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BibTeX records: Eric P. Hoffman
@article{DBLP:journals/bioinformatics/TianZHCZSXHW15, author = {Ye Tian and Bai Zhang and Eric P. Hoffman and Robert Clarke and Zhen Zhang and Ie{-}Ming Shih and Jianhua Xuan and David M. Herrington and Yue Joseph Wang}, title = {{KDDN:} an open-source Cytoscape app for constructing differential dependency networks with significant rewiring}, journal = {Bioinform.}, volume = {31}, number = {2}, pages = {287--289}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btu632}, doi = {10.1093/BIOINFORMATICS/BTU632}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TianZHCZSXHW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TianZHCZSXHW14, author = {Ye Tian and Bai Zhang and Eric P. Hoffman and Robert Clarke and Zhen Zhang and Ie{-}Ming Shih and Jianhua Xuan and David M. Herrington and Yue Joseph Wang}, title = {Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {87}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0087-1}, doi = {10.1186/S12918-014-0087-1}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/TianZHCZSXHW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/globalsip/WangBWMHY14, author = {Yinxue Wang and Luca Bello and Yue Wang and Craig M. McDonald and Eric P. Hoffman and Guoqiang Yu}, title = {Predicting age at loss of ambulation in Duchenne muscular dystrophy with deep phenotypic measures}, booktitle = {2014 {IEEE} Global Conference on Signal and Information Processing, GlobalSIP 2014, Atlanta, GA, USA, December 3-5, 2014}, pages = {1344--1347}, publisher = {{IEEE}}, year = {2014}, url = {https://doi.org/10.1109/GlobalSIP.2014.7032343}, doi = {10.1109/GLOBALSIP.2014.7032343}, timestamp = {Tue, 21 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/globalsip/WangBWMHY14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jmlr/WangMCMCHXW13, author = {Niya Wang and Fan Meng and Li Chen and Subha Madhavan and Robert Clarke and Eric P. Hoffman and Jianhua Xuan and Yue Joseph Wang}, title = {The {CAM} software for nonnegative blind source separation in R-Java}, journal = {J. Mach. Learn. Res.}, volume = {14}, number = {1}, pages = {2899--2903}, year = {2013}, url = {https://dl.acm.org/doi/10.5555/2567709.2567753}, doi = {10.5555/2567709.2567753}, timestamp = {Thu, 02 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jmlr/WangMCMCHXW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijon/WangHXWH12, author = {Chen Wang and Sook S. Ha and Jianhua Xuan and Yue Joseph Wang and Eric P. Hoffman}, title = {Computational analysis of muscular dystrophy sub-types using a novel integrative scheme}, journal = {Neurocomputing}, volume = {92}, pages = {9--17}, year = {2012}, url = {https://doi.org/10.1016/j.neucom.2011.08.037}, doi = {10.1016/J.NEUCOM.2011.08.037}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijon/WangHXWH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YuLHSCHMXW11, author = {Guoqiang Yu and Huai Li and Sook S. Ha and Ie{-}Ming Shih and Robert Clarke and Eric P. Hoffman and Subha Madhavan and Jianhua Xuan and Yue Joseph Wang}, title = {{PUGSVM:} a caBIG\({}^{\mbox{TM}}\) analytical tool for multiclass gene selection and predictive classification}, journal = {Bioinform.}, volume = {27}, number = {5}, pages = {736--738}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btq721}, doi = {10.1093/BIOINFORMATICS/BTQ721}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/YuLHSCHMXW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangTJLSMCHXHW11, author = {Bai Zhang and Ye Tian and Lu Jin and Huai Li and Ie{-}Ming Shih and Subha Madhavan and Robert Clarke and Eric P. Hoffman and Jianhua Xuan and Leena Hilakivi{-}Clarke and Yue Joseph Wang}, title = {{DDN:} a caBIG\({}^{\mbox{{\textregistered}}}\) analytical tool for differential network analysis}, journal = {Bioinform.}, volume = {27}, number = {7}, pages = {1036--1038}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btr052}, doi = {10.1093/BIOINFORMATICS/BTR052}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangTJLSMCHXHW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GongXCRLHCW11, author = {Ting Gong and Jianhua Xuan and Li Chen and Rebecca B. Riggins and Huai Li and Eric P. Hoffman and Robert Clarke and Yue Joseph Wang}, title = {Motif-guided sparse decomposition of gene expression data for regulatory module identification}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {82}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-82}, doi = {10.1186/1471-2105-12-82}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GongXCRLHCW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenXRWHC10, author = {Li Chen and Jianhua Xuan and Rebecca B. Riggins and Yue Joseph Wang and Eric P. Hoffman and Robert Clarke}, title = {Multilevel support vector regression analysis to identify condition-specific regulatory networks}, journal = {Bioinform.}, volume = {26}, number = {11}, pages = {1416--1422}, year = {2010}, url = {https://doi.org/10.1093/bioinformatics/btq144}, doi = {10.1093/BIOINFORMATICS/BTQ144}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenXRWHC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WangXLWZHC10, author = {Chen Wang and Jianhua Xuan and Huai Li and Yue Joseph Wang and Ming Zhan and Eric P. Hoffman and Robert Clarke}, title = {Knowledge-guided gene ranking by coordinative component analysis}, journal = {{BMC} Bioinform.}, volume = {11}, pages = {162}, year = {2010}, url = {https://doi.org/10.1186/1471-2105-11-162}, doi = {10.1186/1471-2105-11-162}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WangXLWZHC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jmlr/YuFMXHCDSW10, author = {Guoqiang Yu and Yuanjian Feng and David J. Miller and Jianhua Xuan and Eric P. Hoffman and Robert Clarke and Ben Davidson and Ie{-}Ming Shih and Yue Joseph Wang}, title = {Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases}, journal = {J. Mach. Learn. Res.}, volume = {11}, pages = {2141--2167}, year = {2010}, url = {https://dl.acm.org/doi/10.5555/1756006.1859924}, doi = {10.5555/1756006.1859924}, timestamp = {Thu, 02 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jmlr/YuFMXHCDSW10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icmla/WangHWXH10, author = {Chen Wang and Sook S. Ha and Yue Joseph Wang and Jianhua Xuan and Eric P. Hoffman}, editor = {Sorin Draghici and Taghi M. Khoshgoftaar and Vasile Palade and Witold Pedrycz and M. Arif Wani and Xingquan Zhu}, title = {Computational Analysis of Muscular Dystrophy Sub-types Using a Novel Integrative Scheme}, booktitle = {The Ninth International Conference on Machine Learning and Applications, {ICMLA} 2010, Washington, DC, USA, 12-14 December 2010}, pages = {287--292}, publisher = {{IEEE} Computer Society}, year = {2010}, url = {https://doi.org/10.1109/ICMLA.2010.49}, doi = {10.1109/ICMLA.2010.49}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icmla/WangHWXH10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangLRZXZHCW09, author = {Bai Zhang and Huai Li and Rebecca B. Riggins and Ming Zhan and Jianhua Xuan and Zhen Zhang and Eric P. Hoffman and Robert Clarke and Yue Joseph Wang}, title = {Differential dependency network analysis to identify condition-specific topological changes in biological networks}, journal = {Bioinform.}, volume = {25}, number = {4}, pages = {526--532}, year = {2009}, url = {https://doi.org/10.1093/bioinformatics/btn660}, doi = {10.1093/BIOINFORMATICS/BTN660}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLRZXZHCW09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijcbdd/ChenXWHRC09, author = {Li Chen and Jianhua Xuan and Yue Joseph Wang and Eric P. Hoffman and Rebecca B. Riggins and Robert Clarke}, title = {Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis}, journal = {Int. J. Comput. Biol. Drug Des.}, volume = {2}, number = {1}, pages = {1--20}, year = {2009}, url = {https://doi.org/10.1504/IJCBDD.2009.027582}, doi = {10.1504/IJCBDD.2009.027582}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijcbdd/ChenXWHRC09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/ChenXWWSWZCH09, author = {Li Chen and Jianhua Xuan and Chen Wang and Yue Joseph Wang and Ie{-}Ming Shih and Tian{-}Li Wang and Zhen Zhang and Robert Clarke and Eric P. Hoffman}, title = {Biomarker identification by knowledge-driven multilevel {ICA} and motif analysis}, journal = {Int. J. Data Min. Bioinform.}, volume = {3}, number = {4}, pages = {365--381}, year = {2009}, url = {https://doi.org/10.1504/IJDMB.2009.029201}, doi = {10.1504/IJDMB.2009.029201}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijdmb/ChenXWWSWZCH09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tvcg/KimLKHS09, author = {Bo Hyoung Kim and Bongshin Lee and Susan Knoblach and Eric P. Hoffman and Jinwook Seo}, title = {GeneShelf: {A} Web-based Visual Interface for Large Gene Expression Time-Series Data Repositories}, journal = {{IEEE} Trans. Vis. Comput. Graph.}, volume = {15}, number = {6}, pages = {905--912}, year = {2009}, url = {https://doi.org/10.1109/TVCG.2009.146}, doi = {10.1109/TVCG.2009.146}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tvcg/KimLKHS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChenXWSWZHC08, author = {Li Chen and Jianhua Xuan and Chen Wang and Ie{-}Ming Shih and Yue Joseph Wang and Zhen Zhang and Eric P. Hoffman and Robert Clarke}, title = {Knowledge-guided multi-scale independent component analysis for biomarker identification}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-416}, doi = {10.1186/1471-2105-9-416}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChenXWSWZHC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WangXCZWCH08, author = {Chen Wang and Jianhua Xuan and Li Chen and Po Zhao and Yue Joseph Wang and Robert Clarke and Eric P. Hoffman}, title = {Motif-directed network component analysis for regulatory network inference}, journal = {{BMC} Bioinform.}, volume = {9}, number = {{S-1}}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-S1-S21}, doi = {10.1186/1471-2105-9-S1-S21}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WangXCZWCH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhuLMWXCHW08, author = {Yitan Zhu and Huai Li and David J. Miller and Zuyi Wang and Jianhua Xuan and Robert Clarke and Eric P. Hoffman and Yue Joseph Wang}, title = {caBIG\({}^{\mbox{TM}}\) {VISDA:} Modeling, visualization, and discovery for cluster analysis of genomic data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-383}, doi = {10.1186/1471-2105-9-383}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhuLMWXCHW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcbgc/WangXCHC08, author = {Chen Wang and Jianhua Xuan and Li Chen and Eric P. Hoffman and Robert Clarke}, editor = {Mukesh Doble and William Loging and James Malone and Vincent Shin{-}Mu Tseng}, title = {Reliability Analysis of Transcriptional Regulatory Networks}, booktitle = {International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics, BCBGC-08, Orlando, Florida, {USA} , July 7-10, 2008}, pages = {42--48}, publisher = {{ISRST}}, year = {2008}, timestamp = {Tue, 28 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bcbgc/WangXCHC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcbgc/XiongWZWHCX08, author = {Jianghui Xiong and Chen Wang and Bai Zhang and Yue Joseph Wang and Eric P. Hoffman and Robert Clarke and Jianhua Xuan}, editor = {Mukesh Doble and William Loging and James Malone and Vincent Shin{-}Mu Tseng}, title = {Inferring Condition-Specific miRNA-Gene Modules from miRNA and mRNA Profiling Data}, booktitle = {International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics, BCBGC-08, Orlando, Florida, {USA} , July 7-10, 2008}, pages = {49--55}, publisher = {{ISRST}}, year = {2008}, timestamp = {Tue, 14 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bcbgc/XiongWZWHCX08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/biocomp/ChenXRWHC08, author = {Li Chen and Jianhua Xuan and Rebecca B. Riggins and Yue Joseph Wang and Eric P. Hoffman and Robert Clarke}, editor = {Hamid R. Arabnia and Mary Qu Yang and Jack Y. Yang}, title = {Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis}, booktitle = {International Conference on Bioinformatics {\&} Computational Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA, 2 Volumes}, pages = {23--28}, publisher = {{CSREA} Press}, year = {2008}, timestamp = {Thu, 16 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/biocomp/ChenXRWHC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/biocomp/GongXRWHC08, author = {Ting Gong and Jianhua Xuan and Rebecca B. Riggins and Yue Joseph Wang and Eric P. Hoffman and Robert Clarke}, editor = {Hamid R. Arabnia and Mary Qu Yang and Jack Y. Yang}, title = {Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding Information}, booktitle = {International Conference on Bioinformatics {\&} Computational Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA, 2 Volumes}, pages = {191--197}, publisher = {{CSREA} Press}, year = {2008}, timestamp = {Mon, 04 Apr 2011 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/biocomp/GongXRWHC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/WangXCZWCH08, author = {Chen Wang and Jianhua Xuan and Li Chen and Po Zhao and Yue Joseph Wang and Robert Clarke and Eric P. Hoffman}, editor = {Ion I. Mandoiu and Raj Sunderraman and Alexander Zelikovsky}, title = {Integrative Network Component Analysis for Regulatory Network Reconstruction}, booktitle = {Bioinformatics Research and Applications, Fourth International Symposium, {ISBRA} 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4983}, pages = {196--207}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-79450-9\_19}, doi = {10.1007/978-3-540-79450-9\_19}, timestamp = {Wed, 25 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbra/WangXCZWCH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/GongXCRWHC08, author = {Ting Gong and Jianhua Xuan and Li Chen and Rebecca B. Riggins and Yue Joseph Wang and Eric P. Hoffman and Robert Clarke}, editor = {Ion I. Mandoiu and Raj Sunderraman and Alexander Zelikovsky}, title = {Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information}, booktitle = {Bioinformatics Research and Applications, Fourth International Symposium, {ISBRA} 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4983}, pages = {244--255}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-79450-9\_23}, doi = {10.1007/978-3-540-79450-9\_23}, timestamp = {Wed, 25 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbra/GongXCRWHC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ejbsb/XuanWDFWKBWPWCCH07, author = {Jianhua Xuan and Yue Joseph Wang and Yibin Dong and Yuanjian Feng and Bin Wang and Javed I. Khan and Marina Bakay and Zuyi Wang and Lauren Pachman and Sara Winokur and Yi{-}Wen Chen and Robert Clarke and Eric P. Hoffman}, title = {Gene Selection for Multiclass Prediction by Weighted Fisher Criterion}, journal = {{EURASIP} J. Bioinform. Syst. Biol.}, volume = {2007}, year = {2007}, url = {https://doi.org/10.1155/2007/64628}, doi = {10.1155/2007/64628}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ejbsb/XuanWDFWKBWPWCCH07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/biocomp/WangXGCHW07, author = {Chen Wang and Jianhua Xuan and Ting Gong and Robert Clarke and Eric P. Hoffman and Yue Joseph Wang}, editor = {Hamid R. Arabnia and Mary Qu Yang and Jack Y. Yang}, title = {Stability-Based Dimension Estimation of {ICA} with Application to Microarray Data Analysis}, booktitle = {International Conference on Bioinformatics {\&} Computational Biology, {BIOCOMP} 2007, Volume I, June 25-28, 2007, Las Vegas Nevada, {USA}}, pages = {132--138}, publisher = {{CSREA} Press}, year = {2007}, timestamp = {Tue, 14 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/biocomp/WangXGCHW07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icmla/ChenWSWZWCHX07, author = {Li Chen and Chen Wang and Ie{-}Ming Shih and Tian{-}Li Wang and Zhen Zhang and Yue Joseph Wang and Robert Clarke and Eric P. Hoffman and Jianhua Xuan}, editor = {M. Arif Wani and Mehmed M. Kantardzic and Tao Li and Ying Liu and Lukasz A. Kurgan and Jieping Ye and Mitsunori Ogihara and Seref Sagiroglu and Xue{-}wen Chen and Leif E. Peterson and Khalid Hafeez}, title = {Biomarker Identification by Knowledge-Driven Multi-Level {ICA} and Motif Analysis}, booktitle = {The Sixth International Conference on Machine Learning and Applications, {ICMLA} 2007, Cincinnati, Ohio, USA, 13-15 December 2007}, pages = {560--566}, publisher = {{IEEE} Computer Society}, year = {2007}, url = {https://doi.org/10.1109/ICMLA.2007.58}, doi = {10.1109/ICMLA.2007.58}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icmla/ChenWSWZWCHX07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangWXDBFCH06, author = {Zuyi Wang and Yue Joseph Wang and Jianhua Xuan and Yibin Dong and Marina Bakay and Yuanjian Feng and Robert Clarke and Eric P. Hoffman}, title = {Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data}, journal = {Bioinform.}, volume = {22}, number = {6}, pages = {755--761}, year = {2006}, url = {https://doi.org/10.1093/bioinformatics/btk036}, doi = {10.1093/BIOINFORMATICS/BTK036}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangWXDBFCH06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SeoGH06, author = {Jinwook Seo and Heather Gordish{-}Dressman and Eric P. Hoffman}, title = {An interactive power analysis tool for microarray hypothesis testing and generation}, journal = {Bioinform.}, volume = {22}, number = {7}, pages = {808--814}, year = {2006}, url = {https://doi.org/10.1093/bioinformatics/btk052}, doi = {10.1093/BIOINFORMATICS/BTK052}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SeoGH06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SeoH06, author = {Jinwook Seo and Eric P. Hoffman}, title = {Probe set algorithms: is there a rational best bet?}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {395}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-395}, doi = {10.1186/1471-2105-7-395}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SeoH06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/caine/MolineauxXGZHCW06, author = {Justin Molineaux and Jianhua Xuan and Ting Gong and Yitan Zhu and Eric P. Hoffman and Robert Clarke and Yue Joseph Wang}, editor = {Thomas Philip}, title = {ModVis: An information visualization tool for gene module discovery}, booktitle = {Proceedings of the {ISCA} 19th International Conference on Computer Applications in Industry and Engineering, {CAINE} 2006, November 13-15, 2006, Las Vegas, Nevada, {USA}}, pages = {24--31}, publisher = {{ISCA}}, year = {2006}, timestamp = {Mon, 04 Apr 2011 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/caine/MolineauxXGZHCW06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/embc/ZhuWFXMHW06, author = {Yitan Zhu and Zuyi Wang and Yuanjian Feng and Jianhua Xuan and David J. Miller and Eric P. Hoffman and Yue Wang}, title = {Phenotypic-Specific Gene Module Discovery using a Diagnostic Tree and caBIGTM {VISDA}}, booktitle = {28th International Conference of the {IEEE} Engineering in Medicine and Biology Society, {EMBC} 2006, New York City, NY, USA, August 30 - September 3, 2006, Main Volume}, pages = {5767--5770}, publisher = {{IEEE}}, year = {2006}, url = {https://doi.org/10.1109/IEMBS.2006.260031}, doi = {10.1109/IEMBS.2006.260031}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/embc/ZhuWFXMHW06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/embc/GongZXLCHW06, author = {Ting Gong and Yitan Zhu and Jianhua Xuan and Huai Li and Robert Clarke and Eric P. Hoffman and Yue Wang}, title = {Latent Variable and nICA Modeling of Pathway Gene Module Composite}, booktitle = {28th International Conference of the {IEEE} Engineering in Medicine and Biology Society, {EMBC} 2006, New York City, NY, USA, August 30 - September 3, 2006, Main Volume}, pages = {5872--5875}, publisher = {{IEEE}}, year = {2006}, url = {https://doi.org/10.1109/IEMBS.2006.260697}, doi = {10.1109/IEMBS.2006.260697}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/embc/GongZXLCHW06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibe/XuanHCW05, author = {Jianhua Xuan and Eric P. Hoffman and Robert Clarke and Yue Joseph Wang}, title = {Normalization of Microarray Data by Iterative Nonlinear Regression}, booktitle = {Fifth {IEEE} International Symposium on Bioinformatic and Bioengineering {(BIBE} 2005), 19-21 October 2005, Minneapolis, MN, {USA}}, pages = {267--270}, publisher = {{IEEE} Computer Society}, year = {2005}, url = {https://doi.org/10.1109/BIBE.2005.43}, doi = {10.1109/BIBE.2005.43}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibe/XuanHCW05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/ws/05/XuanDKCHW05, author = {Jianhua Xuan and Yibin Dong and Javed I. Khan and Robert Clarke and Eric P. Hoffman and Yue Wang}, editor = {Matthew He and Giri Narasimhan and Sergei V. Petoukhov}, title = {Gene Selection by Weighted Fisher criterion for Multiclass Prediction}, booktitle = {Advances in Bioinformatics and Its Applications}, series = {Series in mathematical biology and medicine}, volume = {8}, publisher = {World Scientific}, year = {2005}, url = {https://doi.org/10.1142/9789812702098\_0023}, doi = {10.1142/9789812702098\_0023}, timestamp = {Mon, 06 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/books/ws/05/XuanDKCHW05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SeoBCHSH04, author = {Jinwook Seo and Marina Bakay and Yi{-}Wen Chen and Sara Hilmer and Ben Shneiderman and Eric P. Hoffman}, title = {Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays}, journal = {Bioinform.}, volume = {20}, number = {16}, pages = {2534--2544}, year = {2004}, url = {https://doi.org/10.1093/bioinformatics/bth280}, doi = {10.1093/BIOINFORMATICS/BTH280}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SeoBCHSH04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/ChenZMCADJH04, author = {Josephine Chen and Po Zhao and Donald Massaro and Linda B. Clerch and Richard R. Almon and Debra C. DuBois and William J. Jusko and Eric P. Hoffman}, title = {The {PEPR} GeneChip data warehouse, and implementation of a dynamic time series query tool {(SGQT)} with graphical interface}, journal = {Nucleic Acids Res.}, volume = {32}, number = {Database-Issue}, pages = {578--581}, year = {2004}, url = {https://doi.org/10.1093/nar/gkh003}, doi = {10.1093/NAR/GKH003}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/ChenZMCADJH04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icpr/XuanDKHCW04, author = {Jianhua Xuan and Yibin Dong and Javed I. Khan and Eric P. Hoffman and Robert Clarke and Yue Joseph Wang}, title = {Robust Feature Selection by Weighted Fisher Criterion for Multiclass Prediction in Gene Expression Profiling}, booktitle = {17th International Conference on Pattern Recognition, {ICPR} 2004, Cambridge, UK, August 23-26, 2004}, pages = {291--294}, publisher = {{IEEE} Computer Society}, year = {2004}, url = {https://doi.org/10.1109/ICPR.2004.1334170}, doi = {10.1109/ICPR.2004.1334170}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icpr/XuanDKHCW04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icmcs/SeoBZCCSH03, author = {Jinwook Seo and Marina Bakay and Po Zhao and Yi{-}Wen Chen and Priscilla Clarkson and Ben Shneiderman and Eric P. Hoffman}, title = {Interactive color mosaic and dendrogram displays for signal/noise optimization in microarray data analysis}, booktitle = {Proceedings of the 2003 {IEEE} International Conference on Multimedia and Expo, {ICME} 2003, 6-9 July 2003, Baltimore, MD, {USA}}, pages = {461--464}, publisher = {{IEEE} Computer Society}, year = {2003}, url = {https://doi.org/10.1109/ICME.2003.1221348}, doi = {10.1109/ICME.2003.1221348}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icmcs/SeoBZCCSH03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BakayCBZNH02, author = {Marina Bakay and Yi{-}Wen Chen and Rehannah H. A. Borup and Po Zhao and Kanneboyina Nagaraju and Eric P. Hoffman}, title = {Sources of variability and effect of experimental approach on expression profiling data interpretation}, journal = {{BMC} Bioinform.}, volume = {3}, pages = {4}, year = {2002}, url = {https://doi.org/10.1186/1471-2105-3-4}, doi = {10.1186/1471-2105-3-4}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BakayCBZNH02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BorupTCTLVH02, author = {Rehannah H. A. Borup and Stefano Toppo and Yi{-}Wen Chen and Tanya M. Teslovich and Gerolamo Lanfranchi and Giorgio Valle and Eric P. Hoffman}, title = {Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs}, journal = {{BMC} Bioinform.}, volume = {3}, pages = {33}, year = {2002}, url = {https://doi.org/10.1186/1471-2105-3-33}, doi = {10.1186/1471-2105-3-33}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BorupTCTLVH02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismb/PathakHP94, author = {Dhiraj K. Pathak and Eric P. Hoffman and Mark W. Perlin}, editor = {Russ B. Altman and Douglas L. Brutlag and Peter D. Karp and Richard H. Lathrop and David B. Searls}, title = {Intelligent DNA-Based Molecular Diagnostics Using Linked Genetic Markers}, booktitle = {Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, August 14-17, 1994, Stanford University, Stanford, California, {USA}}, pages = {331--339}, publisher = {{AAAI}}, year = {1994}, url = {http://www.aaai.org/Library/ISMB/1994/ismb94-041.php}, timestamp = {Thu, 13 Dec 2012 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/ismb/PathakHP94.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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