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ORCIDBibTeX records: Tommi S. Jaakkola
@article{DBLP:journals/corr/abs-2401-04082,
author = {Jason Yim and
Andrew Campbell and
Emile Mathieu and
Andrew Y. K. Foong and
Michael Gastegger and
Jos{\'{e}} Jim{\'{e}}nez{-}Luna and
Sarah Lewis and
Victor Garcia Satorras and
Bastiaan S. Veeling and
Frank No{\'{e}} and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Improved motif-scaffolding with {SE(3)} flow matching},
journal = {CoRR},
volume = {abs/2401.04082},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2401.04082},
doi = {10.48550/ARXIV.2401.04082},
eprinttype = {arXiv},
eprint = {2401.04082},
timestamp = {Fri, 26 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2401-04082.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2402-01929,
author = {Menghua Wu and
Yujia Bao and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Sample, estimate, aggregate: {A} recipe for causal discovery foundation
models},
journal = {CoRR},
volume = {abs/2402.01929},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2402.01929},
doi = {10.48550/ARXIV.2402.01929},
eprinttype = {arXiv},
eprint = {2402.01929},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2402-01929.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2402-04845,
author = {Bowen Jing and
Bonnie Berger and
Tommi S. Jaakkola},
title = {AlphaFold Meets Flow Matching for Generating Protein Ensembles},
journal = {CoRR},
volume = {abs/2402.04845},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2402.04845},
doi = {10.48550/ARXIV.2402.04845},
eprinttype = {arXiv},
eprint = {2402.04845},
timestamp = {Thu, 15 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2402-04845.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2402-04997,
author = {Andrew Campbell and
Jason Yim and
Regina Barzilay and
Tom Rainforth and
Tommi S. Jaakkola},
title = {Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows
with Applications to Protein Co-Design},
journal = {CoRR},
volume = {abs/2402.04997},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2402.04997},
doi = {10.48550/ARXIV.2402.04997},
eprinttype = {arXiv},
eprint = {2402.04997},
timestamp = {Thu, 15 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2402-04997.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2402-05841,
author = {Hannes St{\"{a}}rk and
Bowen Jing and
Chenyu Wang and
Gabriele Corso and
Bonnie Berger and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Dirichlet Flow Matching with Applications to {DNA} Sequence Design},
journal = {CoRR},
volume = {abs/2402.05841},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2402.05841},
doi = {10.48550/ARXIV.2402.05841},
eprinttype = {arXiv},
eprint = {2402.05841},
timestamp = {Thu, 15 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2402-05841.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2402-18396,
author = {Gabriele Corso and
Arthur Deng and
Benjamin Fry and
Nicholas Polizzi and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Deep Confident Steps to New Pockets: Strategies for Docking Generalization},
journal = {CoRR},
volume = {abs/2402.18396},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2402.18396},
doi = {10.48550/ARXIV.2402.18396},
eprinttype = {arXiv},
eprint = {2402.18396},
timestamp = {Mon, 25 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2402-18396.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/AjayDGTJA23,
author = {Anurag Ajay and
Yilun Du and
Abhi Gupta and
Joshua B. Tenenbaum and
Tommi S. Jaakkola and
Pulkit Agrawal},
title = {Is Conditional Generative Modeling all you need for Decision Making?},
booktitle = {The Eleventh International Conference on Learning Representations,
{ICLR} 2023, Kigali, Rwanda, May 1-5, 2023},
publisher = {OpenReview.net},
year = {2023},
url = {https://openreview.net/pdf?id=sP1fo2K9DFG},
timestamp = {Fri, 30 Jun 2023 14:38:38 +0200},
biburl = {https://dblp.org/rec/conf/iclr/AjayDGTJA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/CorsoSJBJ23,
author = {Gabriele Corso and
Hannes St{\"{a}}rk and
Bowen Jing and
Regina Barzilay and
Tommi S. Jaakkola},
title = {DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking},
booktitle = {The Eleventh International Conference on Learning Representations,
{ICLR} 2023, Kigali, Rwanda, May 1-5, 2023},
publisher = {OpenReview.net},
year = {2023},
url = {https://openreview.net/pdf?id=kKF8\_K-mBbS},
timestamp = {Fri, 30 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/CorsoSJBJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/Laufer-Goldshtein23,
author = {Bracha Laufer{-}Goldshtein and
Adam Fisch and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Efficiently Controlling Multiple Risks with Pareto Testing},
booktitle = {The Eleventh International Conference on Learning Representations,
{ICLR} 2023, Kigali, Rwanda, May 1-5, 2023},
publisher = {OpenReview.net},
year = {2023},
url = {https://openreview.net/pdf?id=cyg2YXn\_BqF},
timestamp = {Fri, 30 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/Laufer-Goldshtein23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/TrippeYTBBBJ23,
author = {Brian L. Trippe and
Jason Yim and
Doug Tischer and
David Baker and
Tamara Broderick and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Diffusion Probabilistic Modeling of Protein Backbones in 3D for the
motif-scaffolding problem},
booktitle = {The Eleventh International Conference on Learning Representations,
{ICLR} 2023, Kigali, Rwanda, May 1-5, 2023},
publisher = {OpenReview.net},
year = {2023},
url = {https://openreview.net/pdf?id=6TxBxqNME1Y},
timestamp = {Fri, 30 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/TrippeYTBBBJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/XuTJ23,
author = {Yilun Xu and
Shangyuan Tong and
Tommi S. Jaakkola},
title = {Stable Target Field for Reduced Variance Score Estimation in Diffusion
Models},
booktitle = {The Eleventh International Conference on Learning Representations,
{ICLR} 2023, Kigali, Rwanda, May 1-5, 2023},
publisher = {OpenReview.net},
year = {2023},
url = {https://openreview.net/pdf?id=WmIwYTd0YTF},
timestamp = {Fri, 30 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/XuTJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/XuLTTTJ23,
author = {Yilun Xu and
Ziming Liu and
Yonglong Tian and
Shangyuan Tong and
Max Tegmark and
Tommi S. Jaakkola},
editor = {Andreas Krause and
Emma Brunskill and
Kyunghyun Cho and
Barbara Engelhardt and
Sivan Sabato and
Jonathan Scarlett},
title = {{PFGM++:} Unlocking the Potential of Physics-Inspired Generative Models},
booktitle = {International Conference on Machine Learning, {ICML} 2023, 23-29 July
2023, Honolulu, Hawaii, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {202},
pages = {38566--38591},
publisher = {{PMLR}},
year = {2023},
url = {https://proceedings.mlr.press/v202/xu23m.html},
timestamp = {Mon, 28 Aug 2023 17:23:08 +0200},
biburl = {https://dblp.org/rec/conf/icml/XuLTTTJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/YimTBMDBJ23,
author = {Jason Yim and
Brian L. Trippe and
Valentin De Bortoli and
Emile Mathieu and
Arnaud Doucet and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Andreas Krause and
Emma Brunskill and
Kyunghyun Cho and
Barbara Engelhardt and
Sivan Sabato and
Jonathan Scarlett},
title = {{SE(3)} diffusion model with application to protein backbone generation},
booktitle = {International Conference on Machine Learning, {ICML} 2023, 23-29 July
2023, Honolulu, Hawaii, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {202},
pages = {40001--40039},
publisher = {{PMLR}},
year = {2023},
url = {https://proceedings.mlr.press/v202/yim23a.html},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/YimTBMDBJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/ZhangJZYJC23,
author = {Guanhua Zhang and
Jiabao Ji and
Yang Zhang and
Mo Yu and
Tommi S. Jaakkola and
Shiyu Chang},
editor = {Andreas Krause and
Emma Brunskill and
Kyunghyun Cho and
Barbara Engelhardt and
Sivan Sabato and
Jonathan Scarlett},
title = {Towards Coherent Image Inpainting Using Denoising Diffusion Implicit
Models},
booktitle = {International Conference on Machine Learning, {ICML} 2023, 23-29 July
2023, Honolulu, Hawaii, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {202},
pages = {41164--41193},
publisher = {{PMLR}},
year = {2023},
url = {https://proceedings.mlr.press/v202/zhang23q.html},
timestamp = {Mon, 29 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icml/ZhangJZYJC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/AjayHDLGJTKSA23,
author = {Anurag Ajay and
Seungwook Han and
Yilun Du and
Shuang Li and
Abhi Gupta and
Tommi S. Jaakkola and
Joshua B. Tenenbaum and
Leslie Pack Kaelbling and
Akash Srivastava and
Pulkit Agrawal},
editor = {Alice Oh and
Tristan Naumann and
Amir Globerson and
Kate Saenko and
Moritz Hardt and
Sergey Levine},
title = {Compositional Foundation Models for Hierarchical Planning},
booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference
on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
LA, USA, December 10 - 16, 2023},
year = {2023},
url = {http://papers.nips.cc/paper\_files/paper/2023/hash/46a126492ea6fb87410e55a58df2e189-Abstract-Conference.html},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/AjayHDLGJTKSA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/GaripovPYGKJ23,
author = {Timur Garipov and
Sebastiaan De Peuter and
Ge Yang and
Vikas K. Garg and
Samuel Kaski and
Tommi S. Jaakkola},
editor = {Alice Oh and
Tristan Naumann and
Amir Globerson and
Kate Saenko and
Moritz Hardt and
Sergey Levine},
title = {Compositional Sculpting of Iterative Generative Processes},
booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference
on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
LA, USA, December 10 - 16, 2023},
year = {2023},
url = {http://papers.nips.cc/paper\_files/paper/2023/hash/29dd9e016b7b2f15ceb0ea93dbf1fa53-Abstract-Conference.html},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/GaripovPYGKJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/XuDCTLJ23,
author = {Yilun Xu and
Mingyang Deng and
Xiang Cheng and
Yonglong Tian and
Ziming Liu and
Tommi S. Jaakkola},
editor = {Alice Oh and
Tristan Naumann and
Amir Globerson and
Kate Saenko and
Moritz Hardt and
Sergey Levine},
title = {Restart Sampling for Improving Generative Processes},
booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference
on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
LA, USA, December 10 - 16, 2023},
year = {2023},
url = {http://papers.nips.cc/paper\_files/paper/2023/hash/f2543511e5f4d4764857f9ad833a977d-Abstract-Conference.html},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/XuDCTLJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2302-00670,
author = {Yilun Xu and
Shangyuan Tong and
Tommi S. Jaakkola},
title = {Stable Target Field for Reduced Variance Score Estimation in Diffusion
Models},
journal = {CoRR},
volume = {abs/2302.00670},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2302.00670},
doi = {10.48550/ARXIV.2302.00670},
eprinttype = {arXiv},
eprint = {2302.00670},
timestamp = {Thu, 09 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2302-00670.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2302-02277,
author = {Jason Yim and
Brian L. Trippe and
Valentin De Bortoli and
Emile Mathieu and
Arnaud Doucet and
Regina Barzilay and
Tommi S. Jaakkola},
title = {{SE(3)} diffusion model with application to protein backbone generation},
journal = {CoRR},
volume = {abs/2302.02277},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2302.02277},
doi = {10.48550/ARXIV.2302.02277},
eprinttype = {arXiv},
eprint = {2302.02277},
timestamp = {Fri, 10 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2302-02277.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2302-04265,
author = {Yilun Xu and
Ziming Liu and
Yonglong Tian and
Shangyuan Tong and
Max Tegmark and
Tommi S. Jaakkola},
title = {{PFGM++:} Unlocking the Potential of Physics-Inspired Generative Models},
journal = {CoRR},
volume = {abs/2302.04265},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2302.04265},
doi = {10.48550/ARXIV.2302.04265},
eprinttype = {arXiv},
eprint = {2302.04265},
timestamp = {Fri, 10 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2302-04265.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-00047,
author = {Homa Esfahanizadeh and
Adam Yala and
Rafael G. L. D'Oliveira and
Andrea J. D. Jaba and
Victor Quach and
Ken R. Duffy and
Tommi S. Jaakkola and
Vinod Vaikuntanathan and
Manya Ghobadi and
Regina Barzilay and
Muriel M{\'{e}}dard},
title = {{PEOPL:} Characterizing Privately Encoded Open Datasets with Public
Labels},
journal = {CoRR},
volume = {abs/2304.00047},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.00047},
doi = {10.48550/ARXIV.2304.00047},
eprinttype = {arXiv},
eprint = {2304.00047},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-00047.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-02198,
author = {Bowen Jing and
Ezra Erives and
Peter Pao{-}Huang and
Gabriele Corso and
Bonnie Berger and
Tommi S. Jaakkola},
title = {EigenFold: Generative Protein Structure Prediction with Diffusion
Models},
journal = {CoRR},
volume = {abs/2304.02198},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.02198},
doi = {10.48550/ARXIV.2304.02198},
eprinttype = {arXiv},
eprint = {2304.02198},
timestamp = {Thu, 20 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-02198.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-02637,
author = {Ziming Liu and
Di Luo and
Yilun Xu and
Tommi S. Jaakkola and
Max Tegmark},
title = {GenPhys: From Physical Processes to Generative Models},
journal = {CoRR},
volume = {abs/2304.02637},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.02637},
doi = {10.48550/ARXIV.2304.02637},
eprinttype = {arXiv},
eprint = {2304.02637},
timestamp = {Tue, 18 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-02637.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-03322,
author = {Guanhua Zhang and
Jiabao Ji and
Yang Zhang and
Mo Yu and
Tommi S. Jaakkola and
Shiyu Chang},
title = {Towards Coherent Image Inpainting Using Denoising Diffusion Implicit
Models},
journal = {CoRR},
volume = {abs/2304.03322},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.03322},
doi = {10.48550/ARXIV.2304.03322},
eprinttype = {arXiv},
eprint = {2304.03322},
timestamp = {Tue, 18 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-03322.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-03889,
author = {Mohamed Amine Ketata and
Cedrik Laue and
Ruslan Mammadov and
Hannes St{\"{a}}rk and
Menghua Wu and
Gabriele Corso and
C{\'{e}}line Marquet and
Regina Barzilay and
Tommi S. Jaakkola},
title = {DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models},
journal = {CoRR},
volume = {abs/2304.03889},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.03889},
doi = {10.48550/ARXIV.2304.03889},
eprinttype = {arXiv},
eprint = {2304.03889},
timestamp = {Thu, 20 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-03889.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2306-10193,
author = {Victor Quach and
Adam Fisch and
Tal Schuster and
Adam Yala and
Jae Ho Sohn and
Tommi S. Jaakkola and
Regina Barzilay},
title = {Conformal Language Modeling},
journal = {CoRR},
volume = {abs/2306.10193},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2306.10193},
doi = {10.48550/ARXIV.2306.10193},
eprinttype = {arXiv},
eprint = {2306.10193},
timestamp = {Thu, 22 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2306-10193.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2306-14878,
author = {Yilun Xu and
Mingyang Deng and
Xiang Cheng and
Yonglong Tian and
Ziming Liu and
Tommi S. Jaakkola},
title = {Restart Sampling for Improving Generative Processes},
journal = {CoRR},
volume = {abs/2306.14878},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2306.14878},
doi = {10.48550/ARXIV.2306.14878},
eprinttype = {arXiv},
eprint = {2306.14878},
timestamp = {Tue, 27 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2306-14878.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-00494,
author = {Andrew Kirjner and
Jason Yim and
Raman Samusevich and
Tommi S. Jaakkola and
Regina Barzilay and
Ila Fiete},
title = {Optimizing protein fitness using Gibbs sampling with Graph-based Smoothing},
journal = {CoRR},
volume = {abs/2307.00494},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2307.00494},
doi = {10.48550/ARXIV.2307.00494},
eprinttype = {arXiv},
eprint = {2307.00494},
timestamp = {Mon, 10 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2307-00494.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-08423,
author = {Xuan Zhang and
Limei Wang and
Jacob Helwig and
Youzhi Luo and
Cong Fu and
Yaochen Xie and
Meng Liu and
Yuchao Lin and
Zhao Xu and
Keqiang Yan and
Keir Adams and
Maurice Weiler and
Xiner Li and
Tianfan Fu and
Yucheng Wang and
Haiyang Yu and
Yuqing Xie and
Xiang Fu and
Alex Strasser and
Shenglong Xu and
Yi Liu and
Yuanqi Du and
Alexandra Saxton and
Hongyi Ling and
Hannah Lawrence and
Hannes St{\"{a}}rk and
Shurui Gui and
Carl Edwards and
Nicholas Gao and
Adriana Ladera and
Tailin Wu and
Elyssa F. Hofgard and
Aria Mansouri Tehrani and
Rui Wang and
Ameya Daigavane and
Montgomery Bohde and
Jerry Kurtin and
Qian Huang and
Tuong Phung and
Minkai Xu and
Chaitanya K. Joshi and
Simon V. Mathis and
Kamyar Azizzadenesheli and
Ada Fang and
Al{\'{a}}n Aspuru{-}Guzik and
Erik J. Bekkers and
Michael M. Bronstein and
Marinka Zitnik and
Anima Anandkumar and
Stefano Ermon and
Pietro Li{\`{o}} and
Rose Yu and
Stephan G{\"{u}}nnemann and
Jure Leskovec and
Heng Ji and
Jimeng Sun and
Regina Barzilay and
Tommi S. Jaakkola and
Connor W. Coley and
Xiaoning Qian and
Xiaofeng Qian and
Tess E. Smidt and
Shuiwang Ji},
title = {Artificial Intelligence for Science in Quantum, Atomistic, and Continuum
Systems},
journal = {CoRR},
volume = {abs/2307.08423},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2307.08423},
doi = {10.48550/ARXIV.2307.08423},
eprinttype = {arXiv},
eprint = {2307.08423},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2307-08423.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-08587,
author = {Anurag Ajay and
Seungwook Han and
Yilun Du and
Shuang Li and
Abhi Gupta and
Tommi S. Jaakkola and
Josh Tenenbaum and
Leslie Pack Kaelbling and
Akash Srivastava and
Pulkit Agrawal},
title = {Compositional Foundation Models for Hierarchical Planning},
journal = {CoRR},
volume = {abs/2309.08587},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2309.08587},
doi = {10.48550/ARXIV.2309.08587},
eprinttype = {arXiv},
eprint = {2309.08587},
timestamp = {Fri, 22 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2309-08587.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-16115,
author = {Timur Garipov and
Sebastiaan De Peuter and
Ge Yang and
Vikas K. Garg and
Samuel Kaski and
Tommi S. Jaakkola},
title = {Compositional Sculpting of Iterative Generative Processes},
journal = {CoRR},
volume = {abs/2309.16115},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2309.16115},
doi = {10.48550/ARXIV.2309.16115},
eprinttype = {arXiv},
eprint = {2309.16115},
timestamp = {Wed, 18 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2309-16115.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-05764,
author = {Hannes St{\"{a}}rk and
Bowen Jing and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and
Binding Site Design},
journal = {CoRR},
volume = {abs/2310.05764},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.05764},
doi = {10.48550/ARXIV.2310.05764},
eprinttype = {arXiv},
eprint = {2310.05764},
timestamp = {Tue, 24 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-05764.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-10732,
author = {Xiang Fu and
Tian Xie and
Andrew S. Rosen and
Tommi S. Jaakkola and
Jake Smith},
title = {MOFDiff: Coarse-grained Diffusion for Metal-Organic Framework Design},
journal = {CoRR},
volume = {abs/2310.10732},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.10732},
doi = {10.48550/ARXIV.2310.10732},
eprinttype = {arXiv},
eprint = {2310.10732},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-10732.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-13102,
author = {Gabriele Corso and
Yilun Xu and
Valentin De Bortoli and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Particle Guidance: non-I.I.D. Diverse Sampling with Diffusion Models},
journal = {CoRR},
volume = {abs/2310.13102},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.13102},
doi = {10.48550/ARXIV.2310.13102},
eprinttype = {arXiv},
eprint = {2310.13102},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-13102.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-13756,
author = {Xiang Fu and
Albert Musaelian and
Anders Johansson and
Tommi S. Jaakkola and
Boris Kozinsky},
title = {Learning Interatomic Potentials at Multiple Scales},
journal = {CoRR},
volume = {abs/2310.13756},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.13756},
doi = {10.48550/ARXIV.2310.13756},
eprinttype = {arXiv},
eprint = {2310.13756},
timestamp = {Thu, 30 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-13756.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-00718,
author = {Chenyu Wang and
Sharut Gupta and
Caroline Uhler and
Tommi S. Jaakkola},
title = {Removing Biases from Molecular Representations via Information Maximization},
journal = {CoRR},
volume = {abs/2312.00718},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.00718},
doi = {10.48550/ARXIV.2312.00718},
eprinttype = {arXiv},
eprint = {2312.00718},
timestamp = {Fri, 08 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-00718.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-01692,
author = {Bracha Laufer{-}Goldshtein and
Adam Fisch and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Risk-Controlling Model Selection via Guided Bayesian Optimization},
journal = {CoRR},
volume = {abs/2312.01692},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.01692},
doi = {10.48550/ARXIV.2312.01692},
eprinttype = {arXiv},
eprint = {2312.01692},
timestamp = {Tue, 12 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-01692.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-04323,
author = {Bowen Jing and
Tommi S. Jaakkola and
Bonnie Berger},
title = {Equivariant Scalar Fields for Molecular Docking with Fast Fourier
Transforms},
journal = {CoRR},
volume = {abs/2312.04323},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.04323},
doi = {10.48550/ARXIV.2312.04323},
eprinttype = {arXiv},
eprint = {2312.04323},
timestamp = {Tue, 02 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-04323.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-06038,
author = {Yujian Liu and
Yang Zhang and
Tommi S. Jaakkola and
Shiyu Chang},
title = {Correcting Diffusion Generation through Resampling},
journal = {CoRR},
volume = {abs/2312.06038},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.06038},
doi = {10.48550/ARXIV.2312.06038},
eprinttype = {arXiv},
eprint = {2312.06038},
timestamp = {Wed, 03 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-06038.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jmlr/00020AJGR22,
author = {Han Zhao and
Chen Dan and
Bryon Aragam and
Tommi S. Jaakkola and
Geoffrey J. Gordon and
Pradeep Ravikumar},
title = {Fundamental Limits and Tradeoffs in Invariant Representation Learning},
journal = {J. Mach. Learn. Res.},
volume = {23},
pages = {340:1--340:49},
year = {2022},
url = {http://jmlr.org/papers/v23/21-1078.html},
timestamp = {Wed, 07 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/00020AJGR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmlr/FischJB22,
author = {Adam Fisch and
Tommi S. Jaakkola and
Regina Barzilay},
title = {Calibrated Selective Classification},
journal = {Trans. Mach. Learn. Res.},
volume = {2022},
year = {2022},
url = {https://openreview.net/forum?id=zFhNBs8GaV},
timestamp = {Fri, 19 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmlr/FischJB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccv/JingCBJ22,
author = {Bowen Jing and
Gabriele Corso and
Renato Berlinghieri and
Tommi S. Jaakkola},
editor = {Shai Avidan and
Gabriel J. Brostow and
Moustapha Ciss{\'{e}} and
Giovanni Maria Farinella and
Tal Hassner},
title = {Subspace Diffusion Generative Models},
booktitle = {Computer Vision - {ECCV} 2022 - 17th European Conference, Tel Aviv,
Israel, October 23-27, 2022, Proceedings, Part {XXIII}},
series = {Lecture Notes in Computer Science},
volume = {13683},
pages = {274--289},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-20050-2\_17},
doi = {10.1007/978-3-031-20050-2\_17},
timestamp = {Fri, 06 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccv/JingCBJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/GaneaHBBBJ022,
author = {Octavian{-}Eugen Ganea and
Xinyuan Huang and
Charlotte Bunne and
Yatao Bian and
Regina Barzilay and
Tommi S. Jaakkola and
Andreas Krause},
title = {Independent SE(3)-Equivariant Models for End-to-End Rigid Protein
Docking},
booktitle = {The Tenth International Conference on Learning Representations, {ICLR}
2022, Virtual Event, April 25-29, 2022},
publisher = {OpenReview.net},
year = {2022},
url = {https://openreview.net/forum?id=GQjaI9mLet},
timestamp = {Sat, 20 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/GaneaHBBBJ022.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/JinWBJ22,
author = {Wengong Jin and
Jeremy Wohlwend and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Iterative Refinement Graph Neural Network for Antibody Sequence-Structure
Co-design},
booktitle = {The Tenth International Conference on Learning Representations, {ICLR}
2022, Virtual Event, April 25-29, 2022},
publisher = {OpenReview.net},
year = {2022},
url = {https://openreview.net/forum?id=LI2bhrE\_2A},
timestamp = {Sat, 20 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/JinWBJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/TongGZCJ22,
author = {Shangyuan Tong and
Timur Garipov and
Yang Zhang and
Shiyu Chang and
Tommi S. Jaakkola},
title = {Adversarial Support Alignment},
booktitle = {The Tenth International Conference on Learning Representations, {ICLR}
2022, Virtual Event, April 25-29, 2022},
publisher = {OpenReview.net},
year = {2022},
url = {https://openreview.net/forum?id=26gKg6x-ie},
timestamp = {Tue, 11 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/TongGZCJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/XieFGBJ22,
author = {Tian Xie and
Xiang Fu and
Octavian{-}Eugen Ganea and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Crystal Diffusion Variational Autoencoder for Periodic Material Generation},
booktitle = {The Tenth International Conference on Learning Representations, {ICLR}
2022, Virtual Event, April 25-29, 2022},
publisher = {OpenReview.net},
year = {2022},
url = {https://openreview.net/forum?id=03RLpj-tc\_},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/XieFGBJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/XuHSJ22,
author = {Yilun Xu and
Hao He and
Tianxiao Shen and
Tommi S. Jaakkola},
title = {Controlling Directions Orthogonal to a Classifier},
booktitle = {The Tenth International Conference on Learning Representations, {ICLR}
2022, Virtual Event, April 25-29, 2022},
publisher = {OpenReview.net},
year = {2022},
url = {https://openreview.net/forum?id=DIjCrlsu6Z},
timestamp = {Sat, 20 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/XuHSJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/FischSJB22,
author = {Adam Fisch and
Tal Schuster and
Tommi S. Jaakkola and
Regina Barzilay},
editor = {Kamalika Chaudhuri and
Stefanie Jegelka and
Le Song and
Csaba Szepesv{\'{a}}ri and
Gang Niu and
Sivan Sabato},
title = {Conformal Prediction Sets with Limited False Positives},
booktitle = {International Conference on Machine Learning, {ICML} 2022, 17-23 July
2022, Baltimore, Maryland, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {162},
pages = {6514--6532},
publisher = {{PMLR}},
year = {2022},
url = {https://proceedings.mlr.press/v162/fisch22a.html},
timestamp = {Fri, 06 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icml/FischSJB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/JinBJ22,
author = {Wengong Jin and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Kamalika Chaudhuri and
Stefanie Jegelka and
Le Song and
Csaba Szepesv{\'{a}}ri and
Gang Niu and
Sivan Sabato},
title = {Antibody-Antigen Docking and Design via Hierarchical Structure Refinement},
booktitle = {International Conference on Machine Learning, {ICML} 2022, 17-23 July
2022, Baltimore, Maryland, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {162},
pages = {10217--10227},
publisher = {{PMLR}},
year = {2022},
url = {https://proceedings.mlr.press/v162/jin22a.html},
timestamp = {Fri, 06 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icml/JinBJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/StarkGPBJ22,
author = {Hannes St{\"{a}}rk and
Octavian Ganea and
Lagnajit Pattanaik and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Kamalika Chaudhuri and
Stefanie Jegelka and
Le Song and
Csaba Szepesv{\'{a}}ri and
Gang Niu and
Sivan Sabato},
title = {EquiBind: Geometric Deep Learning for Drug Binding Structure Prediction},
booktitle = {International Conference on Machine Learning, {ICML} 2022, 17-23 July
2022, Baltimore, Maryland, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {162},
pages = {20503--20521},
publisher = {{PMLR}},
year = {2022},
url = {https://proceedings.mlr.press/v162/stark22b.html},
timestamp = {Fri, 06 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icml/StarkGPBJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/JingCCBJ22,
author = {Bowen Jing and
Gabriele Corso and
Jeffrey Chang and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Sanmi Koyejo and
S. Mohamed and
A. Agarwal and
Danielle Belgrave and
K. Cho and
A. Oh},
title = {Torsional Diffusion for Molecular Conformer Generation},
booktitle = {Advances in Neural Information Processing Systems 35: Annual Conference
on Neural Information Processing Systems 2022, NeurIPS 2022, New Orleans,
LA, USA, November 28 - December 9, 2022},
year = {2022},
url = {http://papers.nips.cc/paper\_files/paper/2022/hash/994545b2308bbbbc97e3e687ea9e464f-Abstract-Conference.html},
timestamp = {Mon, 08 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/JingCCBJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/XuLTJ22,
author = {Yilun Xu and
Ziming Liu and
Max Tegmark and
Tommi S. Jaakkola},
editor = {Sanmi Koyejo and
S. Mohamed and
A. Agarwal and
Danielle Belgrave and
K. Cho and
A. Oh},
title = {Poisson Flow Generative Models},
booktitle = {Advances in Neural Information Processing Systems 35: Annual Conference
on Neural Information Processing Systems 2022, NeurIPS 2022, New Orleans,
LA, USA, November 28 - December 9, 2022},
year = {2022},
url = {http://papers.nips.cc/paper\_files/paper/2022/hash/6ad68a54eaa8f9bf6ac698b02ec05048-Abstract-Conference.html},
timestamp = {Mon, 08 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/XuLTJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-11259,
author = {Yilun Xu and
Hao He and
Tianxiao Shen and
Tommi S. Jaakkola},
title = {Controlling Directions Orthogonal to a Classifier},
journal = {CoRR},
volume = {abs/2201.11259},
year = {2022},
url = {https://arxiv.org/abs/2201.11259},
eprinttype = {arXiv},
eprint = {2201.11259},
timestamp = {Tue, 05 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2201-11259.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-12406,
author = {Adam Yala and
Victor Quach and
Homa Esfahanizadeh and
Rafael G. L. D'Oliveira and
Ken R. Duffy and
Muriel M{\'{e}}dard and
Tommi S. Jaakkola and
Regina Barzilay},
title = {Syfer: Neural Obfuscation for Private Data Release},
journal = {CoRR},
volume = {abs/2201.12406},
year = {2022},
url = {https://arxiv.org/abs/2201.12406},
eprinttype = {arXiv},
eprint = {2201.12406},
timestamp = {Wed, 02 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2201-12406.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2202-05146,
author = {Hannes St{\"{a}}rk and
Octavian{-}Eugen Ganea and
Lagnajit Pattanaik and
Regina Barzilay and
Tommi S. Jaakkola},
title = {EquiBind: Geometric Deep Learning for Drug Binding Structure Prediction},
journal = {CoRR},
volume = {abs/2202.05146},
year = {2022},
url = {https://arxiv.org/abs/2202.05146},
eprinttype = {arXiv},
eprint = {2202.05146},
timestamp = {Tue, 05 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2202-05146.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2202-07650,
author = {Adam Fisch and
Tal Schuster and
Tommi S. Jaakkola and
Regina Barzilay},
title = {Conformal Prediction Sets with Limited False Positives},
journal = {CoRR},
volume = {abs/2202.07650},
year = {2022},
url = {https://arxiv.org/abs/2202.07650},
eprinttype = {arXiv},
eprint = {2202.07650},
timestamp = {Tue, 05 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2202-07650.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2203-08908,
author = {Shangyuan Tong and
Timur Garipov and
Yang Zhang and
Shiyu Chang and
Tommi S. Jaakkola},
title = {Adversarial Support Alignment},
journal = {CoRR},
volume = {abs/2203.08908},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2203.08908},
doi = {10.48550/ARXIV.2203.08908},
eprinttype = {arXiv},
eprint = {2203.08908},
timestamp = {Tue, 09 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2203-08908.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2204-10348,
author = {Xiang Fu and
Tian Xie and
Nathan J. Rebello and
Bradley D. Olsen and
Tommi S. Jaakkola},
title = {Simulate Time-integrated Coarse-grained Molecular Dynamics with Geometric
Machine Learning},
journal = {CoRR},
volume = {abs/2204.10348},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2204.10348},
doi = {10.48550/ARXIV.2204.10348},
eprinttype = {arXiv},
eprint = {2204.10348},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2204-10348.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2205-01490,
author = {Bowen Jing and
Gabriele Corso and
Renato Berlinghieri and
Tommi S. Jaakkola},
title = {Subspace Diffusion Generative Models},
journal = {CoRR},
volume = {abs/2205.01490},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2205.01490},
doi = {10.48550/ARXIV.2205.01490},
eprinttype = {arXiv},
eprint = {2205.01490},
timestamp = {Thu, 05 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2205-01490.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-01729,
author = {Bowen Jing and
Gabriele Corso and
Jeffrey Chang and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Torsional Diffusion for Molecular Conformer Generation},
journal = {CoRR},
volume = {abs/2206.01729},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2206.01729},
doi = {10.48550/ARXIV.2206.01729},
eprinttype = {arXiv},
eprint = {2206.01729},
timestamp = {Wed, 15 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2206-01729.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-04119,
author = {Brian L. Trippe and
Jason Yim and
Doug Tischer and
David Baker and
Tamara Broderick and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Diffusion probabilistic modeling of protein backbones in 3D for the
motif-scaffolding problem},
journal = {CoRR},
volume = {abs/2206.04119},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2206.04119},
doi = {10.48550/ARXIV.2206.04119},
eprinttype = {arXiv},
eprint = {2206.04119},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2206-04119.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-06616,
author = {Wengong Jin and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Antibody-Antigen Docking and Design via Hierarchical Equivariant Refinement},
journal = {CoRR},
volume = {abs/2207.06616},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2207.06616},
doi = {10.48550/ARXIV.2207.06616},
eprinttype = {arXiv},
eprint = {2207.06616},
timestamp = {Fri, 06 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2207-06616.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2208-12084,
author = {Adam Fisch and
Tommi S. Jaakkola and
Regina Barzilay},
title = {Calibrated Selective Classification},
journal = {CoRR},
volume = {abs/2208.12084},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2208.12084},
doi = {10.48550/ARXIV.2208.12084},
eprinttype = {arXiv},
eprint = {2208.12084},
timestamp = {Fri, 06 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2208-12084.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2209-11178,
author = {Yilun Xu and
Ziming Liu and
Max Tegmark and
Tommi S. Jaakkola},
title = {Poisson Flow Generative Models},
journal = {CoRR},
volume = {abs/2209.11178},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2209.11178},
doi = {10.48550/ARXIV.2209.11178},
eprinttype = {arXiv},
eprint = {2209.11178},
timestamp = {Wed, 28 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2209-11178.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2210-01776,
author = {Gabriele Corso and
Hannes St{\"{a}}rk and
Bowen Jing and
Regina Barzilay and
Tommi S. Jaakkola},
title = {DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking},
journal = {CoRR},
volume = {abs/2210.01776},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2210.01776},
doi = {10.48550/ARXIV.2210.01776},
eprinttype = {arXiv},
eprint = {2210.01776},
timestamp = {Fri, 06 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2210-01776.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2210-07237,
author = {Xiang Fu and
Zhenghao Wu and
Wujie Wang and
Tian Xie and
Sinan Keten and
Rafael G{\'{o}}mez{-}Bombarelli and
Tommi S. Jaakkola},
title = {Forces are not Enough: Benchmark and Critical Evaluation for Machine
Learning Force Fields with Molecular Simulations},
journal = {CoRR},
volume = {abs/2210.07237},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2210.07237},
doi = {10.48550/ARXIV.2210.07237},
eprinttype = {arXiv},
eprint = {2210.07237},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2210-07237.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2210-07913,
author = {Bracha Laufer{-}Goldshtein and
Adam Fisch and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Efficiently Controlling Multiple Risks with Pareto Testing},
journal = {CoRR},
volume = {abs/2210.07913},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2210.07913},
doi = {10.48550/ARXIV.2210.07913},
eprinttype = {arXiv},
eprint = {2210.07913},
timestamp = {Fri, 06 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2210-07913.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-15657,
author = {Anurag Ajay and
Yilun Du and
Abhi Gupta and
Joshua B. Tenenbaum and
Tommi S. Jaakkola and
Pulkit Agrawal},
title = {Is Conditional Generative Modeling all you need for Decision-Making?},
journal = {CoRR},
volume = {abs/2211.15657},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2211.15657},
doi = {10.48550/ARXIV.2211.15657},
eprinttype = {arXiv},
eprint = {2211.15657},
timestamp = {Tue, 29 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2211-15657.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pnas/JinSEIZCJB21,
author = {Wengong Jin and
Jonathan M. Stokes and
Richard T. Eastman and
Zina Itkin and
Alexey V. Zakharov and
James J. Collins and
Tommi S. Jaakkola and
Regina Barzilay},
title = {Deep learning identifies synergistic drug combinations for treating
{COVID-19}},
journal = {Proc. Natl. Acad. Sci. {USA}},
volume = {118},
number = {39},
pages = {e2105070118},
year = {2021},
url = {https://doi.org/10.1073/pnas.2105070118},
doi = {10.1073/PNAS.2105070118},
timestamp = {Fri, 13 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pnas/JinSEIZCJB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/YangGJLBJU21,
author = {Karren D. Yang and
Samuel Goldman and
Wengong Jin and
Alex X. Lu and
Regina Barzilay and
Tommi S. Jaakkola and
Caroline Uhler},
title = {Mol2Image: Improved Conditional Flow Models for Molecule to Image
Synthesis},
booktitle = {{IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR}
2021, virtual, June 19-25, 2021},
pages = {6688--6698},
publisher = {Computer Vision Foundation / {IEEE}},
year = {2021},
url = {https://openaccess.thecvf.com/content/CVPR2021/html/Yang\_Mol2Image\_Improved\_Conditional\_Flow\_Models\_for\_Molecule\_to\_Image\_Synthesis\_CVPR\_2021\_paper.html},
doi = {10.1109/CVPR46437.2021.00662},
timestamp = {Mon, 18 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cvpr/YangGJLBJU21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/SchusterFJB21,
author = {Tal Schuster and
Adam Fisch and
Tommi S. Jaakkola and
Regina Barzilay},
editor = {Marie{-}Francine Moens and
Xuanjing Huang and
Lucia Specia and
Scott Wen{-}tau Yih},
title = {Consistent Accelerated Inference via Confident Adaptive Transformers},
booktitle = {Proceedings of the 2021 Conference on Empirical Methods in Natural
Language Processing, {EMNLP} 2021, Virtual Event / Punta Cana, Dominican
Republic, 7-11 November, 2021},
pages = {4962--4979},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.emnlp-main.406},
doi = {10.18653/V1/2021.EMNLP-MAIN.406},
timestamp = {Fri, 16 Feb 2024 08:27:36 +0100},
biburl = {https://dblp.org/rec/conf/emnlp/SchusterFJB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/FischSJB21,
author = {Adam Fisch and
Tal Schuster and
Tommi S. Jaakkola and
Regina Barzilay},
title = {Efficient Conformal Prediction via Cascaded Inference with Expanded
Admission},
booktitle = {9th International Conference on Learning Representations, {ICLR} 2021,
Virtual Event, Austria, May 3-7, 2021},
publisher = {OpenReview.net},
year = {2021},
url = {https://openreview.net/forum?id=tnSo6VRLmT},
timestamp = {Wed, 23 Jun 2021 17:36:39 +0200},
biburl = {https://dblp.org/rec/conf/iclr/FischSJB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/FischSJB21,
author = {Adam Fisch and
Tal Schuster and
Tommi S. Jaakkola and
Regina Barzilay},
editor = {Marina Meila and
Tong Zhang},
title = {Few-Shot Conformal Prediction with Auxiliary Tasks},
booktitle = {Proceedings of the 38th International Conference on Machine Learning,
{ICML} 2021, 18-24 July 2021, Virtual Event},
series = {Proceedings of Machine Learning Research},
volume = {139},
pages = {3329--3339},
publisher = {{PMLR}},
year = {2021},
url = {http://proceedings.mlr.press/v139/fisch21a.html},
timestamp = {Wed, 25 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/FischSJB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/FuYAJ21,
author = {Xiang Fu and
Ge Yang and
Pulkit Agrawal and
Tommi S. Jaakkola},
editor = {Marina Meila and
Tong Zhang},
title = {Learning Task Informed Abstractions},
booktitle = {Proceedings of the 38th International Conference on Machine Learning,
{ICML} 2021, 18-24 July 2021, Virtual Event},
series = {Proceedings of Machine Learning Research},
volume = {139},
pages = {3480--3491},
publisher = {{PMLR}},
year = {2021},
url = {http://proceedings.mlr.press/v139/fu21b.html},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/FuYAJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/Liao0XJGJS21,
author = {Peiyuan Liao and
Han Zhao and
Keyulu Xu and
Tommi S. Jaakkola and
Geoffrey J. Gordon and
Stefanie Jegelka and
Ruslan Salakhutdinov},
editor = {Marina Meila and
Tong Zhang},
title = {Information Obfuscation of Graph Neural Networks},
booktitle = {Proceedings of the 38th International Conference on Machine Learning,
{ICML} 2021, 18-24 July 2021, Virtual Event},
series = {Proceedings of Machine Learning Research},
volume = {139},
pages = {6600--6610},
publisher = {{PMLR}},
year = {2021},
url = {http://proceedings.mlr.press/v139/liao21a.html},
timestamp = {Wed, 25 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/Liao0XJGJS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/YuZCJ21,
author = {Mo Yu and
Yang Zhang and
Shiyu Chang and
Tommi S. Jaakkola},
editor = {Marc'Aurelio Ranzato and
Alina Beygelzimer and
Yann N. Dauphin and
Percy Liang and
Jennifer Wortman Vaughan},
title = {Understanding Interlocking Dynamics of Cooperative Rationalization},
booktitle = {Advances in Neural Information Processing Systems 34: Annual Conference
on Neural Information Processing Systems 2021, NeurIPS 2021, December
6-14, 2021, virtual},
pages = {12822--12835},
year = {2021},
url = {https://proceedings.neurips.cc/paper/2021/hash/6a711a119a8a7a9f877b5f379bfe9ea2-Abstract.html},
timestamp = {Tue, 03 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nips/YuZCJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/GaneaPCBJGJ21,
author = {Octavian Ganea and
Lagnajit Pattanaik and
Connor W. Coley and
Regina Barzilay and
Klavs F. Jensen and
William H. Green Jr. and
Tommi S. Jaakkola},
editor = {Marc'Aurelio Ranzato and
Alina Beygelzimer and
Yann N. Dauphin and
Percy Liang and
Jennifer Wortman Vaughan},
title = {GeoMol: Torsional Geometric Generation of Molecular 3D Conformer Ensembles},
booktitle = {Advances in Neural Information Processing Systems 34: Annual Conference
on Neural Information Processing Systems 2021, NeurIPS 2021, December
6-14, 2021, virtual},
pages = {13757--13769},
year = {2021},
url = {https://proceedings.neurips.cc/paper/2021/hash/725215ed82ab6306919b485b81ff9615-Abstract.html},
timestamp = {Tue, 03 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nips/GaneaPCBJGJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2102-08898,
author = {Adam Fisch and
Tal Schuster and
Tommi S. Jaakkola and
Regina Barzilay},
title = {Few-shot Conformal Prediction with Auxiliary Tasks},
journal = {CoRR},
volume = {abs/2102.08898},
year = {2021},
url = {https://arxiv.org/abs/2102.08898},
eprinttype = {arXiv},
eprint = {2102.08898},
timestamp = {Fri, 19 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2102-08898.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2104-08803,
author = {Tal Schuster and
Adam Fisch and
Tommi S. Jaakkola and
Regina Barzilay},
title = {Consistent Accelerated Inference via Confident Adaptive Transformers},
journal = {CoRR},
volume = {abs/2104.08803},
year = {2021},
url = {https://arxiv.org/abs/2104.08803},
eprinttype = {arXiv},
eprint = {2104.08803},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2104-08803.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-02484,
author = {Adam Yala and
Homa Esfahanizadeh and
Rafael G. L. D'Oliveira and
Ken R. Duffy and
Manya Ghobadi and
Tommi S. Jaakkola and
Vinod Vaikuntanathan and
Regina Barzilay and
Muriel M{\'{e}}dard},
title = {NeuraCrypt: Hiding Private Health Data via Random Neural Networks
for Public Training},
journal = {CoRR},
volume = {abs/2106.02484},
year = {2021},
url = {https://arxiv.org/abs/2106.02484},
eprinttype = {arXiv},
eprint = {2106.02484},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-02484.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-07802,
author = {Octavian{-}Eugen Ganea and
Lagnajit Pattanaik and
Connor W. Coley and
Regina Barzilay and
Klavs F. Jensen and
William H. Green Jr. and
Tommi S. Jaakkola},
title = {GeoMol: Torsional Geometric Generation of Molecular 3D Conformer Ensembles},
journal = {CoRR},
volume = {abs/2106.07802},
year = {2021},
url = {https://arxiv.org/abs/2106.07802},
eprinttype = {arXiv},
eprint = {2106.07802},
timestamp = {Thu, 01 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-07802.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-15612,
author = {Xiang Fu and
Ge Yang and
Pulkit Agrawal and
Tommi S. Jaakkola},
title = {Learning Task Informed Abstractions},
journal = {CoRR},
volume = {abs/2106.15612},
year = {2021},
url = {https://arxiv.org/abs/2106.15612},
eprinttype = {arXiv},
eprint = {2106.15612},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-15612.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2110-04624,
author = {Wengong Jin and
Jeremy Wohlwend and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Iterative Refinement Graph Neural Network for Antibody Sequence-Structure
Co-design},
journal = {CoRR},
volume = {abs/2110.04624},
year = {2021},
url = {https://arxiv.org/abs/2110.04624},
eprinttype = {arXiv},
eprint = {2110.04624},
timestamp = {Mon, 25 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2110-04624.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2110-06197,
author = {Tian Xie and
Xiang Fu and
Octavian{-}Eugen Ganea and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Crystal Diffusion Variational Autoencoder for Periodic Material Generation},
journal = {CoRR},
volume = {abs/2110.06197},
year = {2021},
url = {https://arxiv.org/abs/2110.06197},
eprinttype = {arXiv},
eprint = {2110.06197},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2110-06197.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2110-09940,
author = {Yilun Xu and
Tommi S. Jaakkola},
title = {Learning Representations that Support Robust Transfer of Predictors},
journal = {CoRR},
volume = {abs/2110.09940},
year = {2021},
url = {https://arxiv.org/abs/2110.09940},
eprinttype = {arXiv},
eprint = {2110.09940},
timestamp = {Tue, 05 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2110-09940.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2110-13880,
author = {Mo Yu and
Yang Zhang and
Shiyu Chang and
Tommi S. Jaakkola},
title = {Understanding Interlocking Dynamics of Cooperative Rationalization},
journal = {CoRR},
volume = {abs/2110.13880},
year = {2021},
url = {https://arxiv.org/abs/2110.13880},
eprinttype = {arXiv},
eprint = {2110.13880},
timestamp = {Tue, 09 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2110-13880.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2111-01009,
author = {Benson Chen and
Xiang Fu and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Fragment-based Sequential Translation for Molecular Optimization},
journal = {CoRR},
volume = {abs/2111.01009},
year = {2021},
url = {https://arxiv.org/abs/2111.01009},
eprinttype = {arXiv},
eprint = {2111.01009},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2111-01009.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2111-07786,
author = {Octavian{-}Eugen Ganea and
Xinyuan Huang and
Charlotte Bunne and
Yatao Bian and
Regina Barzilay and
Tommi S. Jaakkola and
Andreas Krause},
title = {Independent SE(3)-Equivariant Models for End-to-End Rigid Protein
Docking},
journal = {CoRR},
volume = {abs/2111.07786},
year = {2021},
url = {https://arxiv.org/abs/2111.07786},
eprinttype = {arXiv},
eprint = {2111.07786},
timestamp = {Tue, 05 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2111-07786.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/Alvarez-MelisMJ20,
author = {David Alvarez{-}Melis and
Youssef Mroueh and
Tommi S. Jaakkola},
editor = {Silvia Chiappa and
Roberto Calandra},
title = {Unsupervised Hierarchy Matching with Optimal Transport over Hyperbolic
Spaces},
booktitle = {The 23rd International Conference on Artificial Intelligence and Statistics,
{AISTATS} 2020, 26-28 August 2020, Online [Palermo, Sicily, Italy]},
series = {Proceedings of Machine Learning Research},
volume = {108},
pages = {1606--1617},
publisher = {{PMLR}},
year = {2020},
url = {http://proceedings.mlr.press/v108/alvarez-melis20a.html},
timestamp = {Mon, 29 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aistats/Alvarez-MelisMJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/ShenQBJ20,
author = {Tianxiao Shen and
Victor Quach and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Bonnie Webber and
Trevor Cohn and
Yulan He and
Yang Liu},
title = {Blank Language Models},
booktitle = {Proceedings of the 2020 Conference on Empirical Methods in Natural
Language Processing, {EMNLP} 2020, Online, November 16-20, 2020},
pages = {5186--5198},
publisher = {Association for Computational Linguistics},
year = {2020},
url = {https://doi.org/10.18653/v1/2020.emnlp-main.420},
doi = {10.18653/V1/2020.EMNLP-MAIN.420},
timestamp = {Wed, 23 Mar 2022 10:11:55 +0100},
biburl = {https://dblp.org/rec/conf/emnlp/ShenQBJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/0001ZLKJ20,
author = {Chen{-}Yu Hsu and
Abbas Zeitoun and
Guang{-}He Lee and
Dina Katabi and
Tommi S. Jaakkola},
title = {Self-Supervised Learning of Appliance Usage},
booktitle = {8th International Conference on Learning Representations, {ICLR} 2020,
Addis Ababa, Ethiopia, April 26-30, 2020},
publisher = {OpenReview.net},
year = {2020},
url = {https://openreview.net/forum?id=B1lJzyStvS},
timestamp = {Thu, 07 May 2020 17:11:47 +0200},
biburl = {https://dblp.org/rec/conf/iclr/0001ZLKJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/LeeJ20,
author = {Guang{-}He Lee and
Tommi S. Jaakkola},
title = {Oblique Decision Trees from Derivatives of ReLU Networks},
booktitle = {8th International Conference on Learning Representations, {ICLR} 2020,
Addis Ababa, Ethiopia, April 26-30, 2020},
publisher = {OpenReview.net},
year = {2020},
url = {https://openreview.net/forum?id=Bke8UR4FPB},
timestamp = {Thu, 07 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/LeeJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/ChangZYJ20,
author = {Shiyu Chang and
Yang Zhang and
Mo Yu and
Tommi S. Jaakkola},
title = {Invariant Rationalization},
booktitle = {Proceedings of the 37th International Conference on Machine Learning,
{ICML} 2020, 13-18 July 2020, Virtual Event},
series = {Proceedings of Machine Learning Research},
volume = {119},
pages = {1448--1458},
publisher = {{PMLR}},
year = {2020},
url = {http://proceedings.mlr.press/v119/chang20c.html},
timestamp = {Tue, 09 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/ChangZYJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/GargJ20,
author = {Vikas K. Garg and
Tommi S. Jaakkola},
title = {Predicting deliberative outcomes},
booktitle = {Proceedings of the 37th International Conference on Machine Learning,
{ICML} 2020, 13-18 July 2020, Virtual Event},
series = {Proceedings of Machine Learning Research},
volume = {119},
pages = {3408--3418},
publisher = {{PMLR}},
year = {2020},
url = {http://proceedings.mlr.press/v119/garg20b.html},
timestamp = {Tue, 15 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icml/GargJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/GargJJ20,
author = {Vikas K. Garg and
Stefanie Jegelka and
Tommi S. Jaakkola},
title = {Generalization and Representational Limits of Graph Neural Networks},
booktitle = {Proceedings of the 37th International Conference on Machine Learning,
{ICML} 2020, 13-18 July 2020, Virtual Event},
series = {Proceedings of Machine Learning Research},
volume = {119},
pages = {3419--3430},
publisher = {{PMLR}},
year = {2020},
url = {http://proceedings.mlr.press/v119/garg20c.html},
timestamp = {Tue, 15 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icml/GargJJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/JinBJ20,
author = {Wengong Jin and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Hierarchical Generation of Molecular Graphs using Structural Motifs},
booktitle = {Proceedings of the 37th International Conference on Machine Learning,
{ICML} 2020, 13-18 July 2020, Virtual Event},
series = {Proceedings of Machine Learning Research},
volume = {119},
pages = {4839--4848},
publisher = {{PMLR}},
year = {2020},
url = {http://proceedings.mlr.press/v119/jin20a.html},
timestamp = {Tue, 15 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icml/JinBJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/JinBJ20a,
author = {Wengong Jin and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Multi-Objective Molecule Generation using Interpretable Substructures},
booktitle = {Proceedings of the 37th International Conference on Machine Learning,
{ICML} 2020, 13-18 July 2020, Virtual Event},
series = {Proceedings of Machine Learning Research},
volume = {119},
pages = {4849--4859},
publisher = {{PMLR}},
year = {2020},
url = {http://proceedings.mlr.press/v119/jin20b.html},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icml/JinBJ20a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/ShenMBJ20,
author = {Tianxiao Shen and
Jonas Mueller and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Educating Text Autoencoders: Latent Representation Guidance via Denoising},
booktitle = {Proceedings of the 37th International Conference on Machine Learning,
{ICML} 2020, 13-18 July 2020, Virtual Event},
series = {Proceedings of Machine Learning Research},
volume = {119},
pages = {8719--8729},
publisher = {{PMLR}},
year = {2020},
url = {http://proceedings.mlr.press/v119/shen20c.html},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/ShenMBJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/YangJSBJ20,
author = {Kevin Yang and
Wengong Jin and
Kyle Swanson and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Improving Molecular Design by Stochastic Iterative Target Augmentation},
booktitle = {Proceedings of the 37th International Conference on Machine Learning,
{ICML} 2020, 13-18 July 2020, Virtual Event},
series = {Proceedings of Machine Learning Research},
volume = {119},
pages = {10716--10726},
publisher = {{PMLR}},
year = {2020},
url = {http://proceedings.mlr.press/v119/yang20e.html},
timestamp = {Tue, 15 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icml/YangJSBJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-03079,
author = {Tianxiao Shen and
Victor Quach and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Blank Language Models},
journal = {CoRR},
volume = {abs/2002.03079},
year = {2020},
url = {https://arxiv.org/abs/2002.03079},
eprinttype = {arXiv},
eprint = {2002.03079},
timestamp = {Wed, 12 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-03079.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-03230,
author = {Wengong Jin and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Hierarchical Generation of Molecular Graphs using Structural Motifs},
journal = {CoRR},
volume = {abs/2002.03230},
year = {2020},
url = {https://arxiv.org/abs/2002.03230},
eprinttype = {arXiv},
eprint = {2002.03230},
timestamp = {Wed, 12 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-03230.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-03244,
author = {Wengong Jin and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Composing Molecules with Multiple Property Constraints},
journal = {CoRR},
volume = {abs/2002.03244},
year = {2020},
url = {https://arxiv.org/abs/2002.03244},
eprinttype = {arXiv},
eprint = {2002.03244},
timestamp = {Thu, 13 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-03244.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-04720,
author = {Kevin Yang and
Wengong Jin and
Kyle Swanson and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Improving Molecular Design by Stochastic Iterative Target Augmentation},
journal = {CoRR},
volume = {abs/2002.04720},
year = {2020},
url = {https://arxiv.org/abs/2002.04720},
eprinttype = {arXiv},
eprint = {2002.04720},
timestamp = {Fri, 14 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-04720.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-06157,
author = {Vikas K. Garg and
Stefanie Jegelka and
Tommi S. Jaakkola},
title = {Generalization and Representational Limits of Graph Neural Networks},
journal = {CoRR},
volume = {abs/2002.06157},
year = {2020},
url = {https://arxiv.org/abs/2002.06157},
eprinttype = {arXiv},
eprint = {2002.06157},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-06157.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-08621,
author = {Shangyuan Tong and
Timur Garipov and
Tommi S. Jaakkola},
title = {The Benefits of Pairwise Discriminators for Adversarial Training},
journal = {CoRR},
volume = {abs/2002.08621},
year = {2020},
url = {https://arxiv.org/abs/2002.08621},
eprinttype = {arXiv},
eprint = {2002.08621},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-08621.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2003-09772,
author = {Shiyu Chang and
Yang Zhang and
Mo Yu and
Tommi S. Jaakkola},
title = {Invariant Rationalization},
journal = {CoRR},
volume = {abs/2003.09772},
year = {2020},
url = {https://arxiv.org/abs/2003.09772},
eprinttype = {arXiv},
eprint = {2003.09772},
timestamp = {Tue, 09 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2003-09772.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2005-03004,
author = {Wengong Jin and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Adaptive Invariance for Molecule Property Prediction},
journal = {CoRR},
volume = {abs/2005.03004},
year = {2020},
url = {https://arxiv.org/abs/2005.03004},
eprinttype = {arXiv},
eprint = {2005.03004},
timestamp = {Sun, 10 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2005-03004.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-03908,
author = {Wengong Jin and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Domain Extrapolation via Regret Minimization},
journal = {CoRR},
volume = {abs/2006.03908},
year = {2020},
url = {https://arxiv.org/abs/2006.03908},
eprinttype = {arXiv},
eprint = {2006.03908},
timestamp = {Fri, 12 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-03908.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-04804,
author = {Gary B{\'{e}}cigneul and
Octavian{-}Eugen Ganea and
Benson Chen and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Optimal Transport Graph Neural Networks},
journal = {CoRR},
volume = {abs/2006.04804},
year = {2020},
url = {https://arxiv.org/abs/2006.04804},
eprinttype = {arXiv},
eprint = {2006.04804},
timestamp = {Sat, 13 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-04804.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-08532,
author = {Karren D. Yang and
Samuel Goldman and
Wengong Jin and
Alex Lu and
Regina Barzilay and
Tommi S. Jaakkola and
Caroline Uhler},
title = {Improved Conditional Flow Models for Molecule to Image Synthesis},
journal = {CoRR},
volume = {abs/2006.08532},
year = {2020},
url = {https://arxiv.org/abs/2006.08532},
eprinttype = {arXiv},
eprint = {2006.08532},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-08532.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2007-03114,
author = {Adam Fisch and
Tal Schuster and
Tommi S. Jaakkola and
Regina Barzilay},
title = {Relaxed Conformal Prediction Cascades for Efficient Inference Over
Many Labels},
journal = {CoRR},
volume = {abs/2007.03114},
year = {2020},
url = {https://arxiv.org/abs/2007.03114},
eprinttype = {arXiv},
eprint = {2007.03114},
timestamp = {Mon, 20 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2007-03114.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2009-13504,
author = {Peiyuan Liao and
Han Zhao and
Keyulu Xu and
Tommi S. Jaakkola and
Geoffrey J. Gordon and
Stefanie Jegelka and
Ruslan Salakhutdinov},
title = {Graph Adversarial Networks: Protecting Information against Adversarial
Attacks},
journal = {CoRR},
volume = {abs/2009.13504},
year = {2020},
url = {https://arxiv.org/abs/2009.13504},
eprinttype = {arXiv},
eprint = {2009.13504},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2009-13504.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2011-04651,
author = {Wengong Jin and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Discovering Synergistic Drug Combinations for {COVID} with Biological
Bottleneck Models},
journal = {CoRR},
volume = {abs/2011.04651},
year = {2020},
url = {https://arxiv.org/abs/2011.04651},
eprinttype = {arXiv},
eprint = {2011.04651},
timestamp = {Tue, 01 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2011-04651.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2012-10713,
author = {Han Zhao and
Chen Dan and
Bryon Aragam and
Tommi S. Jaakkola and
Geoffrey J. Gordon and
Pradeep Ravikumar},
title = {Fundamental Limits and Tradeoffs in Invariant Representation Learning},
journal = {CoRR},
volume = {abs/2012.10713},
year = {2020},
url = {https://arxiv.org/abs/2012.10713},
eprinttype = {arXiv},
eprint = {2012.10713},
timestamp = {Mon, 04 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2012-10713.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/YangSJCEGGHKMPS19,
author = {Kevin Yang and
Kyle Swanson and
Wengong Jin and
Connor W. Coley and
Philipp Eiden and
Hua Gao and
Angel Guzman{-}Perez and
Timothy Hopper and
Brian Kelley and
Miriam Mathea and
Andrew Palmer and
Volker Settels and
Tommi S. Jaakkola and
Klavs F. Jensen and
Regina Barzilay},
title = {Analyzing Learned Molecular Representations for Property Prediction},
journal = {J. Chem. Inf. Model.},
volume = {59},
number = {8},
pages = {3370--3388},
year = {2019},
url = {https://doi.org/10.1021/acs.jcim.9b00237},
doi = {10.1021/ACS.JCIM.9B00237},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/YangSJCEGGHKMPS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/YangSJCEGGHKMPS19a,
author = {Kevin Yang and
Kyle Swanson and
Wengong Jin and
Connor W. Coley and
Philipp Eiden and
Hua Gao and
Angel Guzman{-}Perez and
Timothy Hopper and
Brian Kelley and
Miriam Mathea and
Andrew Palmer and
Volker Settels and
Tommi S. Jaakkola and
Klavs F. Jensen and
Regina Barzilay},
title = {Correction to Analyzing Learned Molecular Representations for Property
Prediction},
journal = {J. Chem. Inf. Model.},
volume = {59},
number = {12},
pages = {5304--5305},
year = {2019},
url = {https://doi.org/10.1021/acs.jcim.9b01076},
doi = {10.1021/ACS.JCIM.9B01076},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/YangSJCEGGHKMPS19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tit/HazanOSMJ19,
author = {Tamir Hazan and
Francesco Orabona and
Anand D. Sarwate and
Subhransu Maji and
Tommi S. Jaakkola},
title = {High Dimensional Inference With Random Maximum A-Posteriori Perturbations},
journal = {{IEEE} Trans. Inf. Theory},
volume = {65},
number = {10},
pages = {6539--6560},
year = {2019},
url = {https://doi.org/10.1109/TIT.2019.2916805},
doi = {10.1109/TIT.2019.2916805},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tit/HazanOSMJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/WangMHZJK19,
author = {Hao Wang and
Chengzhi Mao and
Hao He and
Mingmin Zhao and
Tommi S. Jaakkola and
Dina Katabi},
title = {Bidirectional Inference Networks: {A} Class of Deep Bayesian Networks
for Health Profiling},
booktitle = {The Thirty-Third {AAAI} Conference on Artificial Intelligence, {AAAI}
2019, The Thirty-First Innovative Applications of Artificial Intelligence
Conference, {IAAI} 2019, The Ninth {AAAI} Symposium on Educational
Advances in Artificial Intelligence, {EAAI} 2019, Honolulu, Hawaii,
USA, January 27 - February 1, 2019},
pages = {766--773},
publisher = {{AAAI} Press},
year = {2019},
url = {https://doi.org/10.1609/aaai.v33i01.3301766},
doi = {10.1609/AAAI.V33I01.3301766},
timestamp = {Mon, 04 Sep 2023 12:29:24 +0200},
biburl = {https://dblp.org/rec/conf/aaai/WangMHZJK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/Alvarez-MelisJJ19,
author = {David Alvarez{-}Melis and
Stefanie Jegelka and
Tommi S. Jaakkola},
editor = {Kamalika Chaudhuri and
Masashi Sugiyama},
title = {Towards Optimal Transport with Global Invariances},
booktitle = {The 22nd International Conference on Artificial Intelligence and Statistics,
{AISTATS} 2019, 16-18 April 2019, Naha, Okinawa, Japan},
series = {Proceedings of Machine Learning Research},
volume = {89},
pages = {1870--1879},
publisher = {{PMLR}},
year = {2019},
url = {http://proceedings.mlr.press/v89/alvarez-melis19a.html},
timestamp = {Fri, 07 Jun 2019 09:03:47 +0200},
biburl = {https://dblp.org/rec/conf/aistats/Alvarez-MelisJJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/YuCZJ19,
author = {Mo Yu and
Shiyu Chang and
Yang Zhang and
Tommi S. Jaakkola},
editor = {Kentaro Inui and
Jing Jiang and
Vincent Ng and
Xiaojun Wan},
title = {Rethinking Cooperative Rationalization: Introspective Extraction and
Complement Control},
booktitle = {Proceedings of the 2019 Conference on Empirical Methods in Natural
Language Processing and the 9th International Joint Conference on
Natural Language Processing, {EMNLP-IJCNLP} 2019, Hong Kong, China,
November 3-7, 2019},
pages = {4092--4101},
publisher = {Association for Computational Linguistics},
year = {2019},
url = {https://doi.org/10.18653/v1/D19-1420},
doi = {10.18653/V1/D19-1420},
timestamp = {Tue, 09 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/YuCZJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/IngrahamGBJ19,
author = {John Ingraham and
Vikas K. Garg and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Generative Models for Graph-Based Protein Design},
booktitle = {Deep Generative Models for Highly Structured Data, {ICLR} 2019 Workshop,
New Orleans, Louisiana, United States, May 6, 2019},
publisher = {OpenReview.net},
year = {2019},
url = {https://openreview.net/forum?id=SJgxrLLKOE},
timestamp = {Thu, 25 Jul 2019 16:26:32 +0200},
biburl = {https://dblp.org/rec/conf/iclr/IngrahamGBJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/JinYBJ19,
author = {Wengong Jin and
Kevin Yang and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Learning Multimodal Graph-to-Graph Translation for Molecule Optimization},
booktitle = {7th International Conference on Learning Representations, {ICLR} 2019,
New Orleans, LA, USA, May 6-9, 2019},
publisher = {OpenReview.net},
year = {2019},
url = {https://openreview.net/forum?id=B1xJAsA5F7},
timestamp = {Thu, 25 Jul 2019 13:03:15 +0200},
biburl = {https://dblp.org/rec/conf/iclr/JinYBJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/LeeAJ19,
author = {Guang{-}He Lee and
David Alvarez{-}Melis and
Tommi S. Jaakkola},
title = {Towards Robust, Locally Linear Deep Networks},
booktitle = {7th International Conference on Learning Representations, {ICLR} 2019,
New Orleans, LA, USA, May 6-9, 2019},
publisher = {OpenReview.net},
year = {2019},
url = {https://openreview.net/forum?id=SylCrnCcFX},
timestamp = {Thu, 25 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/LeeAJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/LeeJAJ19,
author = {Guang{-}He Lee and
Wengong Jin and
David Alvarez{-}Melis and
Tommi S. Jaakkola},
editor = {Kamalika Chaudhuri and
Ruslan Salakhutdinov},
title = {Functional Transparency for Structured Data: a Game-Theoretic Approach},
booktitle = {Proceedings of the 36th International Conference on Machine Learning,
{ICML} 2019, 9-15 June 2019, Long Beach, California, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {97},
pages = {3723--3733},
publisher = {{PMLR}},
year = {2019},
url = {http://proceedings.mlr.press/v97/lee19b.html},
timestamp = {Tue, 11 Jun 2019 15:37:38 +0200},
biburl = {https://dblp.org/rec/conf/icml/LeeJAJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/LeeYCJ19,
author = {Guang{-}He Lee and
Yang Yuan and
Shiyu Chang and
Tommi S. Jaakkola},
editor = {Hanna M. Wallach and
Hugo Larochelle and
Alina Beygelzimer and
Florence d'Alch{\'{e}}{-}Buc and
Emily B. Fox and
Roman Garnett},
title = {Tight Certificates of Adversarial Robustness for Randomly Smoothed
Classifiers},
booktitle = {Advances in Neural Information Processing Systems 32: Annual Conference
on Neural Information Processing Systems 2019, NeurIPS 2019, December
8-14, 2019, Vancouver, BC, Canada},
pages = {4911--4922},
year = {2019},
url = {https://proceedings.neurips.cc/paper/2019/hash/fa2e8c4385712f9a1d24c363a2cbe5b8-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/LeeYCJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/LorberbomJGH19,
author = {Guy Lorberbom and
Tommi S. Jaakkola and
Andreea Gane and
Tamir Hazan},
editor = {Hanna M. Wallach and
Hugo Larochelle and
Alina Beygelzimer and
Florence d'Alch{\'{e}}{-}Buc and
Emily B. Fox and
Roman Garnett},
title = {Direct Optimization through arg max for Discrete Variational Auto-Encoder},
booktitle = {Advances in Neural Information Processing Systems 32: Annual Conference
on Neural Information Processing Systems 2019, NeurIPS 2019, December
8-14, 2019, Vancouver, BC, Canada},
pages = {6200--6211},
year = {2019},
url = {https://proceedings.neurips.cc/paper/2019/hash/1a04f965818a8533f5613003c7db243d-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/LorberbomJGH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/GargJ19,
author = {Vikas K. Garg and
Tommi S. Jaakkola},
editor = {Hanna M. Wallach and
Hugo Larochelle and
Alina Beygelzimer and
Florence d'Alch{\'{e}}{-}Buc and
Emily B. Fox and
Roman Garnett},
title = {Solving graph compression via optimal transport},
booktitle = {Advances in Neural Information Processing Systems 32: Annual Conference
on Neural Information Processing Systems 2019, NeurIPS 2019, December
8-14, 2019, Vancouver, BC, Canada},
pages = {8012--8023},
year = {2019},
url = {https://proceedings.neurips.cc/paper/2019/hash/8fc983a91396319d8c394084e2d749d7-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/GargJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/ChangZYJ19,
author = {Shiyu Chang and
Yang Zhang and
Mo Yu and
Tommi S. Jaakkola},
editor = {Hanna M. Wallach and
Hugo Larochelle and
Alina Beygelzimer and
Florence d'Alch{\'{e}}{-}Buc and
Emily B. Fox and
Roman Garnett},
title = {A Game Theoretic Approach to Class-wise Selective Rationalization},
booktitle = {Advances in Neural Information Processing Systems 32: Annual Conference
on Neural Information Processing Systems 2019, NeurIPS 2019, December
8-14, 2019, Vancouver, BC, Canada},
pages = {10055--10065},
year = {2019},
url = {https://proceedings.neurips.cc/paper/2019/hash/5ad742cd15633b26fdce1b80f7b39f7c-Abstract.html},
timestamp = {Tue, 09 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nips/ChangZYJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/IngrahamGBJ19,
author = {John Ingraham and
Vikas K. Garg and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Hanna M. Wallach and
Hugo Larochelle and
Alina Beygelzimer and
Florence d'Alch{\'{e}}{-}Buc and
Emily B. Fox and
Roman Garnett},
title = {Generative Models for Graph-Based Protein Design},
booktitle = {Advances in Neural Information Processing Systems 32: Annual Conference
on Neural Information Processing Systems 2019, NeurIPS 2019, December
8-14, 2019, Vancouver, BC, Canada},
pages = {15794--15805},
year = {2019},
url = {https://proceedings.neurips.cc/paper/2019/hash/f3a4ff4839c56a5f460c88cce3666a2b-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/IngrahamGBJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1902-02037,
author = {Hao Wang and
Chengzhi Mao and
Hao He and
Mingmin Zhao and
Tommi S. Jaakkola and
Dina Katabi},
title = {Bidirectional Inference Networks: {A} Class of Deep Bayesian Networks
for Health Profiling},
journal = {CoRR},
volume = {abs/1902.02037},
year = {2019},
url = {http://arxiv.org/abs/1902.02037},
eprinttype = {arXiv},
eprint = {1902.02037},
timestamp = {Fri, 23 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1902-02037.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1902-09737,
author = {Guang{-}He Lee and
Wengong Jin and
David Alvarez{-}Melis and
Tommi S. Jaakkola},
title = {Functional Transparency for Structured Data: a Game-Theoretic Approach},
journal = {CoRR},
volume = {abs/1902.09737},
year = {2019},
url = {http://arxiv.org/abs/1902.09737},
eprinttype = {arXiv},
eprint = {1902.09737},
timestamp = {Tue, 21 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1902-09737.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1903-06538,
author = {Paresh Malalur and
Tommi S. Jaakkola},
title = {Alignment Based Matching Networks for One-Shot Classification and
Open-Set Recognition},
journal = {CoRR},
volume = {abs/1903.06538},
year = {2019},
url = {http://arxiv.org/abs/1903.06538},
eprinttype = {arXiv},
eprint = {1903.06538},
timestamp = {Mon, 03 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1903-06538.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1904-01561,
author = {Kevin Yang and
Kyle Swanson and
Wengong Jin and
Connor W. Coley and
Philipp Eiden and
Hua Gao and
Angel Guzman{-}Perez and
Timothy Hopper and
Brian Kelley and
Miriam Mathea and
Andrew Palmer and
Volker Settels and
Tommi S. Jaakkola and
Klavs F. Jensen and
Regina Barzilay},
title = {Are Learned Molecular Representations Ready For Prime Time?},
journal = {CoRR},
volume = {abs/1904.01561},
year = {2019},
url = {http://arxiv.org/abs/1904.01561},
eprinttype = {arXiv},
eprint = {1904.01561},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1904-01561.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1905-12158,
author = {Vikas K. Garg and
Tommi S. Jaakkola},
title = {Solving graph compression via optimal transport},
journal = {CoRR},
volume = {abs/1905.12158},
year = {2019},
url = {http://arxiv.org/abs/1905.12158},
eprinttype = {arXiv},
eprint = {1905.12158},
timestamp = {Mon, 03 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1905-12158.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1905-12169,
author = {Vikas K. Garg and
Tommi S. Jaakkola},
title = {Strategic Prediction with Latent Aggregative Games},
journal = {CoRR},
volume = {abs/1905.12169},
year = {2019},
url = {http://arxiv.org/abs/1905.12169},
eprinttype = {arXiv},
eprint = {1905.12169},
timestamp = {Mon, 03 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1905-12169.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1905-12712,
author = {Benson Chen and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Path-Augmented Graph Transformer Network},
journal = {CoRR},
volume = {abs/1905.12712},
year = {2019},
url = {http://arxiv.org/abs/1905.12712},
eprinttype = {arXiv},
eprint = {1905.12712},
timestamp = {Mon, 03 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1905-12712.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1905-12777,
author = {Tianxiao Shen and
Jonas Mueller and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Latent Space Secrets of Denoising Text-Autoencoders},
journal = {CoRR},
volume = {abs/1905.12777},
year = {2019},
url = {http://arxiv.org/abs/1905.12777},
eprinttype = {arXiv},
eprint = {1905.12777},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1905-12777.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1906-04948,
author = {Guang{-}He Lee and
Yang Yuan and
Shiyu Chang and
Tommi S. Jaakkola},
title = {A Stratified Approach to Robustness for Randomly Smoothed Classifiers},
journal = {CoRR},
volume = {abs/1906.04948},
year = {2019},
url = {http://arxiv.org/abs/1906.04948},
eprinttype = {arXiv},
eprint = {1906.04948},
timestamp = {Fri, 14 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1906-04948.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1907-03207,
author = {Guang{-}He Lee and
David Alvarez{-}Melis and
Tommi S. Jaakkola},
title = {Towards Robust, Locally Linear Deep Networks},
journal = {CoRR},
volume = {abs/1907.03207},
year = {2019},
url = {http://arxiv.org/abs/1907.03207},
eprinttype = {arXiv},
eprint = {1907.03207},
timestamp = {Wed, 17 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1907-03207.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1907-11223,
author = {Wengong Jin and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Multi-resolution Autoregressive Graph-to-Graph Translation for Molecules},
journal = {CoRR},
volume = {abs/1907.11223},
year = {2019},
url = {http://arxiv.org/abs/1907.11223},
eprinttype = {arXiv},
eprint = {1907.11223},
timestamp = {Tue, 30 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1907-11223.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1909-13488,
author = {Guang{-}He Lee and
Tommi S. Jaakkola},
title = {Locally Constant Networks},
journal = {CoRR},
volume = {abs/1909.13488},
year = {2019},
url = {http://arxiv.org/abs/1909.13488},
eprinttype = {arXiv},
eprint = {1909.13488},
timestamp = {Wed, 02 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1909-13488.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1910-09688,
author = {Benson Chen and
Tianxiao Shen and
Tommi S. Jaakkola and
Regina Barzilay},
title = {Learning to Make Generalizable and Diverse Predictions for Retrosynthesis},
journal = {CoRR},
volume = {abs/1910.09688},
year = {2019},
url = {http://arxiv.org/abs/1910.09688},
eprinttype = {arXiv},
eprint = {1910.09688},
timestamp = {Fri, 25 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1910-09688.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1910-12853,
author = {Shiyu Chang and
Yang Zhang and
Mo Yu and
Tommi S. Jaakkola},
title = {A Game Theoretic Approach to Class-wise Selective Rationalization},
journal = {CoRR},
volume = {abs/1910.12853},
year = {2019},
url = {http://arxiv.org/abs/1910.12853},
eprinttype = {arXiv},
eprint = {1910.12853},
timestamp = {Tue, 09 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1910-12853.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1910-13294,
author = {Mo Yu and
Shiyu Chang and
Yang Zhang and
Tommi S. Jaakkola},
title = {Rethinking Cooperative Rationalization: Introspective Extraction and
Complement Control},
journal = {CoRR},
volume = {abs/1910.13294},
year = {2019},
url = {http://arxiv.org/abs/1910.13294},
eprinttype = {arXiv},
eprint = {1910.13294},
timestamp = {Tue, 09 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1910-13294.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1911-02536,
author = {David Alvarez{-}Melis and
Youssef Mroueh and
Tommi S. Jaakkola},
title = {Unsupervised Hierarchy Matching with Optimal Transport over Hyperbolic
Spaces},
journal = {CoRR},
volume = {abs/1911.02536},
year = {2019},
url = {http://arxiv.org/abs/1911.02536},
eprinttype = {arXiv},
eprint = {1911.02536},
timestamp = {Mon, 11 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1911-02536.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jair/NarasimhanBJ18,
author = {Karthik Narasimhan and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Grounding Language for Transfer in Deep Reinforcement Learning},
journal = {J. Artif. Intell. Res.},
volume = {63},
pages = {849--874},
year = {2018},
url = {https://doi.org/10.1613/jair.1.11263},
doi = {10.1613/JAIR.1.11263},
timestamp = {Mon, 21 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jair/NarasimhanBJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/Alvarez-MelisJJ18,
author = {David Alvarez{-}Melis and
Tommi S. Jaakkola and
Stefanie Jegelka},
editor = {Amos J. Storkey and
Fernando P{\'{e}}rez{-}Cruz},
title = {Structured Optimal Transport},
booktitle = {International Conference on Artificial Intelligence and Statistics,
{AISTATS} 2018, 9-11 April 2018, Playa Blanca, Lanzarote, Canary Islands,
Spain},
series = {Proceedings of Machine Learning Research},
volume = {84},
pages = {1771--1780},
publisher = {{PMLR}},
year = {2018},
url = {http://proceedings.mlr.press/v84/alvarez-melis18a.html},
timestamp = {Wed, 03 Apr 2019 18:17:22 +0200},
biburl = {https://dblp.org/rec/conf/aistats/Alvarez-MelisJJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/Alvarez-MelisJ18,
author = {David Alvarez{-}Melis and
Tommi S. Jaakkola},
editor = {Ellen Riloff and
David Chiang and
Julia Hockenmaier and
Jun'ichi Tsujii},
title = {Gromov-Wasserstein Alignment of Word Embedding Spaces},
booktitle = {Proceedings of the 2018 Conference on Empirical Methods in Natural
Language Processing, Brussels, Belgium, October 31 - November 4, 2018},
pages = {1881--1890},
publisher = {Association for Computational Linguistics},
year = {2018},
url = {https://doi.org/10.18653/v1/d18-1214},
doi = {10.18653/V1/D18-1214},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/Alvarez-MelisJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/JinBJ18,
author = {Wengong Jin and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Jennifer G. Dy and
Andreas Krause},
title = {Junction Tree Variational Autoencoder for Molecular Graph Generation},
booktitle = {Proceedings of the 35th International Conference on Machine Learning,
{ICML} 2018, Stockholmsm{\"{a}}ssan, Stockholm, Sweden, July
10-15, 2018},
series = {Proceedings of Machine Learning Research},
volume = {80},
pages = {2328--2337},
publisher = {{PMLR}},
year = {2018},
url = {http://proceedings.mlr.press/v80/jin18a.html},
timestamp = {Wed, 03 Apr 2019 18:17:30 +0200},
biburl = {https://dblp.org/rec/conf/icml/JinBJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/Alvarez-MelisJ18,
author = {David Alvarez{-}Melis and
Tommi S. Jaakkola},
editor = {Samy Bengio and
Hanna M. Wallach and
Hugo Larochelle and
Kristen Grauman and
Nicol{\`{o}} Cesa{-}Bianchi and
Roman Garnett},
title = {Towards Robust Interpretability with Self-Explaining Neural Networks},
booktitle = {Advances in Neural Information Processing Systems 31: Annual Conference
on Neural Information Processing Systems 2018, NeurIPS 2018, December
3-8, 2018, Montr{\'{e}}al, Canada},
pages = {7786--7795},
year = {2018},
url = {https://proceedings.neurips.cc/paper/2018/hash/3e9f0fc9b2f89e043bc6233994dfcf76-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/Alvarez-MelisJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/HewittNGJT18,
author = {Luke B. Hewitt and
Maxwell I. Nye and
Andreea Gane and
Tommi S. Jaakkola and
Joshua B. Tenenbaum},
editor = {Amir Globerson and
Ricardo Silva},
title = {The Variational Homoencoder: Learning to learn high capacity generative
models from few examples},
booktitle = {Proceedings of the Thirty-Fourth Conference on Uncertainty in Artificial
Intelligence, {UAI} 2018, Monterey, California, USA, August 6-10,
2018},
pages = {988--997},
publisher = {{AUAI} Press},
year = {2018},
url = {http://auai.org/uai2018/proceedings/papers/351.pdf},
timestamp = {Wed, 09 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/uai/HewittNGJT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1802-04364,
author = {Wengong Jin and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Junction Tree Variational Autoencoder for Molecular Graph Generation},
journal = {CoRR},
volume = {abs/1802.04364},
year = {2018},
url = {http://arxiv.org/abs/1802.04364},
eprinttype = {arXiv},
eprint = {1802.04364},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1802-04364.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-02867,
author = {Guy Lorberbom and
Andreea Gane and
Tommi S. Jaakkola and
Tamir Hazan},
title = {Direct Optimization through arg max for Discrete Variational Auto-Encoder},
journal = {CoRR},
volume = {abs/1806.02867},
year = {2018},
url = {http://arxiv.org/abs/1806.02867},
eprinttype = {arXiv},
eprint = {1806.02867},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-02867.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-07538,
author = {David Alvarez{-}Melis and
Tommi S. Jaakkola},
title = {Towards Robust Interpretability with Self-Explaining Neural Networks},
journal = {CoRR},
volume = {abs/1806.07538},
year = {2018},
url = {http://arxiv.org/abs/1806.07538},
eprinttype = {arXiv},
eprint = {1806.07538},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-07538.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-08049,
author = {David Alvarez{-}Melis and
Tommi S. Jaakkola},
title = {On the Robustness of Interpretability Methods},
journal = {CoRR},
volume = {abs/1806.08049},
year = {2018},
url = {http://arxiv.org/abs/1806.08049},
eprinttype = {arXiv},
eprint = {1806.08049},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-08049.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-09277,
author = {David Alvarez{-}Melis and
Stefanie Jegelka and
Tommi S. Jaakkola},
title = {Towards Optimal Transport with Global Invariances},
journal = {CoRR},
volume = {abs/1806.09277},
year = {2018},
url = {http://arxiv.org/abs/1806.09277},
eprinttype = {arXiv},
eprint = {1806.09277},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-09277.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1807-00130,
author = {Guang{-}He Lee and
David Alvarez{-}Melis and
Tommi S. Jaakkola},
title = {Game-Theoretic Interpretability for Temporal Modeling},
journal = {CoRR},
volume = {abs/1807.00130},
year = {2018},
url = {http://arxiv.org/abs/1807.00130},
eprinttype = {arXiv},
eprint = {1807.00130},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1807-00130.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1807-08919,
author = {Luke B. Hewitt and
Maxwell I. Nye and
Andreea Gane and
Tommi S. Jaakkola and
Joshua B. Tenenbaum},
title = {The Variational Homoencoder: Learning to learn high capacity generative
models from few examples},
journal = {CoRR},
volume = {abs/1807.08919},
year = {2018},
url = {http://arxiv.org/abs/1807.08919},
eprinttype = {arXiv},
eprint = {1807.08919},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1807-08919.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1809-00013,
author = {David Alvarez{-}Melis and
Tommi S. Jaakkola},
title = {Gromov-Wasserstein Alignment of Word Embedding Spaces},
journal = {CoRR},
volume = {abs/1809.00013},
year = {2018},
url = {http://arxiv.org/abs/1809.00013},
eprinttype = {arXiv},
eprint = {1809.00013},
timestamp = {Fri, 05 Oct 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1809-00013.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1812-01070,
author = {Wengong Jin and
Kevin Yang and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Learning Multimodal Graph-to-Graph Translation for Molecular Optimization},
journal = {CoRR},
volume = {abs/1812.01070},
year = {2018},
url = {http://arxiv.org/abs/1812.01070},
eprinttype = {arXiv},
eprint = {1812.01070},
timestamp = {Tue, 01 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1812-01070.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ColeyBGJJ17,
author = {Connor W. Coley and
Regina Barzilay and
William H. Green Jr. and
Tommi S. Jaakkola and
Klavs F. Jensen},
title = {Convolutional Embedding of Attributed Molecular Graphs for Physical
Property Prediction},
journal = {J. Chem. Inf. Model.},
volume = {57},
number = {8},
pages = {1757--1772},
year = {2017},
url = {https://doi.org/10.1021/acs.jcim.6b00601},
doi = {10.1021/ACS.JCIM.6B00601},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/ColeyBGJJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tacl/ZhangBJ17,
author = {Yuan Zhang and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Aspect-augmented Adversarial Networks for Domain Adaptation},
journal = {Trans. Assoc. Comput. Linguistics},
volume = {5},
pages = {515--528},
year = {2017},
url = {https://doi.org/10.1162/tacl\_a\_00077},
doi = {10.1162/TACL\_A\_00077},
timestamp = {Fri, 10 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tacl/ZhangBJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/MuellerRDJ17,
author = {Jonas Mueller and
David Reshef and
George Du and
Tommi S. Jaakkola},
editor = {Aarti Singh and
Xiaojin (Jerry) Zhu},
title = {Learning Optimal Interventions},
booktitle = {Proceedings of the 20th International Conference on Artificial Intelligence
and Statistics, {AISTATS} 2017, 20-22 April 2017, Fort Lauderdale,
FL, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {54},
pages = {1039--1047},
publisher = {{PMLR}},
year = {2017},
url = {http://proceedings.mlr.press/v54/mueller17a.html},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aistats/MuellerRDJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/Alvarez-MelisJ17,
author = {David Alvarez{-}Melis and
Tommi S. Jaakkola},
editor = {Martha Palmer and
Rebecca Hwa and
Sebastian Riedel},
title = {A causal framework for explaining the predictions of black-box sequence-to-sequence
models},
booktitle = {Proceedings of the 2017 Conference on Empirical Methods in Natural
Language Processing, {EMNLP} 2017, Copenhagen, Denmark, September
9-11, 2017},
pages = {412--421},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/d17-1042},
doi = {10.18653/V1/D17-1042},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/Alvarez-MelisJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/Alvarez-MelisJ17,
author = {David Alvarez{-}Melis and
Tommi S. Jaakkola},
title = {Tree-structured decoding with doubly-recurrent neural networks},
booktitle = {5th International Conference on Learning Representations, {ICLR} 2017,
Toulon, France, April 24-26, 2017, Conference Track Proceedings},
publisher = {OpenReview.net},
year = {2017},
url = {https://openreview.net/forum?id=HkYhZDqxg},
timestamp = {Thu, 25 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/Alvarez-MelisJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/LeiJBJ17,
author = {Tao Lei and
Wengong Jin and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Doina Precup and
Yee Whye Teh},
title = {Deriving Neural Architectures from Sequence and Graph Kernels},
booktitle = {Proceedings of the 34th International Conference on Machine Learning,
{ICML} 2017, Sydney, NSW, Australia, 6-11 August 2017},
series = {Proceedings of Machine Learning Research},
volume = {70},
pages = {2024--2033},
publisher = {{PMLR}},
year = {2017},
url = {http://proceedings.mlr.press/v70/lei17a.html},
timestamp = {Fri, 19 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/LeiJBJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/MuellerGJ17,
author = {Jonas Mueller and
David K. Gifford and
Tommi S. Jaakkola},
editor = {Doina Precup and
Yee Whye Teh},
title = {Sequence to Better Sequence: Continuous Revision of Combinatorial
Structures},
booktitle = {Proceedings of the 34th International Conference on Machine Learning,
{ICML} 2017, Sydney, NSW, Australia, 6-11 August 2017},
series = {Proceedings of Machine Learning Research},
volume = {70},
pages = {2536--2544},
publisher = {{PMLR}},
year = {2017},
url = {http://proceedings.mlr.press/v70/mueller17a.html},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/MuellerGJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/ZhaoYKJB17,
author = {Mingmin Zhao and
Shichao Yue and
Dina Katabi and
Tommi S. Jaakkola and
Matt T. Bianchi},
editor = {Doina Precup and
Yee Whye Teh},
title = {Learning Sleep Stages from Radio Signals: {A} Conditional Adversarial
Architecture},
booktitle = {Proceedings of the 34th International Conference on Machine Learning,
{ICML} 2017, Sydney, NSW, Australia, 6-11 August 2017},
series = {Proceedings of Machine Learning Research},
volume = {70},
pages = {4100--4109},
publisher = {{PMLR}},
year = {2017},
url = {http://proceedings.mlr.press/v70/zhao17d.html},
timestamp = {Wed, 03 Apr 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/ZhaoYKJB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/JinCBJ17,
author = {Wengong Jin and
Connor W. Coley and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Isabelle Guyon and
Ulrike von Luxburg and
Samy Bengio and
Hanna M. Wallach and
Rob Fergus and
S. V. N. Vishwanathan and
Roman Garnett},
title = {Predicting Organic Reaction Outcomes with Weisfeiler-Lehman Network},
booktitle = {Advances in Neural Information Processing Systems 30: Annual Conference
on Neural Information Processing Systems 2017, December 4-9, 2017,
Long Beach, CA, {USA}},
pages = {2607--2616},
year = {2017},
url = {https://proceedings.neurips.cc/paper/2017/hash/ced556cd9f9c0c8315cfbe0744a3baf0-Abstract.html},
timestamp = {Thu, 21 Jan 2021 13:58:27 +0100},
biburl = {https://dblp.org/rec/conf/nips/JinCBJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/GargJ17,
author = {Vikas K. Garg and
Tommi S. Jaakkola},
editor = {Isabelle Guyon and
Ulrike von Luxburg and
Samy Bengio and
Hanna M. Wallach and
Rob Fergus and
S. V. N. Vishwanathan and
Roman Garnett},
title = {Local Aggregative Games},
booktitle = {Advances in Neural Information Processing Systems 30: Annual Conference
on Neural Information Processing Systems 2017, December 4-9, 2017,
Long Beach, CA, {USA}},
pages = {5341--5351},
year = {2017},
url = {https://proceedings.neurips.cc/paper/2017/hash/44ac09ac6a149136a4102ee4b4103ae6-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/GargJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/ShenLBJ17,
author = {Tianxiao Shen and
Tao Lei and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Isabelle Guyon and
Ulrike von Luxburg and
Samy Bengio and
Hanna M. Wallach and
Rob Fergus and
S. V. N. Vishwanathan and
Roman Garnett},
title = {Style Transfer from Non-Parallel Text by Cross-Alignment},
booktitle = {Advances in Neural Information Processing Systems 30: Annual Conference
on Neural Information Processing Systems 2017, December 4-9, 2017,
Long Beach, CA, {USA}},
pages = {6830--6841},
year = {2017},
url = {https://proceedings.neurips.cc/paper/2017/hash/2d2c8394e31101a261abf1784302bf75-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/ShenLBJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/ZhangBJ17,
author = {Yuan Zhang and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Aspect-augmented Adversarial Networks for Domain Adaptation},
journal = {CoRR},
volume = {abs/1701.00188},
year = {2017},
url = {http://arxiv.org/abs/1701.00188},
eprinttype = {arXiv},
eprint = {1701.00188},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/ZhangBJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/LeiJBJ17,
author = {Tao Lei and
Wengong Jin and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Deriving Neural Architectures from Sequence and Graph Kernels},
journal = {CoRR},
volume = {abs/1705.09037},
year = {2017},
url = {http://arxiv.org/abs/1705.09037},
eprinttype = {arXiv},
eprint = {1705.09037},
timestamp = {Fri, 19 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/LeiJBJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/ShenLBJ17,
author = {Tianxiao Shen and
Tao Lei and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Style Transfer from Non-Parallel Text by Cross-Alignment},
journal = {CoRR},
volume = {abs/1705.09655},
year = {2017},
url = {http://arxiv.org/abs/1705.09655},
eprinttype = {arXiv},
eprint = {1705.09655},
timestamp = {Fri, 19 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/ShenLBJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/Alvarez-MelisJ17,
author = {David Alvarez{-}Melis and
Tommi S. Jaakkola},
title = {A causal framework for explaining the predictions of black-box sequence-to-sequence
models},
journal = {CoRR},
volume = {abs/1707.01943},
year = {2017},
url = {http://arxiv.org/abs/1707.01943},
eprinttype = {arXiv},
eprint = {1707.01943},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/Alvarez-MelisJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1708-00133,
author = {Karthik Narasimhan and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Deep Transfer in Reinforcement Learning by Language Grounding},
journal = {CoRR},
volume = {abs/1708.00133},
year = {2017},
url = {http://arxiv.org/abs/1708.00133},
eprinttype = {arXiv},
eprint = {1708.00133},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1708-00133.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1709-04555,
author = {Wengong Jin and
Connor W. Coley and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Predicting Organic Reaction Outcomes with Weisfeiler-Lehman Network},
journal = {CoRR},
volume = {abs/1709.04555},
year = {2017},
url = {http://arxiv.org/abs/1709.04555},
eprinttype = {arXiv},
eprint = {1709.04555},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1709-04555.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1712-06199,
author = {David Alvarez{-}Melis and
Tommi S. Jaakkola and
Stefanie Jegelka},
title = {Structured Optimal Transport},
journal = {CoRR},
volume = {abs/1712.06199},
year = {2017},
url = {http://arxiv.org/abs/1712.06199},
eprinttype = {arXiv},
eprint = {1712.06199},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1712-06199.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tacl/HashimotoAJ16,
author = {Tatsunori B. Hashimoto and
David Alvarez{-}Melis and
Tommi S. Jaakkola},
title = {Word Embeddings as Metric Recovery in Semantic Spaces},
journal = {Trans. Assoc. Comput. Linguistics},
volume = {4},
pages = {273--286},
year = {2016},
url = {https://doi.org/10.1162/tacl\_a\_00098},
doi = {10.1162/TACL\_A\_00098},
timestamp = {Fri, 10 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tacl/HashimotoAJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/GargRJ16,
author = {Vikas K. Garg and
Cynthia Rudin and
Tommi S. Jaakkola},
editor = {Arthur Gretton and
Christian C. Robert},
title = {{CRAFT:} ClusteR-specific Assorted Feature selecTion},
booktitle = {Proceedings of the 19th International Conference on Artificial Intelligence
and Statistics, {AISTATS} 2016, Cadiz, Spain, May 9-11, 2016},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {51},
pages = {305--313},
publisher = {JMLR.org},
year = {2016},
url = {http://proceedings.mlr.press/v51/garg16.html},
timestamp = {Wed, 29 May 2019 08:41:44 +0200},
biburl = {https://dblp.org/rec/conf/aistats/GargRJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/LeiBJ16,
author = {Tao Lei and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Jian Su and
Xavier Carreras and
Kevin Duh},
title = {Rationalizing Neural Predictions},
booktitle = {Proceedings of the 2016 Conference on Empirical Methods in Natural
Language Processing, {EMNLP} 2016, Austin, Texas, USA, November 1-4,
2016},
pages = {107--117},
publisher = {The Association for Computational Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/d16-1011},
doi = {10.18653/V1/D16-1011},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/LeiBJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/GuLBJ16,
author = {Youyang Gu and
Tao Lei and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Jian Su and
Xavier Carreras and
Kevin Duh},
title = {Learning to refine text based recommendations},
booktitle = {Proceedings of the 2016 Conference on Empirical Methods in Natural
Language Processing, {EMNLP} 2016, Austin, Texas, USA, November 1-4,
2016},
pages = {2103--2108},
publisher = {The Association for Computational Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/d16-1227},
doi = {10.18653/V1/D16-1227},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/GuLBJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/HashimotoGJ16,
author = {Tatsunori B. Hashimoto and
David K. Gifford and
Tommi S. Jaakkola},
editor = {Maria{-}Florina Balcan and
Kilian Q. Weinberger},
title = {Learning Population-Level Diffusions with Generative RNNs},
booktitle = {Proceedings of the 33nd International Conference on Machine Learning,
{ICML} 2016, New York City, NY, USA, June 19-24, 2016},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {48},
pages = {2417--2426},
publisher = {JMLR.org},
year = {2016},
url = {http://proceedings.mlr.press/v48/hashimoto16.html},
timestamp = {Wed, 29 May 2019 08:41:46 +0200},
biburl = {https://dblp.org/rec/conf/icml/HashimotoGJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/naacl/LeiJBJTMM16,
author = {Tao Lei and
Hrishikesh Joshi and
Regina Barzilay and
Tommi S. Jaakkola and
Kateryna Tymoshenko and
Alessandro Moschitti and
Llu{\'{\i}}s M{\`{a}}rquez},
editor = {Kevin Knight and
Ani Nenkova and
Owen Rambow},
title = {Semi-supervised Question Retrieval with Gated Convolutions},
booktitle = {{NAACL} {HLT} 2016, The 2016 Conference of the North American Chapter
of the Association for Computational Linguistics: Human Language Technologies,
San Diego California, USA, June 12-17, 2016},
pages = {1279--1289},
publisher = {The Association for Computational Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/n16-1153},
doi = {10.18653/V1/N16-1153},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/naacl/LeiJBJTMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/naacl/ZhangGBJ16,
author = {Yuan Zhang and
David Gaddy and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Kevin Knight and
Ani Nenkova and
Owen Rambow},
title = {Ten Pairs to Tag - Multilingual {POS} Tagging via Coarse Mapping between
Embeddings},
booktitle = {{NAACL} {HLT} 2016, The 2016 Conference of the North American Chapter
of the Association for Computational Linguistics: Human Language Technologies,
San Diego California, USA, June 12-17, 2016},
pages = {1307--1317},
publisher = {The Association for Computational Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/n16-1156},
doi = {10.18653/V1/N16-1156},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/naacl/ZhangGBJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/GargJ16,
author = {Vikas K. Garg and
Tommi S. Jaakkola},
editor = {Daniel D. Lee and
Masashi Sugiyama and
Ulrike von Luxburg and
Isabelle Guyon and
Roman Garnett},
title = {Learning Tree Structured Potential Games},
booktitle = {Advances in Neural Information Processing Systems 29: Annual Conference
on Neural Information Processing Systems 2016, December 5-10, 2016,
Barcelona, Spain},
pages = {1552--1560},
year = {2016},
url = {https://proceedings.neurips.cc/paper/2016/hash/22ac3c5a5bf0b520d281c122d1490650-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/GargJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/HonorioJ16,
author = {Jean Honorio and
Tommi S. Jaakkola},
editor = {Alexander Ihler and
Dominik Janzing},
title = {Structured Prediction: From Gaussian Perturbations to Linear-Time
Principled Algorithms},
booktitle = {Proceedings of the Thirty-Second Conference on Uncertainty in Artificial
Intelligence, {UAI} 2016, June 25-29, 2016, New York City, NY, {USA}},
publisher = {{AUAI} Press},
year = {2016},
url = {http://auai.org/uai2016/proceedings/papers/79.pdf},
timestamp = {Mon, 05 Dec 2022 15:54:38 +0100},
biburl = {https://dblp.org/rec/conf/uai/HonorioJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HazanOSMJ16,
author = {Tamir Hazan and
Francesco Orabona and
Anand D. Sarwate and
Subhransu Maji and
Tommi S. Jaakkola},
title = {High Dimensional Inference with Random Maximum A-Posteriori Perturbations},
journal = {CoRR},
volume = {abs/1602.03571},
year = {2016},
url = {http://arxiv.org/abs/1602.03571},
eprinttype = {arXiv},
eprint = {1602.03571},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HazanOSMJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/LeiBJ16,
author = {Tao Lei and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Rationalizing Neural Predictions},
journal = {CoRR},
volume = {abs/1606.04155},
year = {2016},
url = {http://arxiv.org/abs/1606.04155},
eprinttype = {arXiv},
eprint = {1606.04155},
timestamp = {Fri, 19 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/LeiBJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/MuellerRDJ16,
author = {Jonas Mueller and
David Reshef and
George Du and
Tommi S. Jaakkola},
title = {Learning Optimal Interventions},
journal = {CoRR},
volume = {abs/1606.05027},
year = {2016},
url = {http://arxiv.org/abs/1606.05027},
eprinttype = {arXiv},
eprint = {1606.05027},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/MuellerRDJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tacl/NarasimhanBJ15,
author = {Karthik Narasimhan and
Regina Barzilay and
Tommi S. Jaakkola},
title = {An Unsupervised Method for Uncovering Morphological Chains},
journal = {Trans. Assoc. Comput. Linguistics},
volume = {3},
pages = {157--167},
year = {2015},
url = {https://doi.org/10.1162/tacl\_a\_00130},
doi = {10.1162/TACL\_A\_00130},
timestamp = {Fri, 10 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tacl/NarasimhanBJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/HashimotoSJ15,
author = {Tatsunori B. Hashimoto and
Yi Sun and
Tommi S. Jaakkola},
editor = {Guy Lebanon and
S. V. N. Vishwanathan},
title = {Metric recovery from directed unweighted graphs},
booktitle = {Proceedings of the Eighteenth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2015, San Diego, California,
USA, May 9-12, 2015},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {38},
publisher = {JMLR.org},
year = {2015},
url = {http://proceedings.mlr.press/v38/hashimoto15.html},
timestamp = {Mon, 15 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aistats/HashimotoSJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/LeiBJ15,
author = {Tao Lei and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Llu{\'{\i}}s M{\`{a}}rquez and
Chris Callison{-}Burch and
Jian Su and
Daniele Pighin and
Yuval Marton},
title = {Molding CNNs for text: non-linear, non-consecutive convolutions},
booktitle = {Proceedings of the 2015 Conference on Empirical Methods in Natural
Language Processing, {EMNLP} 2015, Lisbon, Portugal, September 17-21,
2015},
pages = {1565--1575},
publisher = {The Association for Computational Linguistics},
year = {2015},
url = {https://doi.org/10.18653/v1/d15-1180},
doi = {10.18653/V1/D15-1180},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/LeiBJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/MuellerJ15,
author = {Jonas Mueller and
Tommi S. Jaakkola},
editor = {Corinna Cortes and
Neil D. Lawrence and
Daniel D. Lee and
Masashi Sugiyama and
Roman Garnett},
title = {Principal Differences Analysis: Interpretable Characterization of
Differences between Distributions},
booktitle = {Advances in Neural Information Processing Systems 28: Annual Conference
on Neural Information Processing Systems 2015, December 7-12, 2015,
Montreal, Quebec, Canada},
pages = {1702--1710},
year = {2015},
url = {https://proceedings.neurips.cc/paper/2015/hash/83fa5a432ae55c253d0e60dbfa716723-Abstract.html},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nips/MuellerJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/HashimotoSJ15,
author = {Tatsunori B. Hashimoto and
Yi Sun and
Tommi S. Jaakkola},
editor = {Corinna Cortes and
Neil D. Lawrence and
Daniel D. Lee and
Masashi Sugiyama and
Roman Garnett},
title = {From random walks to distances on unweighted graphs},
booktitle = {Advances in Neural Information Processing Systems 28: Annual Conference
on Neural Information Processing Systems 2015, December 7-12, 2015,
Montreal, Quebec, Canada},
pages = {3429--3437},
year = {2015},
url = {https://proceedings.neurips.cc/paper/2015/hash/68148596109e38cf9367d27875e185be-Abstract.html},
timestamp = {Mon, 15 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nips/HashimotoSJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/NarasimhanBJ15,
author = {Karthik Narasimhan and
Regina Barzilay and
Tommi S. Jaakkola},
title = {An Unsupervised Method for Uncovering Morphological Chains},
journal = {CoRR},
volume = {abs/1503.02335},
year = {2015},
url = {http://arxiv.org/abs/1503.02335},
eprinttype = {arXiv},
eprint = {1503.02335},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/NarasimhanBJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/GargRJ15,
author = {Vikas K. Garg and
Cynthia Rudin and
Tommi S. Jaakkola},
title = {{CRAFT:} ClusteR-specific Assorted Feature selecTion},
journal = {CoRR},
volume = {abs/1506.07609},
year = {2015},
url = {http://arxiv.org/abs/1506.07609},
eprinttype = {arXiv},
eprint = {1506.07609},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/GargRJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HonorioJ15,
author = {Jean Honorio and
Tommi S. Jaakkola},
title = {Structured Prediction: From Gaussian Perturbations to Linear-Time
Principled Algorithms},
journal = {CoRR},
volume = {abs/1508.00945},
year = {2015},
url = {http://arxiv.org/abs/1508.00945},
eprinttype = {arXiv},
eprint = {1508.00945},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HonorioJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/LeiBJ15,
author = {Tao Lei and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Molding CNNs for text: non-linear, non-consecutive convolutions},
journal = {CoRR},
volume = {abs/1508.04112},
year = {2015},
url = {http://arxiv.org/abs/1508.04112},
eprinttype = {arXiv},
eprint = {1508.04112},
timestamp = {Fri, 19 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/LeiBJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HazanJ15,
author = {Tamir Hazan and
Tommi S. Jaakkola},
title = {Steps Toward Deep Kernel Methods from Infinite Neural Networks},
journal = {CoRR},
volume = {abs/1508.05133},
year = {2015},
url = {http://arxiv.org/abs/1508.05133},
eprinttype = {arXiv},
eprint = {1508.05133},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HazanJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HashimotoAJ15,
author = {Tatsunori B. Hashimoto and
David Alvarez{-}Melis and
Tommi S. Jaakkola},
title = {Word, graph and manifold embedding from Markov processes},
journal = {CoRR},
volume = {abs/1509.05808},
year = {2015},
url = {http://arxiv.org/abs/1509.05808},
eprinttype = {arXiv},
eprint = {1509.05808},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HashimotoAJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/MuellerJ15,
author = {Jonas Mueller and
Tommi S. Jaakkola},
title = {Principal Differences Analysis: Interpretable Characterization of
Differences between Distributions},
journal = {CoRR},
volume = {abs/1510.08956},
year = {2015},
url = {http://arxiv.org/abs/1510.08956},
eprinttype = {arXiv},
eprint = {1510.08956},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/MuellerJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HashimotoSJ15,
author = {Tatsunori B. Hashimoto and
Yi Sun and
Tommi S. Jaakkola},
title = {From random walks to distances on unweighted graphs},
journal = {CoRR},
volume = {abs/1511.00573},
year = {2015},
url = {http://arxiv.org/abs/1511.00573},
eprinttype = {arXiv},
eprint = {1511.00573},
timestamp = {Mon, 15 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HashimotoSJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/LeiJBJTMV15,
author = {Tao Lei and
Hrishikesh Joshi and
Regina Barzilay and
Tommi S. Jaakkola and
Kateryna Tymoshenko and
Alessandro Moschitti and
Llu{\'{\i}}s M{\`{a}}rquez i Villodre},
title = {Denoising Bodies to Titles: Retrieving Similar Questions with Recurrent
Convolutional Models},
journal = {CoRR},
volume = {abs/1512.05726},
year = {2015},
url = {http://arxiv.org/abs/1512.05726},
eprinttype = {arXiv},
eprint = {1512.05726},
timestamp = {Fri, 19 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/LeiJBJTMV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HannekeJY15,
author = {Steve Hanneke and
Tommi S. Jaakkola and
Liu Yang},
title = {Statistical Learning under Nonstationary Mixing Processes},
journal = {CoRR},
volume = {abs/1512.08064},
year = {2015},
url = {http://arxiv.org/abs/1512.08064},
eprinttype = {arXiv},
eprint = {1512.08064},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HannekeJY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/ZhangLBJG14,
author = {Yuan Zhang and
Tao Lei and
Regina Barzilay and
Tommi S. Jaakkola and
Amir Globerson},
title = {Steps to Excellence: Simple Inference with Refined Scoring of Dependency
Trees},
booktitle = {Proceedings of the 52nd Annual Meeting of the Association for Computational
Linguistics, {ACL} 2014, June 22-27, 2014, Baltimore, MD, USA, Volume
1: Long Papers},
pages = {197--207},
publisher = {The Association for Computer Linguistics},
year = {2014},
url = {https://doi.org/10.3115/v1/p14-1019},
doi = {10.3115/V1/P14-1019},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/ZhangLBJG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/LeiXZBJ14,
author = {Tao Lei and
Yu Xin and
Yuan Zhang and
Regina Barzilay and
Tommi S. Jaakkola},
title = {Low-Rank Tensors for Scoring Dependency Structures},
booktitle = {Proceedings of the 52nd Annual Meeting of the Association for Computational
Linguistics, {ACL} 2014, June 22-27, 2014, Baltimore, MD, USA, Volume
1: Long Papers},
pages = {1381--1391},
publisher = {The Association for Computer Linguistics},
year = {2014},
url = {https://doi.org/10.3115/v1/p14-1130},
doi = {10.3115/V1/P14-1130},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/LeiXZBJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/GaneHJ14,
author = {Andreea Gane and
Tamir Hazan and
Tommi S. Jaakkola},
title = {Learning with Maximum A-Posteriori Perturbation Models},
booktitle = {Proceedings of the Seventeenth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2014, Reykjavik, Iceland, April
22-25, 2014},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {33},
pages = {247--256},
publisher = {JMLR.org},
year = {2014},
url = {http://proceedings.mlr.press/v33/gane14.html},
timestamp = {Wed, 29 May 2019 08:41:44 +0200},
biburl = {https://dblp.org/rec/conf/aistats/GaneHJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/HonorioJ14,
author = {Jean Honorio and
Tommi S. Jaakkola},
title = {Tight Bounds for the Expected Risk of Linear Classifiers and PAC-Bayes
Finite-Sample Guarantees},
booktitle = {Proceedings of the Seventeenth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2014, Reykjavik, Iceland, April
22-25, 2014},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {33},
pages = {384--392},
publisher = {JMLR.org},
year = {2014},
url = {http://proceedings.mlr.press/v33/honorio14.html},
timestamp = {Wed, 29 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aistats/HonorioJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/MajiHJ14,
author = {Subhransu Maji and
Tamir Hazan and
Tommi S. Jaakkola},
title = {Active Boundary Annotation using Random {MAP} Perturbations},
booktitle = {Proceedings of the Seventeenth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2014, Reykjavik, Iceland, April
22-25, 2014},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {33},
pages = {604--613},
publisher = {JMLR.org},
year = {2014},
url = {http://proceedings.mlr.press/v33/maji14.html},
timestamp = {Wed, 29 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aistats/MajiHJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/ZhangLBJ14,
author = {Yuan Zhang and
Tao Lei and
Regina Barzilay and
Tommi S. Jaakkola},
editor = {Alessandro Moschitti and
Bo Pang and
Walter Daelemans},
title = {Greed is Good if Randomized: New Inference for Dependency Parsing},
booktitle = {Proceedings of the 2014 Conference on Empirical Methods in Natural
Language Processing, {EMNLP} 2014, October 25-29, 2014, Doha, Qatar,
{A} meeting of SIGDAT, a Special Interest Group of the {ACL}},
pages = {1013--1024},
publisher = {{ACL}},
year = {2014},
url = {https://doi.org/10.3115/v1/d14-1109},
doi = {10.3115/V1/D14-1109},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/ZhangLBJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/HonorioJ14,
author = {Jean Honorio and
Tommi S. Jaakkola},
title = {A Unified Framework for Consistency of Regularized Loss Minimizers},
booktitle = {Proceedings of the 31th International Conference on Machine Learning,
{ICML} 2014, Beijing, China, 21-26 June 2014},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {32},
pages = {136--144},
publisher = {JMLR.org},
year = {2014},
url = {http://proceedings.mlr.press/v32/honorio14.html},
timestamp = {Wed, 29 May 2019 08:41:45 +0200},
biburl = {https://dblp.org/rec/conf/icml/HonorioJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/OrabonaHSJ14,
author = {Francesco Orabona and
Tamir Hazan and
Anand D. Sarwate and
Tommi S. Jaakkola},
title = {On Measure Concentration of Random Maximum A-Posteriori Perturbations},
booktitle = {Proceedings of the 31th International Conference on Machine Learning,
{ICML} 2014, Beijing, China, 21-26 June 2014},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {32},
pages = {432--440},
publisher = {JMLR.org},
year = {2014},
url = {http://proceedings.mlr.press/v32/orabona14.html},
timestamp = {Wed, 29 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/OrabonaHSJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/XinJ14,
author = {Yu Xin and
Tommi S. Jaakkola},
editor = {Zoubin Ghahramani and
Max Welling and
Corinna Cortes and
Neil D. Lawrence and
Kilian Q. Weinberger},
title = {Controlling privacy in recommender systems},
booktitle = {Advances in Neural Information Processing Systems 27: Annual Conference
on Neural Information Processing Systems 2014, December 8-13 2014,
Montreal, Quebec, Canada},
pages = {2618--2626},
year = {2014},
url = {https://proceedings.neurips.cc/paper/2014/hash/6c1da886822c67822bcf3679d04369fa-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/XinJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HashimotoSJ14,
author = {Tatsunori B. Hashimoto and
Yi Sun and
Tommi S. Jaakkola},
title = {Metric recovery from directed unweighted graphs},
journal = {CoRR},
volume = {abs/1411.5720},
year = {2014},
url = {http://arxiv.org/abs/1411.5720},
eprinttype = {arXiv},
eprint = {1411.5720},
timestamp = {Mon, 15 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HashimotoSJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/HonorioJ13,
author = {Jean Honorio and
Tommi S. Jaakkola},
title = {Two-Sided Exponential Concentration Bounds for Bayes Error Rate and
Shannon Entropy},
booktitle = {Proceedings of the 30th International Conference on Machine Learning,
{ICML} 2013, Atlanta, GA, USA, 16-21 June 2013},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {28},
pages = {459--467},
publisher = {JMLR.org},
year = {2013},
url = {http://proceedings.mlr.press/v28/honorio13.html},
timestamp = {Wed, 29 May 2019 08:41:45 +0200},
biburl = {https://dblp.org/rec/conf/icml/HonorioJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/HazanMJ13,
author = {Tamir Hazan and
Subhransu Maji and
Tommi S. Jaakkola},
editor = {Christopher J. C. Burges and
L{\'{e}}on Bottou and
Zoubin Ghahramani and
Kilian Q. Weinberger},
title = {On Sampling from the Gibbs Distribution with Random Maximum A-Posteriori
Perturbations},
booktitle = {Advances in Neural Information Processing Systems 26: 27th Annual
Conference on Neural Information Processing Systems 2013. Proceedings
of a meeting held December 5-8, 2013, Lake Tahoe, Nevada, United States},
pages = {1268--1276},
year = {2013},
url = {https://proceedings.neurips.cc/paper/2013/hash/443cb001c138b2561a0d90720d6ce111-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/HazanMJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/HazanMKJ13,
author = {Tamir Hazan and
Subhransu Maji and
Joseph Keshet and
Tommi S. Jaakkola},
editor = {Christopher J. C. Burges and
L{\'{e}}on Bottou and
Zoubin Ghahramani and
Kilian Q. Weinberger},
title = {Learning Efficient Random Maximum A-Posteriori Predictors with Non-Decomposable
Loss Functions},
booktitle = {Advances in Neural Information Processing Systems 26: 27th Annual
Conference on Neural Information Processing Systems 2013. Proceedings
of a meeting held December 5-8, 2013, Lake Tahoe, Nevada, United States},
pages = {1887--1895},
year = {2013},
url = {https://proceedings.neurips.cc/paper/2013/hash/8065d07da4a77621450aa84fee5656d9-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/HazanMKJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/HonorioJ13,
author = {Jean Honorio and
Tommi S. Jaakkola},
editor = {Ann E. Nicholson and
Padhraic Smyth},
title = {Inverse Covariance Estimation for High-Dimensional Data in Linear
Time and Space: Spectral Methods for Riccati and Sparse Models},
booktitle = {Proceedings of the Twenty-Ninth Conference on Uncertainty in Artificial
Intelligence, {UAI} 2013, Bellevue, WA, USA, August 11-15, 2013},
publisher = {{AUAI} Press},
year = {2013},
url = {https://dslpitt.org/uai/displayArticleDetails.jsp?mmnu=1\&\#38;smnu=2\&\#38;article\_id=2390\&\#38;proceeding\_id=29},
timestamp = {Fri, 16 Jul 2021 16:15:58 +0200},
biburl = {https://dblp.org/rec/conf/uai/HonorioJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1301-0562,
author = {Adrian Corduneanu and
Tommi S. Jaakkola},
title = {Continuation Methods for Mixing Heterogenous Sources},
journal = {CoRR},
volume = {abs/1301.0562},
year = {2013},
url = {http://arxiv.org/abs/1301.0562},
eprinttype = {arXiv},
eprint = {1301.0562},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1301-0562.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1301-0602,
author = {Harald Steck and
Tommi S. Jaakkola},
title = {Unsupervised Active Learning in Large Domains},
journal = {CoRR},
volume = {abs/1301.0602},
year = {2013},
url = {http://arxiv.org/abs/1301.0602},
eprinttype = {arXiv},
eprint = {1301.0602},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1301-0602.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1301-0610,
author = {Martin J. Wainwright and
Tommi S. Jaakkola and
Alan S. Willsky},
title = {A New Class of Upper Bounds on the Log Partition Function},
journal = {CoRR},
volume = {abs/1301.0610},
year = {2013},
url = {http://arxiv.org/abs/1301.0610},
eprinttype = {arXiv},
eprint = {1301.0610},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1301-0610.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1301-3865,
author = {Tony Jebara and
Tommi S. Jaakkola},
title = {Feature Selection and Dualities in Maximum Entropy Discrimination},
journal = {CoRR},
volume = {abs/1301.3865},
year = {2013},
url = {http://arxiv.org/abs/1301.3865},
eprinttype = {arXiv},
eprint = {1301.3865},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1301-3865.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1301-3875,
author = {Marina Meila and
Tommi S. Jaakkola},
title = {Tractable Bayesian Learning of Tree Belief Networks},
journal = {CoRR},
volume = {abs/1301.3875},
year = {2013},
url = {http://arxiv.org/abs/1301.3875},
eprinttype = {arXiv},
eprint = {1301.3875},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1301-3875.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1302-3586,
author = {Tommi S. Jaakkola and
Michael I. Jordan},
title = {Computing Upper and Lower Bounds on Likelihoods in Intractable Networks},
journal = {CoRR},
volume = {abs/1302.3586},
year = {2013},
url = {http://arxiv.org/abs/1302.3586},
eprinttype = {arXiv},
eprint = {1302.3586},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1302-3586.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HonorioJ13,
author = {Jean Honorio and
Tommi S. Jaakkola},
title = {Inverse Covariance Estimation for High-Dimensional Data in Linear
Time and Space: Spectral Methods for Riccati and Sparse Models},
journal = {CoRR},
volume = {abs/1309.6838},
year = {2013},
url = {http://arxiv.org/abs/1309.6838},
eprinttype = {arXiv},
eprint = {1309.6838},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HonorioJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HazanMJ13,
author = {Tamir Hazan and
Subhransu Maji and
Tommi S. Jaakkola},
title = {On Sampling from the Gibbs Distribution with Random Maximum A-Posteriori
Perturbations},
journal = {CoRR},
volume = {abs/1309.7598},
year = {2013},
url = {http://arxiv.org/abs/1309.7598},
eprinttype = {arXiv},
eprint = {1309.7598},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HazanMJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/OrabonaHSJ13,
author = {Francesco Orabona and
Tamir Hazan and
Anand D. Sarwate and
Tommi S. Jaakkola},
title = {On Measure Concentration of Random Maximum A-Posteriori Perturbations},
journal = {CoRR},
volume = {abs/1310.4227},
year = {2013},
url = {http://arxiv.org/abs/1310.4227},
eprinttype = {arXiv},
eprint = {1310.4227},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/OrabonaHSJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HashimotoJSMWG12,
author = {Tatsunori B. Hashimoto and
Tommi S. Jaakkola and
Richard Sherwood and
Esteban O. Mazzoni and
Hynek Wichterle and
David K. Gifford},
title = {Lineage-based identification of cellular states and expression programs},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {250--257},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts204},
doi = {10.1093/BIOINFORMATICS/BTS204},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HashimotoJSMWG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijar/RoosMJ12,
author = {Teemu Roos and
Petri Myllym{\"{a}}ki and
Tommi S. Jaakkola},
title = {Special Issue on the Fifth European Workshop on Probabilistic Graphical
Models {(PGM-2010)}},
journal = {Int. J. Approx. Reason.},
volume = {53},
number = {9},
pages = {1303--1304},
year = {2012},
url = {https://doi.org/10.1016/j.ijar.2012.08.008},
doi = {10.1016/J.IJAR.2012.08.008},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijar/RoosMJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/HazanJ12,
author = {Tamir Hazan and
Tommi S. Jaakkola},
title = {On the Partition Function and Random Maximum A-Posteriori Perturbations},
booktitle = {Proceedings of the 29th International Conference on Machine Learning,
{ICML} 2012, Edinburgh, Scotland, UK, June 26 - July 1, 2012},
publisher = {icml.cc / Omnipress},
year = {2012},
url = {http://icml.cc/2012/papers/528.pdf},
timestamp = {Wed, 03 Apr 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/HazanJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/MeshiJG12,
author = {Ofer Meshi and
Tommi S. Jaakkola and
Amir Globerson},
editor = {Peter L. Bartlett and
Fernando C. N. Pereira and
Christopher J. C. Burges and
L{\'{e}}on Bottou and
Kilian Q. Weinberger},
title = {Convergence Rate Analysis of {MAP} Coordinate Minimization Algorithms},
booktitle = {Advances in Neural Information Processing Systems 25: 26th Annual
Conference on Neural Information Processing Systems 2012. Proceedings
of a meeting held December 3-6, 2012, Lake Tahoe, Nevada, United States},
pages = {3023--3031},
year = {2012},
url = {https://proceedings.neurips.cc/paper/2012/hash/bad5f33780c42f2588878a9d07405083-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/MeshiJG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/jmlr/XinJ12,
author = {Yu Xin and
Tommi S. Jaakkola},
editor = {Neil D. Lawrence and
Mark A. Girolami},
title = {Primal-Dual methods for sparse constrained matrix completion},
booktitle = {Proceedings of the Fifteenth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2012, La Palma, Canary Islands,
Spain, April 21-23, 2012},
series = {{JMLR} Proceedings},
volume = {22},
pages = {1323--1331},
publisher = {JMLR.org},
year = {2012},
url = {http://proceedings.mlr.press/v22/xin12.html},
timestamp = {Wed, 29 May 2019 08:41:44 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/XinJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/jmlr/KolterJ12,
author = {J. Zico Kolter and
Tommi S. Jaakkola},
editor = {Neil D. Lawrence and
Mark A. Girolami},
title = {Approximate Inference in Additive Factorial HMMs with Application
to Energy Disaggregation},
booktitle = {Proceedings of the Fifteenth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2012, La Palma, Canary Islands,
Spain, April 21-23, 2012},
series = {{JMLR} Proceedings},
volume = {22},
pages = {1472--1482},
publisher = {JMLR.org},
year = {2012},
url = {http://proceedings.mlr.press/v22/zico12.html},
timestamp = {Wed, 29 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/KolterJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1206-3288,
author = {David A. Sontag and
Talya Meltzer and
Amir Globerson and
Tommi S. Jaakkola and
Yair Weiss},
title = {Tightening {LP} Relaxations for {MAP} using Message Passing},
journal = {CoRR},
volume = {abs/1206.3288},
year = {2012},
url = {http://arxiv.org/abs/1206.3288},
eprinttype = {arXiv},
eprint = {1206.3288},
timestamp = {Fri, 15 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1206-3288.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1206-5243,
author = {Amir Globerson and
Tommi S. Jaakkola},
title = {Convergent Propagation Algorithms via Oriented Trees},
journal = {CoRR},
volume = {abs/1206.5243},
year = {2012},
url = {http://arxiv.org/abs/1206.5243},
eprinttype = {arXiv},
eprint = {1206.5243},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1206-5243.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1208-5159,
author = {Fahiem Bacchus and
Tommi S. Jaakkola},
title = {Proceedings of the Twenty-First Conference on Uncertainty in Artificial
Intelligence {(2005)}},
journal = {CoRR},
volume = {abs/1208.5159},
year = {2012},
url = {http://arxiv.org/abs/1208.5159},
eprinttype = {arXiv},
eprint = {1208.5159},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1208-5159.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1212-2466,
author = {Adrian Corduneanu and
Tommi S. Jaakkola},
title = {On Information Regularization},
journal = {CoRR},
volume = {abs/1212.2466},
year = {2012},
url = {http://arxiv.org/abs/1212.2466},
eprinttype = {arXiv},
eprint = {1212.2466},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1212-2466.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1105-5462,
author = {Tommi S. Jaakkola and
Michael I. Jordan},
title = {Variational Probabilistic Inference and the {QMR-DT} Network},
journal = {CoRR},
volume = {abs/1105.5462},
year = {2011},
url = {http://arxiv.org/abs/1105.5462},
eprinttype = {arXiv},
eprint = {1105.5462},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1105-5462.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoPAGJGM10,
author = {Yuchun Guo and
Georgios Papachristoudis and
Robert C. Altshuler and
Georg K. Gerber and
Tommi S. Jaakkola and
David K. Gifford and
Shaun Mahony},
title = {Discovering homotypic binding events at high spatial resolution},
journal = {Bioinform.},
volume = {26},
number = {24},
pages = {3028--3034},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq590},
doi = {10.1093/BIOINFORMATICS/BTQ590},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoPAGJGM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/MinkovCLTJ10,
author = {Einat Minkov and
Ben Charrow and
Jonathan Ledlie and
Seth J. Teller and
Tommi S. Jaakkola},
editor = {Jimmy X. Huang and
Nick Koudas and
Gareth J. F. Jones and
Xindong Wu and
Kevyn Collins{-}Thompson and
Aijun An},
title = {Collaborative future event recommendation},
booktitle = {Proceedings of the 19th {ACM} Conference on Information and Knowledge
Management, {CIKM} 2010, Toronto, Ontario, Canada, October 26-30,
2010},
pages = {819--828},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1871437.1871542},
doi = {10.1145/1871437.1871542},
timestamp = {Wed, 03 Aug 2022 15:48:33 +0200},
biburl = {https://dblp.org/rec/conf/cikm/MinkovCLTJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/RushSCJ10,
author = {Alexander M. Rush and
David A. Sontag and
Michael Collins and
Tommi S. Jaakkola},
title = {On Dual Decomposition and Linear Programming Relaxations for Natural
Language Processing},
booktitle = {Proceedings of the 2010 Conference on Empirical Methods in Natural
Language Processing, {EMNLP} 2010, 9-11 October 2010, {MIT} Stata
Center, Massachusetts, USA, {A} meeting of SIGDAT, a Special Interest
Group of the {ACL}},
pages = {1--11},
publisher = {{ACL}},
year = {2010},
url = {https://aclanthology.org/D10-1001/},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/RushSCJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/KooRCJS10,
author = {Terry Koo and
Alexander M. Rush and
Michael Collins and
Tommi S. Jaakkola and
David A. Sontag},
title = {Dual Decomposition for Parsing with Non-Projective Head Automata},
booktitle = {Proceedings of the 2010 Conference on Empirical Methods in Natural
Language Processing, {EMNLP} 2010, 9-11 October 2010, {MIT} Stata
Center, Massachusetts, USA, {A} meeting of SIGDAT, a Special Interest
Group of the {ACL}},
pages = {1288--1298},
publisher = {{ACL}},
year = {2010},
url = {https://aclanthology.org/D10-1125/},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/KooRCJS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/MeshiSJG10,
author = {Ofer Meshi and
David A. Sontag and
Tommi S. Jaakkola and
Amir Globerson},
editor = {Johannes F{\"{u}}rnkranz and
Thorsten Joachims},
title = {Learning Efficiently with Approximate Inference via Dual Losses},
booktitle = {Proceedings of the 27th International Conference on Machine Learning
(ICML-10), June 21-24, 2010, Haifa, Israel},
pages = {783--790},
publisher = {Omnipress},
year = {2010},
url = {https://icml.cc/Conferences/2010/papers/587.pdf},
timestamp = {Fri, 15 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icml/MeshiSJG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SontagMJG10,
author = {David A. Sontag and
Ofer Meshi and
Tommi S. Jaakkola and
Amir Globerson},
editor = {John D. Lafferty and
Christopher K. I. Williams and
John Shawe{-}Taylor and
Richard S. Zemel and
Aron Culotta},
title = {More data means less inference: {A} pseudo-max approach to structured
learning},
booktitle = {Advances in Neural Information Processing Systems 23: 24th Annual
Conference on Neural Information Processing Systems 2010. Proceedings
of a meeting held 6-9 December 2010, Vancouver, British Columbia,
Canada},
pages = {2181--2189},
publisher = {Curran Associates, Inc.},
year = {2010},
url = {https://proceedings.neurips.cc/paper/2010/hash/32b30a250abd6331e03a2a1f16466346-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/SontagMJG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/jmlr/JaakkolaSGM10,
author = {Tommi S. Jaakkola and
David A. Sontag and
Amir Globerson and
Marina Meila},
editor = {Yee Whye Teh and
D. Mike Titterington},
title = {Learning Bayesian Network Structure using {LP} Relaxations},
booktitle = {Proceedings of the Thirteenth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2010, Chia Laguna Resort, Sardinia,
Italy, May 13-15, 2010},
series = {{JMLR} Proceedings},
volume = {9},
pages = {358--365},
publisher = {JMLR.org},
year = {2010},
url = {http://proceedings.mlr.press/v9/jaakkola10a.html},
timestamp = {Fri, 15 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jmlr/JaakkolaSGM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/jmlr/SontagJ09,
author = {David A. Sontag and
Tommi S. Jaakkola},
editor = {David A. Van Dyk and
Max Welling},
title = {Tree Block Coordinate Descent for {MAP} in Graphical Models},
booktitle = {Proceedings of the Twelfth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2009, Clearwater Beach, Florida,
USA, April 16-18, 2009},
series = {{JMLR} Proceedings},
volume = {5},
pages = {544--551},
publisher = {JMLR.org},
year = {2009},
url = {http://proceedings.mlr.press/v5/sontag09a.html},
timestamp = {Fri, 15 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jmlr/SontagJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SontagGJ08,
author = {David A. Sontag and
Amir Globerson and
Tommi S. Jaakkola},
editor = {Daphne Koller and
Dale Schuurmans and
Yoshua Bengio and
L{\'{e}}on Bottou},
title = {Clusters and Coarse Partitions in {LP} Relaxations},
booktitle = {Advances in Neural Information Processing Systems 21, Proceedings
of the Twenty-Second Annual Conference on Neural Information Processing
Systems, Vancouver, British Columbia, Canada, December 8-11, 2008},
pages = {1537--1544},
publisher = {Curran Associates, Inc.},
year = {2008},
url = {https://proceedings.neurips.cc/paper/2008/hash/a1140a3d0df1c81e24ae954d935e8926-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/SontagGJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/SontagMGJW08,
author = {David A. Sontag and
Talya Meltzer and
Amir Globerson and
Tommi S. Jaakkola and
Yair Weiss},
editor = {David A. McAllester and
Petri Myllym{\"{a}}ki},
title = {Tightening {LP} Relaxations for {MAP} using Message Passing},
booktitle = {{UAI} 2008, Proceedings of the 24th Conference in Uncertainty in Artificial
Intelligence, Helsinki, Finland, July 9-12, 2008},
pages = {503--510},
publisher = {{AUAI} Press},
year = {2008},
url = {https://dslpitt.org/uai/displayArticleDetails.jsp?mmnu=1\&\#38;smnu=2\&\#38;article\_id=1322\&\#38;proceeding\_id=24},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/uai/SontagMGJW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GerberDJG07,
author = {Georg K. Gerber and
Robin D. Dowell and
Tommi S. Jaakkola and
David K. Gifford},
title = {Automated Discovery of Functional Generality of Human Gene Expression
Programs},
journal = {PLoS Comput. Biol.},
volume = {3},
number = {8},
year = {2007},
url = {https://doi.org/10.1371/journal.pcbi.0030148},
doi = {10.1371/JOURNAL.PCBI.0030148},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/GerberDJG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/GlobersonJ07,
author = {Amir Globerson and
Tommi S. Jaakkola},
editor = {John C. Platt and
Daphne Koller and
Yoram Singer and
Sam T. Roweis},
title = {Fixing Max-Product: Convergent Message Passing Algorithms for {MAP}
LP-Relaxations},
booktitle = {Advances in Neural Information Processing Systems 20, Proceedings
of the Twenty-First Annual Conference on Neural Information Processing
Systems, Vancouver, British Columbia, Canada, December 3-6, 2007},
pages = {553--560},
publisher = {Curran Associates, Inc.},
year = {2007},
url = {https://proceedings.neurips.cc/paper/2007/hash/8d6dc35e506fc23349dd10ee68dabb64-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/GlobersonJ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SontagJ07,
author = {David A. Sontag and
Tommi S. Jaakkola},
editor = {John C. Platt and
Daphne Koller and
Yoram Singer and
Sam T. Roweis},
title = {New Outer Bounds on the Marginal Polytope},
booktitle = {Advances in Neural Information Processing Systems 20, Proceedings
of the Twenty-First Annual Conference on Neural Information Processing
Systems, Vancouver, British Columbia, Canada, December 3-6, 2007},
pages = {1393--1400},
publisher = {Curran Associates, Inc.},
year = {2007},
url = {https://proceedings.neurips.cc/paper/2007/hash/2b323d6eb28422cef49b266557dd31ad-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/SontagJ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/GlobersonJ07,
author = {Amir Globerson and
Tommi S. Jaakkola},
editor = {Ronald Parr and
Linda C. van der Gaag},
title = {Convergent Propagation Algorithms via Oriented Trees},
booktitle = {{UAI} 2007, Proceedings of the Twenty-Third Conference on Uncertainty
in Artificial Intelligence, Vancouver, BC, Canada, July 19-22, 2007},
pages = {133--140},
publisher = {{AUAI} Press},
year = {2007},
url = {https://dl.acm.org/doi/10.5555/3020488.3020505},
doi = {10.5555/3020488.3020505},
timestamp = {Wed, 04 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/uai/GlobersonJ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/jmlr/GlobersonJ07,
author = {Amir Globerson and
Tommi S. Jaakkola},
editor = {Marina Meila and
Xiaotong Shen},
title = {Approximate inference using conditional entropy decompositions},
booktitle = {Proceedings of the Eleventh International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2007, San Juan, Puerto Rico,
March 21-24, 2007},
series = {{JMLR} Proceedings},
volume = {2},
pages = {130--138},
publisher = {JMLR.org},
year = {2007},
url = {http://proceedings.mlr.press/v2/globerson07a.html},
timestamp = {Wed, 29 May 2019 08:41:44 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/GlobersonJ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/jmlr/SteckJ07,
author = {Harald Steck and
Tommi S. Jaakkola},
editor = {Marina Meila and
Xiaotong Shen},
title = {Predictive Discretization during Model Selection},
booktitle = {Proceedings of the Eleventh International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2007, San Juan, Puerto Rico,
March 21-24, 2007},
series = {{JMLR} Proceedings},
volume = {2},
pages = {532--539},
publisher = {JMLR.org},
year = {2007},
url = {http://proceedings.mlr.press/v2/steck07a.html},
timestamp = {Wed, 29 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/SteckJ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YeangJ06,
author = {Chen{-}Hsiang Yeang and
Tommi S. Jaakkola},
title = {Modeling the Combinatorial Functions of Multiple Transcription Factors},
journal = {J. Comput. Biol.},
volume = {13},
number = {2},
pages = {463--480},
year = {2006},
url = {https://doi.org/10.1089/cmb.2006.13.463},
doi = {10.1089/CMB.2006.13.463},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/YeangJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sac/MeilaJ06,
author = {Marina Meila and
Tommi S. Jaakkola},
title = {Tractable Bayesian learning of tree belief networks},
journal = {Stat. Comput.},
volume = {16},
number = {1},
pages = {77--92},
year = {2006},
url = {https://doi.org/10.1007/s11222-006-5535-3},
doi = {10.1007/S11222-006-5535-3},
timestamp = {Wed, 25 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sac/MeilaJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/QiMKHJGG06,
author = {Yuan (Alan) Qi and
Patrycja E. Missiuro and
Ashish Kapoor and
Craig P. Hunter and
Tommi S. Jaakkola and
David K. Gifford and
Hui Ge},
title = {Semi-supervised analysis of gene expression profiles for lineage-specific
development in the \emph{Caenorhabditis elegans} embryo},
booktitle = {Proceedings 14th International Conference on Intelligent Systems for
Molecular Biology 2006, Fortaleza, Brazil, August 6-10, 2006},
pages = {417--423},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl256},
doi = {10.1093/BIOINFORMATICS/BTL256},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/QiMKHJGG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/GlobersonJ06,
author = {Amir Globerson and
Tommi S. Jaakkola},
editor = {Bernhard Sch{\"{o}}lkopf and
John C. Platt and
Thomas Hofmann},
title = {Approximate inference using planar graph decomposition},
booktitle = {Advances in Neural Information Processing Systems 19, Proceedings
of the Twentieth Annual Conference on Neural Information Processing
Systems, Vancouver, British Columbia, Canada, December 4-7, 2006},
pages = {473--480},
publisher = {{MIT} Press},
year = {2006},
url = {https://proceedings.neurips.cc/paper/2006/hash/975e6107778ce7a40b9878bfb96a16a7-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/GlobersonJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/Perez-BrevaOYJ06,
author = {Luis P{\'{e}}rez{-}Breva and
Luis E. Ortiz and
Chen{-}Hsiang Yeang and
Tommi S. Jaakkola},
editor = {Bernhard Sch{\"{o}}lkopf and
John C. Platt and
Thomas Hofmann},
title = {Game Theoretic Algorithms for Protein-DNA binding},
booktitle = {Advances in Neural Information Processing Systems 19, Proceedings
of the Twentieth Annual Conference on Neural Information Processing
Systems, Vancouver, British Columbia, Canada, December 4-7, 2006},
pages = {1081--1088},
publisher = {{MIT} Press},
year = {2006},
url = {https://proceedings.neurips.cc/paper/2006/hash/05b8caaf6ba6f4bdb68675ab8b893bda-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/Perez-BrevaOYJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/QiJ06,
author = {Yuan (Alan) Qi and
Tommi S. Jaakkola},
editor = {Bernhard Sch{\"{o}}lkopf and
John C. Platt and
Thomas Hofmann},
title = {Parameter Expanded Variational Bayesian Methods},
booktitle = {Advances in Neural Information Processing Systems 19, Proceedings
of the Twentieth Annual Conference on Neural Information Processing
Systems, Vancouver, British Columbia, Canada, December 4-7, 2006},
pages = {1097--1104},
publisher = {{MIT} Press},
year = {2006},
url = {https://proceedings.neurips.cc/paper/2006/hash/9922f5774d88b203c4ec0fdd26616899-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/QiJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/mit/06/CorduneanuJ06,
author = {Adrian Corduneanu and
Tommi S. Jaakkola},
editor = {Olivier Chapelle and
Bernhard Sch{\"{o}}lkopf and
Alexander Zien},
title = {Data-Dependent Regularization},
booktitle = {Semi-Supervised Learning},
pages = {169--190},
publisher = {The {MIT} Press},
year = {2006},
url = {https://doi.org/10.7551/mitpress/9780262033589.003.0010},
doi = {10.7551/MITPRESS/9780262033589.003.0010},
timestamp = {Mon, 22 Jul 2019 15:58:13 +0200},
biburl = {https://dblp.org/rec/books/mit/06/CorduneanuJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijait/YeangJ05,
author = {Chen{-}Hsiang Yeang and
Tommi S. Jaakkola},
title = {Time Series Analysis of Gene Expression and Location Data},
journal = {Int. J. Artif. Intell. Tools},
volume = {14},
number = {5},
pages = {755--770},
year = {2005},
url = {https://doi.org/10.1142/S0218213005002375},
doi = {10.1142/S0218213005002375},
timestamp = {Tue, 12 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijait/YeangJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tit/WainwrightJW05,
author = {Martin J. Wainwright and
Tommi S. Jaakkola and
Alan S. Willsky},
title = {A new class of upper bounds on the log partition function},
journal = {{IEEE} Trans. Inf. Theory},
volume = {51},
number = {7},
pages = {2313--2335},
year = {2005},
url = {https://doi.org/10.1109/TIT.2005.850091},
doi = {10.1109/TIT.2005.850091},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tit/WainwrightJW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tit/WainwrightJW05a,
author = {Martin J. Wainwright and
Tommi S. Jaakkola and
Alan S. Willsky},
title = {{MAP} estimation via agreement on trees: message-passing and linear
programming},
journal = {{IEEE} Trans. Inf. Theory},
volume = {51},
number = {11},
pages = {3697--3717},
year = {2005},
url = {https://doi.org/10.1109/TIT.2005.856938},
doi = {10.1109/TIT.2005.856938},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tit/WainwrightJW05a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/RosalesJ05,
author = {R{\'{o}}mer Rosales and
Tommi S. Jaakkola},
editor = {Robert G. Cowell and
Zoubin Ghahramani},
title = {Focused Inference},
booktitle = {Proceedings of the Tenth International Workshop on Artificial Intelligence
and Statistics, {AISTATS} 2005, Bridgetown, Barbados, January 6-8,
2005},
publisher = {Society for Artificial Intelligence and Statistics},
year = {2005},
url = {http://www.gatsby.ucl.ac.uk/aistats/fullpapers/164.pdf},
timestamp = {Fri, 15 May 2015 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aistats/RosalesJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YeangJ05,
author = {Chen{-}Hsiang Yeang and
Tommi S. Jaakkola},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Modeling the Combinatorial Functions of Multiple Transcription Factors},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {506--521},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_39},
doi = {10.1007/11415770\_39},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YeangJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigir/RennieJ05,
author = {Jason D. M. Rennie and
Tommi S. Jaakkola},
editor = {Ricardo A. Baeza{-}Yates and
Nivio Ziviani and
Gary Marchionini and
Alistair Moffat and
John Tait},
title = {Using term informativeness for named entity detection},
booktitle = {{SIGIR} 2005: Proceedings of the 28th Annual International {ACM} {SIGIR}
Conference on Research and Development in Information Retrieval, Salvador,
Brazil, August 15-19, 2005},
pages = {353--360},
publisher = {{ACM}},
year = {2005},
url = {https://doi.org/10.1145/1076034.1076095},
doi = {10.1145/1076034.1076095},
timestamp = {Tue, 06 Nov 2018 11:07:23 +0100},
biburl = {https://dblp.org/rec/conf/sigir/RennieJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-cs-0508070,
author = {Martin J. Wainwright and
Tommi S. Jaakkola and
Alan S. Willsky},
title = {{MAP} estimation via agreement on (hyper)trees: Message-passing and
linear programming},
journal = {CoRR},
volume = {abs/cs/0508070},
year = {2005},
url = {http://arxiv.org/abs/cs/0508070},
eprinttype = {arXiv},
eprint = {cs/0508070},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-cs-0508070.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YeangIJ04,
author = {Chen{-}Hsiang Yeang and
Trey Ideker and
Tommi S. Jaakkola},
title = {Physical Network Models},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {243--262},
year = {2004},
url = {https://doi.org/10.1089/1066527041410382},
doi = {10.1089/1066527041410382},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/YeangIJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sac/WainwrightJW04,
author = {Martin J. Wainwright and
Tommi S. Jaakkola and
Alan S. Willsky},
title = {Tree consistency and bounds on the performance of the max-product
algorithm and its generalizations},
journal = {Stat. Comput.},
volume = {14},
number = {2},
pages = {143--166},
year = {2004},
url = {https://doi.org/10.1023/B:STCO.0000021412.33763.d5},
doi = {10.1023/B:STCO.0000021412.33763.D5},
timestamp = {Wed, 25 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sac/WainwrightJW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/SachsPPNGJL04,
author = {Karen Sachs and
Omar D. Perez and
Dana Pe'er and
Garry P. Nolan and
David K. Gifford and
Tommi S. Jaakkola and
Douglas A. Lauffenburger},
title = {Analysis of Signaling Pathways in Human T-Cells Using Bayesian Network
Modeling of Single Cell Data},
booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
pages = {644},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CSB.2004.1332529},
doi = {10.1109/CSB.2004.1332529},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/SachsPPNGJL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagm/SteckJ04,
author = {Harald Steck and
Tommi S. Jaakkola},
editor = {Carl Edward Rasmussen and
Heinrich H. B{\"{u}}lthoff and
Bernhard Sch{\"{o}}lkopf and
Martin A. Giese},
title = {Predictive Discretization During Model Selection},
booktitle = {Pattern Recognition, 26th {DAGM} Symposium, August 30 - September
1, 2004, T{\"{u}}bingen, Germany, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3175},
pages = {1--8},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-28649-3\_1},
doi = {10.1007/978-3-540-28649-3\_1},
timestamp = {Mon, 26 Jun 2023 20:48:30 +0200},
biburl = {https://dblp.org/rec/conf/dagm/SteckJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/CorduneanuJ04,
author = {Adrian Corduneanu and
Tommi S. Jaakkola},
title = {Distributed Information Regularization on Graphs},
booktitle = {Advances in Neural Information Processing Systems 17 [Neural Information
Processing Systems, {NIPS} 2004, December 13-18, 2004, Vancouver,
British Columbia, Canada]},
pages = {297--304},
year = {2004},
url = {https://proceedings.neurips.cc/paper/2004/hash/75455e062929d32a333868084286bb68-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/CorduneanuJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SrebroAJ04,
author = {Nathan Srebro and
Noga Alon and
Tommi S. Jaakkola},
title = {Generalization Error Bounds for Collaborative Prediction with Low-Rank
Matrices},
booktitle = {Advances in Neural Information Processing Systems 17 [Neural Information
Processing Systems, {NIPS} 2004, December 13-18, 2004, Vancouver,
British Columbia, Canada]},
pages = {1321--1328},
year = {2004},
url = {https://proceedings.neurips.cc/paper/2004/hash/f1b0775946bc0329b35b823b86eeb5f5-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/SrebroAJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SrebroRJ04,
author = {Nathan Srebro and
Jason D. M. Rennie and
Tommi S. Jaakkola},
title = {Maximum-Margin Matrix Factorization},
booktitle = {Advances in Neural Information Processing Systems 17 [Neural Information
Processing Systems, {NIPS} 2004, December 13-18, 2004, Vancouver,
British Columbia, Canada]},
pages = {1329--1336},
year = {2004},
url = {https://proceedings.neurips.cc/paper/2004/hash/e0688d13958a19e087e123148555e4b4-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/SrebroRJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Bar-JosephDGSHJ03,
author = {Ziv Bar{-}Joseph and
Erik D. Demaine and
David K. Gifford and
Nathan Srebro and
Ang{\`{e}}le M. Hamel and
Tommi S. Jaakkola},
title = {K-ary Clustering with Optimal Leaf Ordering for Gene Expression Data},
journal = {Bioinform.},
volume = {19},
number = {9},
pages = {1070--1078},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg030},
doi = {10.1093/BIOINFORMATICS/BTG030},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Bar-JosephDGSHJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Bar-JosephGGJS03,
author = {Ziv Bar{-}Joseph and
Georg K. Gerber and
David K. Gifford and
Tommi S. Jaakkola and
Itamar Simon},
title = {Continuous Representations of Time-Series Gene Expression Data},
journal = {J. Comput. Biol.},
volume = {10},
number = {3/4},
pages = {341--356},
year = {2003},
url = {https://doi.org/10.1089/10665270360688057},
doi = {10.1089/10665270360688057},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Bar-JosephGGJS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tit/WainwrightJW03,
author = {Martin J. Wainwright and
Tommi S. Jaakkola and
Alan S. Willsky},
title = {Tree-based reparameterization framework for analysis of sum-product
and related algorithms},
journal = {{IEEE} Trans. Inf. Theory},
volume = {49},
number = {5},
pages = {1120--1146},
year = {2003},
url = {https://doi.org/10.1109/TIT.2003.810642},
doi = {10.1109/TIT.2003.810642},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tit/WainwrightJW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/WainwrightJW03,
author = {Martin J. Wainwright and
Tommi S. Jaakkola and
Alan S. Willsky},
editor = {Christopher M. Bishop and
Brendan J. Frey},
title = {Tree-reweighted belief propagation algorithms and approximate {ML}
estimation by pseudo-moment matching},
booktitle = {Proceedings of the Ninth International Workshop on Artificial Intelligence
and Statistics, {AISTATS} 2003, Key West, Florida, USA, January 3-6,
2003},
publisher = {Society for Artificial Intelligence and Statistics},
year = {2003},
url = {http://research.microsoft.com/en-us/um/cambridge/events/aistats2003/proceedings/122.pdf},
timestamp = {Fri, 15 May 2015 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aistats/WainwrightJW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/YeangJ03,
author = {Chen{-}Hsiang Yeang and
Tommi S. Jaakkola},
title = {Time Series Analysis of Gene Expression and Location Data},
booktitle = {3rd {IEEE} International Symposium on BioInformatics and BioEngineering
{(BIBE} 2003), 10-12 March 2003, Bethesda, MD, {USA}},
pages = {305--312},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/BIBE.2003.1188967},
doi = {10.1109/BIBE.2003.1188967},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/YeangJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/SrebroJ03,
author = {Nathan Srebro and
Tommi S. Jaakkola},
editor = {Tom Fawcett and
Nina Mishra},
title = {Weighted Low-Rank Approximations},
booktitle = {Machine Learning, Proceedings of the Twentieth International Conference
{(ICML} 2003), August 21-24, 2003, Washington, DC, {USA}},
pages = {720--727},
publisher = {{AAAI} Press},
year = {2003},
url = {http://www.aaai.org/Library/ICML/2003/icml03-094.php},
timestamp = {Fri, 15 May 2015 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/SrebroJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SrebroJ03,
author = {Nathan Srebro and
Tommi S. Jaakkola},
editor = {Sebastian Thrun and
Lawrence K. Saul and
Bernhard Sch{\"{o}}lkopf},
title = {Linear Dependent Dimensionality Reduction},
booktitle = {Advances in Neural Information Processing Systems 16 [Neural Information
Processing Systems, {NIPS} 2003, December 8-13, 2003, Vancouver and
Whistler, British Columbia, Canada]},
pages = {145--152},
publisher = {{MIT} Press},
year = {2003},
url = {https://proceedings.neurips.cc/paper/2003/hash/cbf8710b43df3f2c1553e649403426df-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/SrebroJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SteckJ03,
author = {Harald Steck and
Tommi S. Jaakkola},
editor = {Sebastian Thrun and
Lawrence K. Saul and
Bernhard Sch{\"{o}}lkopf},
title = {Bias-Corrected Bootstrap and Model Uncertainty},
booktitle = {Advances in Neural Information Processing Systems 16 [Neural Information
Processing Systems, {NIPS} 2003, December 8-13, 2003, Vancouver and
Whistler, British Columbia, Canada]},
pages = {521--528},
publisher = {{MIT} Press},
year = {2003},
url = {https://proceedings.neurips.cc/paper/2003/hash/2aaaddf27344ee54058548dc081c6541-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/SteckJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/MonteleoniJ03,
author = {Claire Monteleoni and
Tommi S. Jaakkola},
editor = {Sebastian Thrun and
Lawrence K. Saul and
Bernhard Sch{\"{o}}lkopf},
title = {Online Learning of Non-stationary Sequences},
booktitle = {Advances in Neural Information Processing Systems 16 [Neural Information
Processing Systems, {NIPS} 2003, December 8-13, 2003, Vancouver and
Whistler, British Columbia, Canada]},
pages = {1093--1100},
publisher = {{MIT} Press},
year = {2003},
url = {https://proceedings.neurips.cc/paper/2003/hash/feecee9f1643651799ede2740927317a-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/MonteleoniJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YeangJ03,
author = {Chen{-}Hsiang Yeang and
Tommi S. Jaakkola},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Physical network models and multi-source data integration},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {312--321},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640117},
doi = {10.1145/640075.640117},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YeangJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/CorduneanuJ03,
author = {Adrian Corduneanu and
Tommi S. Jaakkola},
editor = {Christopher Meek and
Uffe Kj{\ae}rulff},
title = {On Information Regularization},
booktitle = {{UAI} '03, Proceedings of the 19th Conference in Uncertainty in Artificial
Intelligence, Acapulco, Mexico, August 7-10 2003},
pages = {151--158},
publisher = {Morgan Kaufmann},
year = {2003},
url = {https://dslpitt.org/uai/displayArticleDetails.jsp?mmnu=1\&\#38;smnu=2\&\#38;article\_id=924\&\#38;proceeding\_id=19},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/uai/CorduneanuJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/HarteminkGJY02,
author = {Alexander J. Hartemink and
David K. Gifford and
Tommi S. Jaakkola and
Richard A. Young},
title = {Bayesian Methods for Elucidating Genetic Regulatory Networks},
journal = {{IEEE} Intell. Syst.},
volume = {17},
number = {2},
pages = {37--43},
year = {2002},
url = {https://doi.org/10.1109/MIS.2002.999218},
doi = {10.1109/MIS.2002.999218},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/expert/HarteminkGJY02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SteckJ02,
author = {Harald Steck and
Tommi S. Jaakkola},
editor = {Suzanna Becker and
Sebastian Thrun and
Klaus Obermayer},
title = {On the Dirichlet Prior and Bayesian Regularization},
booktitle = {Advances in Neural Information Processing Systems 15 [Neural Information
Processing Systems, {NIPS} 2002, December 9-14, 2002, Vancouver, British
Columbia, Canada]},
pages = {697--704},
publisher = {{MIT} Press},
year = {2002},
url = {https://proceedings.neurips.cc/paper/2002/hash/1819932ff5cf474f4f19e7c7024640c2-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/SteckJ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/WainwrightJW02,
author = {Martin J. Wainwright and
Tommi S. Jaakkola and
Alan S. Willsky},
editor = {Suzanna Becker and
Sebastian Thrun and
Klaus Obermayer},
title = {Exact {MAP} Estimates by (Hyper)tree Agreement},
booktitle = {Advances in Neural Information Processing Systems 15 [Neural Information
Processing Systems, {NIPS} 2002, December 9-14, 2002, Vancouver, British
Columbia, Canada]},
pages = {809--816},
publisher = {{MIT} Press},
year = {2002},
url = {https://proceedings.neurips.cc/paper/2002/hash/fea9c11c4ad9a395a636ed944a28b51a-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/WainwrightJW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SzummerJ02,
author = {Martin Szummer and
Tommi S. Jaakkola},
editor = {Suzanna Becker and
Sebastian Thrun and
Klaus Obermayer},
title = {Information Regularization with Partially Labeled Data},
booktitle = {Advances in Neural Information Processing Systems 15 [Neural Information
Processing Systems, {NIPS} 2002, December 9-14, 2002, Vancouver, British
Columbia, Canada]},
pages = {1025--1032},
publisher = {{MIT} Press},
year = {2002},
url = {https://proceedings.neurips.cc/paper/2002/hash/1145a30ff80745b56fb0cecf65305017-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/SzummerJ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/HarteminkGJY02,
author = {Alexander J. Hartemink and
David K. Gifford and
Tommi S. Jaakkola and
Richard A. Young},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Combining Location and Expression Data for Principled Discovery of
Genetic Regulatory Network Models},
booktitle = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002,
Lihue, Hawaii, USA, January 3-7, 2002},
pages = {437--449},
year = {2002},
url = {http://psb.stanford.edu/psb-online/proceedings/psb02/hartemink.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/HarteminkGJY02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Bar-JosephGGJS02,
author = {Ziv Bar{-}Joseph and
Georg K. Gerber and
David K. Gifford and
Tommi S. Jaakkola and
Itamar Simon},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A new approach to analyzing gene expression time series data},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {39--48},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565202},
doi = {10.1145/565196.565202},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Bar-JosephGGJS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/CorduneanuJ02,
author = {Adrian Corduneanu and
Tommi S. Jaakkola},
editor = {Adnan Darwiche and
Nir Friedman},
title = {Continuation Methods for Mixing Heterogenous Sources},
booktitle = {{UAI} '02, Proceedings of the 18th Conference in Uncertainty in Artificial
Intelligence, University of Alberta, Edmonton, Alberta, Canada, August
1-4, 2002},
pages = {111--118},
publisher = {Morgan Kaufmann},
year = {2002},
url = {https://dslpitt.org/uai/displayArticleDetails.jsp?mmnu=1\&\#38;smnu=2\&\#38;article\_id=851\&\#38;proceeding\_id=18},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/uai/CorduneanuJ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/SteckJ02,
author = {Harald Steck and
Tommi S. Jaakkola},
editor = {Adnan Darwiche and
Nir Friedman},
title = {Unsupervised Active Learning in Large Domains},
booktitle = {{UAI} '02, Proceedings of the 18th Conference in Uncertainty in Artificial
Intelligence, University of Alberta, Edmonton, Alberta, Canada, August
1-4, 2002},
pages = {469--476},
publisher = {Morgan Kaufmann},
year = {2002},
url = {https://dslpitt.org/uai/displayArticleDetails.jsp?mmnu=1\&\#38;smnu=2\&\#38;article\_id=893\&\#38;proceeding\_id=18},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/uai/SteckJ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/WainwrightJW02,
author = {Martin J. Wainwright and
Tommi S. Jaakkola and
Alan S. Willsky},
editor = {Adnan Darwiche and
Nir Friedman},
title = {A New Class of upper Bounds on the Log Partition Function},
booktitle = {{UAI} '02, Proceedings of the 18th Conference in Uncertainty in Artificial
Intelligence, University of Alberta, Edmonton, Alberta, Canada, August
1-4, 2002},
pages = {536--543},
publisher = {Morgan Kaufmann},
year = {2002},
url = {https://dslpitt.org/uai/displayArticleDetails.jsp?mmnu=1\&\#38;smnu=2\&\#38;article\_id=901\&\#38;proceeding\_id=18},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/uai/WainwrightJW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Bar-JosephDGHJS02,
author = {Ziv Bar{-}Joseph and
Erik D. Demaine and
David K. Gifford and
Ang{\`{e}}le M. Hamel and
Tommi S. Jaakkola and
Nathan Srebro},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {K-ary Clustering with Optimal Leaf Ordering for Gene Expression Data},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {506--520},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_39},
doi = {10.1007/3-540-45784-4\_39},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Bar-JosephDGHJS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/Bar-JosephGJ01,
author = {Ziv Bar{-}Joseph and
David K. Gifford and
Tommi S. Jaakkola},
title = {Fast optimal leaf ordering for hierarchical clustering},
booktitle = {Proceedings of the Ninth International Conference on Intelligent Systems
for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark},
pages = {22--29},
year = {2001},
timestamp = {Fri, 15 May 2015 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/Bar-JosephGJ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/JaakkolaS01,
author = {Tommi S. Jaakkola and
Hava T. Siegelmann},
editor = {Thomas G. Dietterich and
Suzanna Becker and
Zoubin Ghahramani},
title = {Active Information Retrieval},
booktitle = {Advances in Neural Information Processing Systems 14 [Neural Information
Processing Systems: Natural and Synthetic, {NIPS} 2001, December 3-8,
2001, Vancouver, British Columbia, Canada]},
pages = {777--784},
publisher = {{MIT} Press},
year = {2001},
url = {https://proceedings.neurips.cc/paper/2001/hash/5a7f963e5e0504740c3a6b10bb6d4fa5-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/JaakkolaS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SzummerJ01,
author = {Martin Szummer and
Tommi S. Jaakkola},
editor = {Thomas G. Dietterich and
Suzanna Becker and
Zoubin Ghahramani},
title = {Partially labeled classification with Markov random walks},
booktitle = {Advances in Neural Information Processing Systems 14 [Neural Information
Processing Systems: Natural and Synthetic, {NIPS} 2001, December 3-8,
2001, Vancouver, British Columbia, Canada]},
pages = {945--952},
publisher = {{MIT} Press},
year = {2001},
url = {https://proceedings.neurips.cc/paper/2001/hash/a82d922b133be19c1171534e6594f754-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/SzummerJ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/WainwrightJW01,
author = {Martin J. Wainwright and
Tommi S. Jaakkola and
Alan S. Willsky},
editor = {Thomas G. Dietterich and
Suzanna Becker and
Zoubin Ghahramani},
title = {Tree-based reparameterization for approximate inference on loopy graphs},
booktitle = {Advances in Neural Information Processing Systems 14 [Neural Information
Processing Systems: Natural and Synthetic, {NIPS} 2001, December 3-8,
2001, Vancouver, British Columbia, Canada]},
pages = {1001--1008},
publisher = {{MIT} Press},
year = {2001},
url = {https://proceedings.neurips.cc/paper/2001/hash/9185f3ec501c674c7c788464a36e7fb3-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/WainwrightJW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/HarteminkGJY01,
author = {Alexander J. Hartemink and
David K. Gifford and
Tommi S. Jaakkola and
Richard A. Young},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Using Graphical Models and Genomic Expression Data to Statistically
Validate Models of Genetic Regulatory Networks},
booktitle = {Proceedings of the 6th Pacific Symposium on Biocomputing, {PSB} 2001,
Hawaii, USA, January 3-7, 2001},
pages = {422--433},
year = {2001},
url = {http://psb.stanford.edu/psb-online/proceedings/psb01/hartemink.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/HarteminkGJY01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/aistats/2001,
editor = {Thomas S. Richardson and
Tommi S. Jaakkola},
title = {Proceedings of the Eighth International Workshop on Artificial Intelligence
and Statistics, {AISTATS} 2001, Key West, Florida, USA, January 4-7,
2001},
publisher = {Society for Artificial Intelligence and Statistics},
year = {2001},
url = {http://www.gatsby.ucl.ac.uk/aistats/aistats2001/},
timestamp = {Thu, 21 Jun 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aistats/2001.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/JaakkolaDH00,
author = {Tommi S. Jaakkola and
Mark Diekhans and
David Haussler},
title = {A Discriminative Framework for Detecting Remote Protein Homologies},
journal = {J. Comput. Biol.},
volume = {7},
number = {1-2},
pages = {95--114},
year = {2000},
url = {https://doi.org/10.1089/10665270050081405},
doi = {10.1089/10665270050081405},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/JaakkolaDH00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ml/SinghJLS00,
author = {Satinder Singh and
Tommi S. Jaakkola and
Michael L. Littman and
Csaba Szepesv{\'{a}}ri},
title = {Convergence Results for Single-Step On-Policy Reinforcement-Learning
Algorithms},
journal = {Mach. Learn.},
volume = {38},
number = {3},
pages = {287--308},
year = {2000},
url = {https://doi.org/10.1023/A:1007678930559},
doi = {10.1023/A:1007678930559},
timestamp = {Tue, 19 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ml/SinghJLS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sac/JaakkolaJ00,
author = {Tommi S. Jaakkola and
Michael I. Jordan},
title = {Bayesian parameter estimation via variational methods},
journal = {Stat. Comput.},
volume = {10},
number = {1},
pages = {25--37},
year = {2000},
url = {https://doi.org/10.1023/A:1008932416310},
doi = {10.1023/A:1008932416310},
timestamp = {Wed, 25 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sac/JaakkolaJ00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/FreyPJM00,
author = {Brendan J. Frey and
Relu Patrascu and
Tommi S. Jaakkola and
Jodi Moran},
editor = {Todd K. Leen and
Thomas G. Dietterich and
Volker Tresp},
title = {Sequentially Fitting "Inclusive" Trees for Inference in
Noisy-OR Networks},
booktitle = {Advances in Neural Information Processing Systems 13, Papers from
Neural Information Processing Systems {(NIPS)} 2000, Denver, CO, {USA}},
pages = {493--499},
publisher = {{MIT} Press},
year = {2000},
url = {https://proceedings.neurips.cc/paper/2000/hash/f0bbac6fa079f1e00b2c14c1d3c6ccf0-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/FreyPJM00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SzummerJ00,
author = {Martin Szummer and
Tommi S. Jaakkola},
editor = {Todd K. Leen and
Thomas G. Dietterich and
Volker Tresp},
title = {Kernel Expansions with Unlabeled Examples},
booktitle = {Advances in Neural Information Processing Systems 13, Papers from
Neural Information Processing Systems {(NIPS)} 2000, Denver, CO, {USA}},
pages = {626--632},
publisher = {{MIT} Press},
year = {2000},
url = {https://proceedings.neurips.cc/paper/2000/hash/5bce843dd76db8c939d5323dd3e54ec9-Abstract.html},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/SzummerJ00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/JebaraJ00,
author = {Tony Jebara and
Tommi S. Jaakkola},
editor = {Craig Boutilier and
Mois{\'{e}}s Goldszmidt},
title = {Feature Selection and Dualities in Maximum Entropy Discrimination},
booktitle = {{UAI} '00: Proceedings of the 16th Conference in Uncertainty in Artificial
Intelligence, Stanford University, Stanford, California, USA, June
30 - July 3, 2000},
pages = {291--300},
publisher = {Morgan Kaufmann},
year = {2000},
url = {https://dslpitt.org/uai/displayArticleDetails.jsp?mmnu=1\&\#38;smnu=2\&\#38;article\_id=34\&\#38;proceeding\_id=16},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/uai/JebaraJ00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/MeilaJ00,
author = {Marina Meila and
Tommi S. Jaakkola},
editor = {Craig Boutilier and
Mois{\'{e}}s Goldszmidt},
title = {Tractable Bayesian Learning of Tree Belief Networks},
booktitle = {{UAI} '00: Proceedings of the 16th Conference in Uncertainty in Artificial
Intelligence, Stanford University, Stanford, California, USA, June
30 - July 3, 2000},
pages = {380--388},
publisher = {Morgan Kaufmann},
year = {2000},
url = {https://dslpitt.org/uai/displayArticleDetails.jsp?mmnu=1\&\#38;smnu=2\&\#38;article\_id=45\&\#38;proceeding\_id=16},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/uai/MeilaJ00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jair/JaakkolaJ99,
author = {Tommi S. Jaakkola and
Michael I. Jordan},
title = {Variational Probabilistic Inference and the {QMR-DT} Network},
journal = {J. Artif. Intell. Res.},
volume = {10},
pages = {291--322},
year = {1999},
url = {https://doi.org/10.1613/jair.583},
doi = {10.1613/JAIR.583},
timestamp = {Mon, 21 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jair/JaakkolaJ99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ml/JordanGJS99,
author = {Michael I. Jordan and
Zoubin Ghahramani and
Tommi S. Jaakkola and
Lawrence K. Saul},
title = {An Introduction to Variational Methods for Graphical Models},
journal = {Mach. Learn.},
volume = {37},
number = {2},
pages = {183--233},
year = {1999},
url = {https://doi.org/10.1023/A:1007665907178},
doi = {10.1023/A:1007665907178},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ml/JordanGJS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/JaakkolaH99,
author = {Tommi S. Jaakkola and
David Haussler},
editor = {David Heckerman and
Joe Whittaker},
title = {Probabilistic kernel regression models},
booktitle = {Proceedings of the Seventh International Workshop on Artificial Intelligence
and Statistics, {AISTATS} 1999, Fort Lauderdale, Florida, USA, January
3-6, 1999},
publisher = {Society for Artificial Intelligence and Statistics},
year = {1999},
url = {http://uncertainty99.microsoft.com/jaakkola.htm},
timestamp = {Tue, 19 Jun 2018 18:30:12 +0200},
biburl = {https://dblp.org/rec/conf/aistats/JaakkolaH99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/JaakkolaDH99,
author = {Tommi S. Jaakkola and
Mark Diekhans and
David Haussler},
editor = {Thomas Lengauer and
Reinhard Schneider and
Peer Bork and
Douglas L. Brutlag and
Janice I. Glasgow and
Hans{-}Werner Mewes and
Ralf Zimmer},
title = {Using the Fisher Kernel Method to Detect Remote Protein Homologies},
booktitle = {Proceedings of the Seventh International Conference on Intelligent
Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany},
pages = {149--158},
publisher = {{AAAI}},
year = {1999},
url = {http://www.aaai.org/Library/ISMB/1999/ismb99-018.php},
timestamp = {Fri, 15 May 2015 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/JaakkolaDH99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/JaakkolaMJ99,
author = {Tommi S. Jaakkola and
Marina Meila and
Tony Jebara},
editor = {Sara A. Solla and
Todd K. Leen and
Klaus{-}Robert M{\"{u}}ller},
title = {Maximum Entropy Discrimination},
booktitle = {Advances in Neural Information Processing Systems 12, {[NIPS} Conference,
Denver, Colorado, USA, November 29 - December 4, 1999]},
pages = {470--476},
publisher = {The {MIT} Press},
year = {1999},
url = {http://papers.nips.cc/paper/1733-maximum-entropy-discrimination},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/JaakkolaMJ99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/JaakkolaH98,
author = {Tommi S. Jaakkola and
David Haussler},
editor = {Michael J. Kearns and
Sara A. Solla and
David A. Cohn},
title = {Exploiting Generative Models in Discriminative Classifiers},
booktitle = {Advances in Neural Information Processing Systems 11, {[NIPS} Conference,
Denver, Colorado, USA, November 30 - December 5, 1998]},
pages = {487--493},
publisher = {The {MIT} Press},
year = {1998},
url = {http://papers.nips.cc/paper/1520-exploiting-generative-models-in-discriminative-classifiers},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/JaakkolaH98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/12/JordanGJS98,
author = {Michael I. Jordan and
Zoubin Ghahramani and
Tommi S. Jaakkola and
Lawrence K. Saul},
editor = {Michael I. Jordan},
title = {An Introduction to Variational Methods for Graphical Models},
booktitle = {Learning in Graphical Models},
series = {{NATO} {ASI} Series},
volume = {89},
pages = {105--161},
publisher = {Springer Netherlands},
year = {1998},
url = {https://doi.org/10.1007/978-94-011-5014-9\_5},
doi = {10.1007/978-94-011-5014-9\_5},
timestamp = {Wed, 31 Jul 2019 13:30:26 +0200},
biburl = {https://dblp.org/rec/books/sp/12/JordanGJS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/12/JaakkolaJ98,
author = {Tommi S. Jaakkola and
Michael I. Jordan},
editor = {Michael I. Jordan},
title = {Improving the Mean Field Approximation Via the Use of Mixture Distributions},
booktitle = {Learning in Graphical Models},
series = {{NATO} {ASI} Series},
volume = {89},
pages = {163--173},
publisher = {Springer Netherlands},
year = {1998},
url = {https://doi.org/10.1007/978-94-011-5014-9\_6},
doi = {10.1007/978-94-011-5014-9\_6},
timestamp = {Wed, 31 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/12/JaakkolaJ98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/BishopLJJ97,
author = {Christopher M. Bishop and
Neil D. Lawrence and
Tommi S. Jaakkola and
Michael I. Jordan},
editor = {Michael I. Jordan and
Michael J. Kearns and
Sara A. Solla},
title = {Approximating Posterior Distributions in Belief Networks Using Mixtures},
booktitle = {Advances in Neural Information Processing Systems 10, {[NIPS} Conference,
Denver, Colorado, USA, 1997]},
pages = {416--422},
publisher = {The {MIT} Press},
year = {1997},
url = {http://papers.nips.cc/paper/1392-approximating-posterior-distributions-in-belief-networks-using-mixtures},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/BishopLJJ97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jair/SaulJJ96,
author = {Lawrence K. Saul and
Tommi S. Jaakkola and
Michael I. Jordan},
title = {Mean Field Theory for Sigmoid Belief Networks},
journal = {J. Artif. Intell. Res.},
volume = {4},
pages = {61--76},
year = {1996},
url = {https://doi.org/10.1613/jair.251},
doi = {10.1613/JAIR.251},
timestamp = {Mon, 21 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jair/SaulJJ96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/JaakkolaJ96,
author = {Tommi S. Jaakkola and
Michael I. Jordan},
editor = {Michael Mozer and
Michael I. Jordan and
Thomas Petsche},
title = {Recursive Algorithms for Approximating Probabilities in Graphical
Models},
booktitle = {Advances in Neural Information Processing Systems 9, NIPS, Denver,
CO, USA, December 2-5, 1996},
pages = {487--493},
publisher = {{MIT} Press},
year = {1996},
url = {http://papers.nips.cc/paper/1316-recursive-algorithms-for-approximating-probabilities-in-graphical-models},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/JaakkolaJ96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/JaakkolaJ96,
author = {Tommi S. Jaakkola and
Michael I. Jordan},
editor = {Eric Horvitz and
Finn Verner Jensen},
title = {Computing upper and lower bounds on likelihoods in intractable networks},
booktitle = {{UAI} '96: Proceedings of the Twelfth Annual Conference on Uncertainty
in Artificial Intelligence, Reed College, Portland, Oregon, USA, August
1-4, 1996},
pages = {340--348},
publisher = {Morgan Kaufmann},
year = {1996},
url = {https://dslpitt.org/uai/displayArticleDetails.jsp?mmnu=1\&\#38;smnu=2\&\#38;article\_id=385\&\#38;proceeding\_id=12},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/uai/JaakkolaJ96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/cs-AI-9603102,
author = {Lawrence K. Saul and
Tommi S. Jaakkola and
Michael I. Jordan},
title = {Mean Field Theory for Sigmoid Belief Networks},
journal = {CoRR},
volume = {cs.AI/9603102},
year = {1996},
url = {https://arxiv.org/abs/cs/9603102},
timestamp = {Fri, 10 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/cs-AI-9603102.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/JaakkolaSJ95,
author = {Tommi S. Jaakkola and
Lawrence K. Saul and
Michael I. Jordan},
editor = {David S. Touretzky and
Michael Mozer and
Michael E. Hasselmo},
title = {Fast Learning by Bounding Likelihoods in Sigmoid Type Belief Networks},
booktitle = {Advances in Neural Information Processing Systems 8, NIPS, Denver,
CO, USA, November 27-30, 1995},
pages = {528--534},
publisher = {{MIT} Press},
year = {1995},
url = {http://papers.nips.cc/paper/1111-fast-learning-by-bounding-likelihoods-in-sigmoid-type-belief-networks},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/JaakkolaSJ95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neco/JaakkolaJS94,
author = {Tommi S. Jaakkola and
Michael I. Jordan and
Satinder P. Singh},
title = {On the Convergence of Stochastic Iterative Dynamic Programming Algorithms},
journal = {Neural Comput.},
volume = {6},
number = {6},
pages = {1185--1201},
year = {1994},
url = {https://doi.org/10.1162/neco.1994.6.6.1185},
doi = {10.1162/NECO.1994.6.6.1185},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neco/JaakkolaJS94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/SinghJJ94,
author = {Satinder P. Singh and
Tommi S. Jaakkola and
Michael I. Jordan},
editor = {William W. Cohen and
Haym Hirsh},
title = {Learning Without State-Estimation in Partially Observable Markovian
Decision Processes},
booktitle = {Machine Learning, Proceedings of the Eleventh International Conference,
Rutgers University, New Brunswick, NJ, USA, July 10-13, 1994},
pages = {284--292},
publisher = {Morgan Kaufmann},
year = {1994},
url = {https://doi.org/10.1016/b978-1-55860-335-6.50042-8},
doi = {10.1016/B978-1-55860-335-6.50042-8},
timestamp = {Mon, 24 Jun 2019 13:56:31 +0200},
biburl = {https://dblp.org/rec/conf/icml/SinghJJ94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/JaakkolaSJ94,
author = {Tommi S. Jaakkola and
Satinder Singh and
Michael I. Jordan},
editor = {Gerald Tesauro and
David S. Touretzky and
Todd K. Leen},
title = {Reinforcement Learning Algorithm for Partially Observable Markov Decision
Problems},
booktitle = {Advances in Neural Information Processing Systems 7, {[NIPS} Conference,
Denver, Colorado, USA, 1994]},
pages = {345--352},
publisher = {{MIT} Press},
year = {1994},
url = {http://papers.nips.cc/paper/951-reinforcement-learning-algorithm-for-partially-observable-markov-decision-problems},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/JaakkolaSJ94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SinghJJ94,
author = {Satinder Singh and
Tommi S. Jaakkola and
Michael I. Jordan},
editor = {Gerald Tesauro and
David S. Touretzky and
Todd K. Leen},
title = {Reinforcement Learning with Soft State Aggregation},
booktitle = {Advances in Neural Information Processing Systems 7, {[NIPS} Conference,
Denver, Colorado, USA, 1994]},
pages = {361--368},
publisher = {{MIT} Press},
year = {1994},
url = {http://papers.nips.cc/paper/981-reinforcement-learning-with-soft-state-aggregation},
timestamp = {Tue, 19 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nips/SinghJJ94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/JaakkolaJS93,
author = {Tommi S. Jaakkola and
Michael I. Jordan and
Satinder Singh},
editor = {Jack D. Cowan and
Gerald Tesauro and
Joshua Alspector},
title = {Convergence of Stochastic Iterative Dynamic Programming Algorithms},
booktitle = {Advances in Neural Information Processing Systems 6, [7th {NIPS} Conference,
Denver, Colorado, USA, 1993]},
pages = {703--710},
publisher = {Morgan Kaufmann},
year = {1993},
url = {http://papers.nips.cc/paper/764-convergence-of-stochastic-iterative-dynamic-programming-algorithms},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/JaakkolaJS93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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