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ORCIDBibTeX records: Tadashi Imanishi
@article{DBLP:journals/bioinformatics/KryukovTNI19,
author = {Kirill Kryukov and
Mahoko Ueda Takahashi and
So Nakagawa and
Tadashi Imanishi},
title = {Nucleotide Archival Format {(NAF)} enables efficient lossless reference-free
compression of {DNA} sequences},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3826--3828},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz144},
doi = {10.1093/BIOINFORMATICS/BTZ144},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KryukovTNI19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NagaiTI15,
author = {Yoko Nagai and
Yasuko Takahashi and
Tadashi Imanishi},
title = {VaDE: a manually curated database of reproducible associations between
various traits and human genomic polymorphisms},
journal = {Nucleic Acids Res.},
volume = {43},
number = {Database-Issue},
pages = {868--872},
year = {2015},
url = {https://doi.org/10.1093/nar/gku1037},
doi = {10.1093/NAR/GKU1037},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NagaiTI15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/NagaiI13,
author = {Yoko Nagai and
Tadashi Imanishi},
title = {RAvariome: a genetic risk variants database for rheumatoid arthritis
based on assessment of reproducibility between or within human populations},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bat073},
doi = {10.1093/DATABASE/BAT073},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/NagaiI13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TakedaYMNSHOHGI13,
author = {Jun{-}ichi Takeda and
Chisato Yamasaki and
Katsuhiko Murakami and
Yoko Nagai and
Miho Sera and
Yuichiro Hara and
Nobuo Obi and
Takuya Habara and
Takashi Gojobori and
Tadashi Imanishi},
title = {H-InvDB in 2013: an omics study platform for human functional gene
and transcript discovery},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {915--919},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1245},
doi = {10.1093/NAR/GKS1245},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TakedaYMNSHOHGI13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KikugawaNMSSAKI12,
author = {Shingo Kikugawa and
Kensaku Nishikata and
Katsuhiko Murakami and
Yoshiharu Sato and
Mami Suzuki and
Md. Altaf{-}Ul{-}Amin and
Shigehiko Kanaya and
Tadashi Imanishi},
title = {PCDq: human protein complex database with quality index which summarizes
different levels of evidences of protein complexes predicted from
H-Invitational protein-protein interactions integrative dataset},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-2}},
pages = {S7},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S2-S7},
doi = {10.1186/1752-0509-6-S2-S7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KikugawaNMSSAKI12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11,
author = {Pascale Gaudet and
Amos Bairoch and
Dawn Field and
Susanna{-}Assunta Sansone and
Chris F. Taylor and
Teresa K. Attwood and
Alex Bateman and
Judith A. Blake and
Carol J. Bult and
J. Michael Cherry and
Rex L. Chisholm and
Guy Cochrane and
Charles E. Cook and
Janan T. Eppig and
Michael Y. Galperin and
Robert Gentleman and
Carole A. Goble and
Takashi Gojobori and
John M. Hancock and
Douglas G. Howe and
Tadashi Imanishi and
Janet Kelso and
David Landsman and
Suzanna E. Lewis and
Ilene Karsch{-}Mizrachi and
Sandra E. Orchard and
B. F. Francis Ouellette and
Shoba Ranganathan and
Lorna J. Richardson and
Philippe Rocca{-}Serra and
Paul N. Schofield and
Damian Smedley and
Christopher Southan and
Tin Wee Tan and
Tatiana A. Tatusova and
Patricia L. Whetzel and
Owen White and
Chisato Yamasaki},
title = {Towards BioDBcore: a community-defined information specification for
biological databases},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/baq027},
doi = {10.1093/DATABASE/BAQ027},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11,
author = {Pascale Gaudet and
Amos Bairoch and
Dawn Field and
Susanna{-}Assunta Sansone and
Chris F. Taylor and
Teresa K. Attwood and
Alex Bateman and
Judith A. Blake and
Carol J. Bult and
J. Michael Cherry and
Rex L. Chisholm and
Guy Cochrane and
Charles E. Cook and
Janan T. Eppig and
Michael Y. Galperin and
Robert Gentleman and
Carole A. Goble and
Takashi Gojobori and
John M. Hancock and
Douglas G. Howe and
Tadashi Imanishi and
Janet Kelso and
David Landsman and
Suzanna E. Lewis and
Ilene Karsch{-}Mizrachi and
Sandra E. Orchard and
B. F. Francis Ouellette and
Shoba Ranganathan and
Lorna J. Richardson and
Philippe Rocca{-}Serra and
Paul N. Schofield and
Damian Smedley and
Christopher Southan and
Tin Wee Tan and
Tatiana A. Tatusova and
Patricia L. Whetzel and
Owen White and
Chisato Yamasaki},
title = {Towards BioDBcore: a community-defined information specification for
biological databases},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {7--10},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1173},
doi = {10.1093/NAR/GKQ1173},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EndoUYMHSYOTNNNYSYSYITI11,
author = {Toshinori Endo and
Keisuke Ueno and
Kouki Yonezawa and
Katsuhiko Mineta and
Kohji Hotta and
Yutaka Satou and
Lixy Yamada and
Michio Ogasawara and
Hiroki Takahashi and
Ayako Nakajima and
Mia Nakachi and
Mamoru Nomura and
Junko Yaguchi and
Yasunori Sasakura and
Chisato Yamasaki and
Miho Sera and
Akiyasu C. Yoshizawa and
Tadashi Imanishi and
Hisaaki Taniguchi and
Kazuo Inaba},
title = {{CIPRO} 2.5: \emph{Ciona intestinalis} protein database, a unique
integrated repository of large-scale omics data, bioinformatic analyses
and curated annotation, with user rating and reviewing functionality},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {807--814},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1144},
doi = {10.1093/NAR/GKQ1144},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/EndoUYMHSYOTNNNYSYSYITI11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TakedaSSSGIS10,
author = {Jun{-}ichi Takeda and
Yutaka Suzuki and
Ryuichi Sakate and
Yoshiharu Sato and
Takashi Gojobori and
Tadashi Imanishi and
Sumio Sugano},
title = {{H-DBAS:} human-transcriptome database for alternative splicing: update
2010},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {86--90},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp984},
doi = {10.1093/NAR/GKP984},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TakedaSSSGIS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YamasakiMTSNSHNTMIG10,
author = {Chisato Yamasaki and
Katsuhiko Murakami and
Jun{-}ichi Takeda and
Yoshiharu Sato and
Akiko Ogura Noda and
Ryuichi Sakate and
Takuya Habara and
Hajime Nakaoka and
Fusano Todokoro and
Akihiro Matsuya and
Tadashi Imanishi and
Takashi Gojobori},
title = {H-InvDB in 2009: extended database and data mining resources for human
genes and transcripts},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {626--632},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp1020},
doi = {10.1093/NAR/GKP1020},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YamasakiMTSNSHNTMIG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KawaharaSMMSZGII09,
author = {Yoshihiro Kawahara and
Ryuichi Sakate and
Akihiro Matsuya and
Katsuhiko Murakami and
Yoshiharu Sato and
Hao Zhang and
Takashi Gojobori and
Takeshi Itoh and
Tadashi Imanishi},
title = {G-compass: a web-based comparative genome browser between human and
other vertebrate genomes},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3321--3322},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp594},
doi = {10.1093/BIOINFORMATICS/BTP594},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KawaharaSMMSZGII09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShimadaMHSGYYIG09,
author = {Makoto K. Shimada and
Ryuzou Matsumoto and
Yosuke Hayakawa and
Ryoko Sanbonmatsu and
Craig Gough and
Yumi Yamaguchi{-}Kabata and
Chisato Yamasaki and
Tadashi Imanishi and
Takashi Gojobori},
title = {VarySysDB: a human genetic polymorphism database based on all H-InvDB
transcripts},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {810--815},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn798},
doi = {10.1093/NAR/GKN798},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShimadaMHSGYYIG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ImanishiN09,
author = {Tadashi Imanishi and
Hajime Nakaoka},
title = {Hyperlink Management System and {ID} Converter System: enabling maintenance-free
hyperlinks among major biological databases},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Web-Server-Issue},
pages = {17--22},
year = {2009},
url = {https://doi.org/10.1093/nar/gkp355},
doi = {10.1093/NAR/GKP355},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ImanishiN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MatsuyaSKKSFYHNTYEOMISHHHISHJKKMNSSSTTGII08,
author = {Akihiro Matsuya and
Ryuichi Sakate and
Yoshihiro Kawahara and
Kanako O. Koyanagi and
Yoshiharu Sato and
Yasuyuki Fujii and
Chisato Yamasaki and
Takuya Habara and
Hajime Nakaoka and
Fusano Todokoro and
Kaori Yamaguchi and
Toshinori Endo and
Satoshi Ota and
Wojciech Makalowski and
Kazuho Ikeo and
Yoshiyuki Suzuki and
Kousuke Hanada and
Katsuyuki Hashimoto and
Momoki Hirai and
Hisakazu Iwama and
Naruya Saitou and
Aiko T. Hiraki and
Lihua Jin and
Yayoi Kaneko and
Masako Kanno and
Katsuhiko Murakami and
Akiko Ogura Noda and
Naomi Saichi and
Ryoko Sanbonmatsu and
Mami Suzuki and
Jun{-}ichi Takeda and
Masayuki Tanaka and
Takashi Gojobori and
Tadashi Imanishi and
Takeshi Itoh},
title = {Evola: Ortholog database of all human genes in H-InvDB with manual
curation of phylogenetic trees},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {787--792},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm878},
doi = {10.1093/NAR/GKM878},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MatsuyaSKKSFYHNTYEOMISHHHISHJKKMNSSSTTGII08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ChunYSTHIGKTT08,
author = {Hong{-}Woo Chun and
Chisato Yamasaki and
Naomi Saichi and
Masayuki Tanaka and
Teruyoshi Hishiki and
Tadashi Imanishi and
Takashi Gojobori and
Jin{-}Dong Kim and
Jun'ichi Tsujii and
Toshihisa Takagi},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Bretonnel Cohen and
John Pestian and
Jun'ichi Tsujii and
Bonnie L. Webber},
title = {Prediction of Protein Sub-cellular Localization using Information
from Texts and Sequences},
booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural
Language Processing, BioNLP 2008, Columbus, Ohio, USA, June 19, 2008},
pages = {90--91},
publisher = {Association for Computational Linguistics},
year = {2008},
url = {https://aclanthology.org/W08-0613/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/ChunYSTHIGKTT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TakedaSNKSGI07,
author = {Jun{-}ichi Takeda and
Yutaka Suzuki and
Mitsuteru Nakao and
Tsuyoshi Kuroda and
Sumio Sugano and
Takashi Gojobori and
Tadashi Imanishi},
title = {{H-DBAS:} Alternative splicing database of completely sequenced and
manually annotated full-length cDNAs based on H-Invitational},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {104--109},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl854},
doi = {10.1093/NAR/GKL854},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TakedaSNKSGI07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OhyanagiTSSYHFANIIIGS06,
author = {Hajime Ohyanagi and
Tsuyoshi Tanaka and
Hiroaki Sakai and
Yasumasa Shigemoto and
Kaori Yamaguchi and
Takuya Habara and
Yasuyuki Fujii and
Baltazar A. Antonio and
Yoshiaki Nagamura and
Tadashi Imanishi and
Kazuho Ikeo and
Takeshi Itoh and
Takashi Gojobori and
Takuji Sasaki},
title = {The Rice Annotation Project Database {(RAP-DB):} hub for \emph{Oryza
sativa} ssp. \emph{japonica} genome information},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {741--744},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj094},
doi = {10.1093/NAR/GKJ094},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OhyanagiTSSYHFANIIIGS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YamasakiKTIOTIGI06,
author = {Chisato Yamasaki and
Hiroaki Kawashima and
Fusano Todokoro and
Yasuhiro Imamizu and
Makoto Ogawa and
Motohiko Tanino and
Takeshi Itoh and
Takashi Gojobori and
Tadashi Imanishi},
title = {{TACT:} Transcriptome Auto-annotation Conducting Tool of H-InvDB},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Web-Server-Issue},
pages = {345--349},
year = {2006},
url = {https://doi.org/10.1093/nar/gkl283},
doi = {10.1093/NAR/GKL283},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YamasakiKTIOTIGI06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TaninoDTHOMKIWSIGEHSKIIGAHO05,
author = {Motohiko Tanino and
Marie{-}Anne Debily and
Takuro Tamura and
Teruyoshi Hishiki and
Osamu Ogasawara and
Katsuji Murakawa and
Shoko Kawamoto and
Kouichi Itoh and
Shinya Watanabe and
Sandro Jos{\'{e}} de Souza and
Sandrine Imbeaud and
Esther Graudens and
Eric Eveno and
Phillip Hilton and
Yukio Sudo and
Janet Kelso and
Kazuho Ikeo and
Tadashi Imanishi and
Takashi Gojobori and
Charles Auffray and
Winston Hide and
Kousaku Okubo},
title = {The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative
display of human gene expression across disparate technologies and
platforms},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {567--572},
year = {2005},
url = {https://doi.org/10.1093/nar/gki104},
doi = {10.1093/NAR/GKI104},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TaninoDTHOMKIWSIGEHSKIIGAHO05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TatenoIMFSSG03,
author = {Yoshio Tateno and
Tadashi Imanishi and
Satoru Miyazaki and
Kaoru Fukami{-}Kobayashi and
Naruya Saitou and
Hideaki Sugawara and
Takashi Gojobori},
title = {{DNA} Data Bank of Japan {(DDBJ)} for genome scale research in life
science},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {27--30},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.27},
doi = {10.1093/NAR/30.1.27},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TatenoIMFSSG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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