-S14},
  doi          = {10.1186/1471-2105-10-S10-S14},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/OliverDQAHKSJKSJM09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrewsterJLSSZ09,
  author       = {Christopher Brewster and
                  Simon Jupp and
                  Joanne S. Luciano and
                  David M. Shotton and
                  Robert D. Stevens and
                  Ziqi Zhang},
  title        = {Issues in learning an ontology from text},
  journal      = {{BMC} Bioinform.},
  volume       = {10},
  number       = {{S-5}},
  year         = {2009},
  url          = {https://doi.org/10.1186/1471-2105-10-S5-S1},
  doi          = {10.1186/1471-2105-10-S5-S1},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/BrewsterJLSSZ09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/esws/JuppBS09,
  author       = {Simon Jupp and
                  Sean Bechhofer and
                  Robert Stevens},
  editor       = {Lora Aroyo and
                  Paolo Traverso and
                  Fabio Ciravegna and
                  Philipp Cimiano and
                  Tom Heath and
                  Eero Hyv{\"{o}}nen and
                  Riichiro Mizoguchi and
                  Eyal Oren and
                  Marta Sabou and
                  Elena Simperl},
  title        = {A Flexible {API} and Editor for {SKOS}},
  booktitle    = {The Semantic Web: Research and Applications, 6th European Semantic
                  Web Conference, {ESWC} 2009, Heraklion, Crete, Greece, May 31-June
                  4, 2009, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5554},
  pages        = {506--520},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-02121-3\_38},
  doi          = {10.1007/978-3-642-02121-3\_38},
  timestamp    = {Fri, 23 Jun 2023 11:56:12 +0200},
  biburl       = {https://dblp.org/rec/conf/esws/JuppBS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iat/QuinceyOKJMDASHKJS09,
  author       = {Ed de Quincey and
                  Helen Oliver and
                  Patty Kostkova and
                  Gawesh Jawaheer and
                  Gemma Madle and
                  Gayo Diallo and
                  Dimitra Alexopoulou and
                  Michael Schroeder and
                  Bianca Habermann and
                  Khaled Khelif and
                  Simon Jupp and
                  Robert Stevens},
  title        = {Mining for Patterns of Semantic Link Usage: Do Domain Users Actually
                  Like Semantic Browsing?},
  booktitle    = {Proceedings of the 2009 {IEEE/WIC/ACM} International Conference on
                  Web Intelligence and International Conference on Intelligent Agent
                  Technology - Workshops, Milan, Italy, 15-18 September 2009},
  pages        = {50--53},
  publisher    = {{IEEE} Computer Society},
  year         = {2009},
  url          = {https://doi.org/10.1109/WI-IAT.2009.228},
  doi          = {10.1109/WI-IAT.2009.228},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/iat/QuinceyOKJMDASHKJS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/internet/BechhoferYSJH08,
  author       = {Sean Bechhofer and
                  Yeliz Yesilada and
                  Robert Stevens and
                  Simon Jupp and
                  Bernard Horan},
  title        = {Using Ontologies and Vocabularies for Dynamic Linking},
  journal      = {{IEEE} Internet Comput.},
  volume       = {12},
  number       = {3},
  pages        = {32--39},
  year         = {2008},
  url          = {https://doi.org/10.1109/MIC.2008.68},
  doi          = {10.1109/MIC.2008.68},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/internet/BechhoferYSJH08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/DialloKJJS08,
  author       = {Gayo Diallo and
                  Patty Kostkova and
                  Gawesh Jawaheer and
                  Simon Jupp and
                  Robert Stevens},
  title        = {Process of Building a Vocabulary for the Infection Domain},
  booktitle    = {Proceedings of the Twenty-First {IEEE} International Symposium on
                  Computer-Based Medical Systems, June 17-19, 2008, Jyv{\"{a}}skyl{\"{a}},
                  Finland},
  pages        = {308--313},
  publisher    = {{IEEE} Computer Society},
  year         = {2008},
  url          = {https://doi.org/10.1109/CBMS.2008.44},
  doi          = {10.1109/CBMS.2008.44},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cbms/DialloKJJS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/owled/JuppBS08,
  author       = {Simon Jupp and
                  Sean Bechhofer and
                  Robert Stevens},
  editor       = {Catherine Dolbear and
                  Alan Ruttenberg and
                  Ulrike Sattler},
  title        = {{SKOS} with {OWL:} Don't be Full-ish!},
  booktitle    = {Proceedings of the Fifth {OWLED} Workshop on {OWL:} Experiences and
                  Directions, collocated with the 7th International Semantic Web Conference
                  (ISWC-2008), Karlsruhe, Germany, October 26-27, 2008},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {432},
  publisher    = {CEUR-WS.org},
  year         = {2008},
  url          = {https://ceur-ws.org/Vol-432/owled2008eu\_submission\_22.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:02 +0100},
  biburl       = {https://dblp.org/rec/conf/owled/JuppBS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/JuppBS08,
  author       = {Simon Jupp and
                  Sean Bechhofer and
                  Robert Stevens},
  editor       = {Christian Bizer and
                  Anupam Joshi},
  title        = {A Flexible {API} and Editor for {SKOS}},
  booktitle    = {Proceedings of the Poster and Demonstration Session at the 7th International
                  Semantic Web Conference (ISWC2008), Karlsruhe, Germany, October 28,
                  2008},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {401},
  publisher    = {CEUR-WS.org},
  year         = {2008},
  url          = {https://ceur-ws.org/Vol-401/iswc2008pd\_submission\_88.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:06 +0100},
  biburl       = {https://dblp.org/rec/conf/semweb/JuppBS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/DialloMJKASJK08,
  author       = {Gayo Diallo and
                  Gemma Madle and
                  Gawesh Jawaheer and
                  Patty Kostkova and
                  Dimitra Alexopoulou and
                  Robert Stevens and
                  Simon Jupp and
                  Khaled Khelif},
  editor       = {Albert Burger and
                  Adrian Paschke and
                  Paolo Romano and
                  Andrea Splendiani},
  title        = {A User-Centred Evaluation Framework for the SeaLife Semantic Web Browsers},
  booktitle    = {Proceedings of the Workshop on Semantic Web Applications and Tools
                  for Life Sciences {(} {SWAT4LS} {)} Edinburgh, United Kingdom, November
                  28, 2008},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {435},
  publisher    = {CEUR-WS.org},
  year         = {2008},
  url          = {https://ceur-ws.org/Vol-435/poster13.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:02 +0100},
  biburl       = {https://dblp.org/rec/conf/swat4ls/DialloMJKASJK08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/JuppSBYK08,
  author       = {Simon Jupp and
                  Robert Stevens and
                  Sean Bechhofer and
                  Yeliz Yesilada and
                  Patty Kostkova},
  editor       = {Albert Burger and
                  Adrian Paschke and
                  Paolo Romano and
                  Andrea Splendiani},
  title        = {Knowledge Representation for Web Navigation},
  booktitle    = {Proceedings of the Workshop on Semantic Web Applications and Tools
                  for Life Sciences {(} {SWAT4LS} {)} Edinburgh, United Kingdom, November
                  28, 2008},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {435},
  publisher    = {CEUR-WS.org},
  year         = {2008},
  url          = {https://ceur-ws.org/Vol-435/paper03.pdf},
  timestamp    = {Fri, 10 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/swat4ls/JuppSBYK08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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