BibTeX records: Ali Gooya

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@article{DBLP:journals/mia/ZakeriHBWNPFTG23,
  author       = {Arezoo Zakeri and
                  Alireza Hokmabadi and
                  Ning Bi and
                  Isuru Wijesinghe and
                  Michael G. Nix and
                  Steffen E. Petersen and
                  Alejandro F. Frangi and
                  Zeike A. Taylor and
                  Ali Gooya},
  title        = {DragNet: Learning-based deformable registration for realistic cardiac
                  {MR} sequence generation from a single frame},
  journal      = {Medical Image Anal.},
  volume       = {83},
  pages        = {102678},
  year         = {2023},
  url          = {https://doi.org/10.1016/j.media.2022.102678},
  doi          = {10.1016/J.MEDIA.2022.102678},
  timestamp    = {Sat, 13 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/ZakeriHBWNPFTG23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/ElhaminiaGLAFSAG23,
  author       = {Behnaz Elhaminia and
                  Alexandra Gilbert and
                  John Lilley and
                  Moloud Abdar and
                  Alejandro F. Frangi and
                  Andrew F. Scarsbrook and
                  Ane Appelt and
                  Ali Gooya},
  title        = {Toxicity Prediction in Pelvic Radiotherapy Using Multiple Instance
                  Learning and Cascaded Attention Layers},
  journal      = {{IEEE} J. Biomed. Health Informatics},
  volume       = {27},
  number       = {4},
  pages        = {1958--1966},
  year         = {2023},
  url          = {https://doi.org/10.1109/JBHI.2023.3238825},
  doi          = {10.1109/JBHI.2023.3238825},
  timestamp    = {Sat, 29 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/titb/ElhaminiaGLAFSAG23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/ElhaminiaGFSLAG23,
  author       = {Behnaz Elhaminia and
                  Alexandra Gilbert and
                  Alejandro F. Frangi and
                  Andrew F. Scarsbrook and
                  John Lilley and
                  Ane Appelt and
                  Ali Gooya},
  editor       = {Khan M. Iftekharuddin and
                  Weijie Chen},
  title        = {Deep learning with visual explanation for radiotherapy-induced toxicity
                  prediction},
  booktitle    = {Medical Imaging 2023: Computer-Aided Diagnosis, San Diego, CA, USA,
                  February 19-23, 2023},
  series       = {{SPIE} Proceedings},
  volume       = {12465},
  publisher    = {{SPIE}},
  year         = {2023},
  url          = {https://doi.org/10.1117/12.2652481},
  doi          = {10.1117/12.2652481},
  timestamp    = {Thu, 21 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/micad/ElhaminiaGFSLAG23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/KalaieBFG23,
  author       = {Soodeh Kalaie and
                  Andrew J. Bulpitt and
                  Alejandro F. Frangi and
                  Ali Gooya},
  editor       = {Ipek Oguz and
                  Jack H. Noble and
                  Xiaoxiao Li and
                  Martin Styner and
                  Christian Baumgartner and
                  Mirabela Rusu and
                  Tobias Heimann and
                  Despina Kontos and
                  Bennett A. Landman and
                  Benoit M. Dawant},
  title        = {A Geometric Deep Learning Framework for Generation of Virtual Left
                  Ventricles as Graphs},
  booktitle    = {Medical Imaging with Deep Learning, {MIDL} 2023, 10-12 July 2023,
                  Nashville, TN, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {227},
  pages        = {426--443},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v227/kalaie24a.html},
  timestamp    = {Tue, 20 Feb 2024 17:19:52 +0100},
  biburl       = {https://dblp.org/rec/conf/midl/KalaieBFG23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/ZakeriHRFG22,
  author       = {Arezoo Zakeri and
                  Alireza Hokmabadi and
                  Nishant Ravikumar and
                  Alejandro F. Frangi and
                  Ali Gooya},
  title        = {A probabilistic deep motion model for unsupervised cardiac shape anomaly
                  assessment},
  journal      = {Medical Image Anal.},
  volume       = {75},
  pages        = {102276},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.media.2021.102276},
  doi          = {10.1016/J.MEDIA.2021.102276},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/ZakeriHRFG22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/GodsonKNCCTBNG22,
  author       = {Lucy Godson and
                  Navid Alemi Koohbanani and
                  Jeremie Nsengimana and
                  Graham P. Cook and
                  Emily L. Clarke and
                  Darren Treanor and
                  D. Timothy Bishop and
                  Julia Newton{-}Bishop and
                  Ali Gooya},
  editor       = {Ender Konukoglu and
                  Bjoern H. Menze and
                  Archana Venkataraman and
                  Christian F. Baumgartner and
                  Qi Dou and
                  Shadi Albarqouni},
  title        = {Weakly-supervised learning for image-based classification of primary
                  melanomas into genomic immune subgroups},
  booktitle    = {International Conference on Medical Imaging with Deep Learning, {MIDL}
                  2022, 6-8 July 2022, Zurich, Switzerland},
  series       = {Proceedings of Machine Learning Research},
  volume       = {172},
  pages        = {423--440},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v172/godson22a.html},
  timestamp    = {Fri, 17 Feb 2023 16:29:10 +0100},
  biburl       = {https://dblp.org/rec/conf/midl/GodsonKNCCTBNG22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2202-11524,
  author       = {Lucy Godson and
                  Navid Alemi Koohbanani and
                  Jeremie Nsengimana and
                  Graham P. Cook and
                  Emily L. Clarke and
                  Darren Treanor and
                  D. Timothy Bishop and
                  Julia Newton{-}Bishop and
                  Ali Gooya},
  title        = {Weakly-supervised learning for image-based classification of primary
                  melanomas into genomic immune subgroups},
  journal      = {CoRR},
  volume       = {abs/2202.11524},
  year         = {2022},
  url          = {https://arxiv.org/abs/2202.11524},
  eprinttype    = {arXiv},
  eprint       = {2202.11524},
  timestamp    = {Thu, 03 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2202-11524.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/KumarVAZOTCHLHW20,
  author       = {Neeraj Kumar and
                  Ruchika Verma and
                  Deepak Anand and
                  Yanning Zhou and
                  Omer Fahri Onder and
                  Efstratios Tsougenis and
                  Hao Chen and
                  Pheng{-}Ann Heng and
                  Jiahui Li and
                  Zhiqiang Hu and
                  Yunzhi Wang and
                  Navid Alemi Koohbanani and
                  Mostafa Jahanifar and
                  Neda Zamani Tajeddin and
                  Ali Gooya and
                  Nasir M. Rajpoot and
                  Xuhua Ren and
                  Sihang Zhou and
                  Qian Wang and
                  Dinggang Shen and
                  Cheng{-}Kun Yang and
                  Chi{-}Hung Weng and
                  Wei{-}Hsiang Yu and
                  Chao{-}Yuan Yeh and
                  Shuang Yang and
                  Shuoyu Xu and
                  Pak{-}Hei Yeung and
                  Peng Sun and
                  Amirreza Mahbod and
                  Gerald Schaefer and
                  Isabella Ellinger and
                  Rupert Ecker and
                  {\"{O}}rjan Smedby and
                  Chunliang Wang and
                  Benjamin Chidester and
                  That{-}Vinh Ton and
                  Minh{-}Triet Tran and
                  Jian Ma and
                  Minh N. Do and
                  Simon Graham and
                  Quoc Dang Vu and
                  Jin Tae Kwak and
                  Akshaykumar Gunda and
                  Raviteja Chunduri and
                  Corey Hu and
                  Xiaoyang Zhou and
                  Dariush Lotfi and
                  Reza Safdari and
                  Antanas Kascenas and
                  Alison O'Neil and
                  Dennis Eschweiler and
                  Johannes Stegmaier and
                  Yanping Cui and
                  Baocai Yin and
                  Kailin Chen and
                  Xinmei Tian and
                  Philipp Gr{\"{u}}ning and
                  Erhardt Barth and
                  Elad Arbel and
                  Itay Remer and
                  Amir Ben{-}Dor and
                  Ekaterina Sirazitdinova and
                  Matthias Kohl and
                  Stefan Braunewell and
                  Yuexiang Li and
                  Xinpeng Xie and
                  Linlin Shen and
                  Jun Ma and
                  Krishanu Das Baksi and
                  Mohammad Azam Khan and
                  Jaegul Choo and
                  Adri{\'{a}}n Colomer and
                  Valery Naranjo and
                  Linmin Pei and
                  Khan M. Iftekharuddin and
                  Kaushiki Roy and
                  Debotosh Bhattacharjee and
                  An{\'{\i}}bal Pedraza and
                  Maria Gloria Bueno and
                  Sabarinathan Devanathan and
                  Saravanan Radhakrishnan and
                  Praveen Koduganty and
                  Zihan Wu and
                  Guanyu Cai and
                  Xiaojie Liu and
                  Yuqin Wang and
                  Amit Sethi},
  title        = {A Multi-Organ Nucleus Segmentation Challenge},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {39},
  number       = {5},
  pages        = {1380--1391},
  year         = {2020},
  url          = {https://doi.org/10.1109/TMI.2019.2947628},
  doi          = {10.1109/TMI.2019.2947628},
  timestamp    = {Fri, 16 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tmi/KumarVAZOTCHLHW20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/RavikumarGBFT19,
  author       = {Nishant Ravikumar and
                  Ali Gooya and
                  Leandro Beltrachini and
                  Alejandro F. Frangi and
                  Zeike A. Taylor},
  title        = {Generalised coherent point drift for group-wise multi-dimensional
                  analysis of diffusion brain {MRI} data},
  journal      = {Medical Image Anal.},
  volume       = {53},
  pages        = {47--63},
  year         = {2019},
  url          = {https://doi.org/10.1016/j.media.2019.01.001},
  doi          = {10.1016/J.MEDIA.2019.01.001},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/RavikumarGBFT19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/AttarPGAZVLALSF19,
  author       = {Rahman Attar and
                  Marco Perea{\~{n}}ez and
                  Ali Gooya and
                  X{\`{e}}nia Alb{\`{a}} and
                  Le Zhang and
                  Milton Hoz de Vila and
                  Aaron M. Lee and
                  Nay Aung and
                  Elena Lukaschuk and
                  Mihir M. Sanghvi and
                  Kenneth Fung and
                  Jos{\'{e}} Miguel Paiva and
                  Stefan K. Piechnik and
                  Stefan Neubauer and
                  Steffen E. Petersen and
                  Alejandro F. Frangi},
  title        = {Quantitative {CMR} population imaging on 20, 000 subjects of the {UK}
                  Biobank imaging study: {LV/RV} quantification pipeline and its evaluation},
  journal      = {Medical Image Anal.},
  volume       = {56},
  pages        = {26--42},
  year         = {2019},
  url          = {https://doi.org/10.1016/j.media.2019.05.006},
  doi          = {10.1016/J.MEDIA.2019.05.006},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/AttarPGAZVLALSF19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/ZhangGPDPNPF19,
  author       = {Le Zhang and
                  Ali Gooya and
                  Marco Perea{\~{n}}ez and
                  Bo Dong and
                  Stefan K. Piechnik and
                  Stefan Neubauer and
                  Steffen E. Petersen and
                  Alejandro F. Frangi},
  title        = {Automatic Assessment of Full Left Ventricular Coverage in Cardiac
                  Cine Magnetic Resonance Imaging With Fisher-Discriminative 3-D {CNN}},
  journal      = {{IEEE} Trans. Biomed. Eng.},
  volume       = {66},
  number       = {7},
  pages        = {1975--1986},
  year         = {2019},
  url          = {https://doi.org/10.1109/TBME.2018.2881952},
  doi          = {10.1109/TBME.2018.2881952},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tbe/ZhangGPDPNPF19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tip/FehriGLMJF19,
  author       = {Hamid Fehri and
                  Ali Gooya and
                  Yuanjun Lu and
                  Erik Meijering and
                  Simon A. Johnston and
                  Alejandro F. Frangi},
  title        = {Bayesian Polytrees With Learned Deep Features for Multi-Class Cell
                  Segmentation},
  journal      = {{IEEE} Trans. Image Process.},
  volume       = {28},
  number       = {7},
  pages        = {3246--3260},
  year         = {2019},
  url          = {https://doi.org/10.1109/TIP.2019.2895455},
  doi          = {10.1109/TIP.2019.2895455},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tip/FehriGLMJF19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/JahanifarTAG19,
  author       = {Mostafa Jahanifar and
                  Neda Zamani Tajeddin and
                  Babak Mohammadzadeh Asl and
                  Ali Gooya},
  title        = {Supervised Saliency Map Driven Segmentation of Lesions in Dermoscopic
                  Images},
  journal      = {{IEEE} J. Biomed. Health Informatics},
  volume       = {23},
  number       = {2},
  pages        = {509--518},
  year         = {2019},
  url          = {https://doi.org/10.1109/JBHI.2018.2839647},
  doi          = {10.1109/JBHI.2018.2839647},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/titb/JahanifarTAG19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KoohbananiJGR19,
  author       = {Navid Alemi Koohbanani and
                  Mostafa Jahanifar and
                  Ali Gooya and
                  Nasir M. Rajpoot},
  editor       = {Dinggang Shen and
                  Tianming Liu and
                  Terry M. Peters and
                  Lawrence H. Staib and
                  Caroline Essert and
                  Sean Zhou and
                  Pew{-}Thian Yap and
                  Ali R. Khan},
  title        = {Nuclear Instance Segmentation Using a Proposal-Free Spatially Aware
                  Deep Learning Framework},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2019 - 22nd International Conference, Shenzhen, China, October 13-17,
                  2019, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11764},
  pages        = {622--630},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-32239-7\_69},
  doi          = {10.1007/978-3-030-32239-7\_69},
  timestamp    = {Mon, 19 Feb 2024 14:24:13 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/KoohbananiJGR19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2019sashimi,
  editor       = {Ninon Burgos and
                  Ali Gooya and
                  David Svoboda},
  title        = {Simulation and Synthesis in Medical Imaging - 4th International Workshop,
                  {SASHIMI} 2019, Held in Conjunction with {MICCAI} 2019, Shenzhen,
                  China, October 13, 2019, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11827},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-32778-1},
  doi          = {10.1007/978-3-030-32778-1},
  isbn         = {978-3-030-32777-4},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/2019sashimi.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1901-03326,
  author       = {Rahman Attar and
                  Marco Perea{\~{n}}ez and
                  Ali Gooya and
                  X{\`{e}}nia Alb{\`{a}} and
                  Le Zhang and
                  Stefan K. Piechnik and
                  Stefan Neubauer and
                  Steffen E. Petersen and
                  Alejandro F. Frangi},
  title        = {High Throughput Computation of Reference Ranges of Biventricular Cardiac
                  Function on the {UK} Biobank Population Cohort},
  journal      = {CoRR},
  volume       = {abs/1901.03326},
  year         = {2019},
  url          = {http://arxiv.org/abs/1901.03326},
  eprinttype    = {arXiv},
  eprint       = {1901.03326},
  timestamp    = {Thu, 10 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1901-03326.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/RavikumarGCFT18,
  author       = {Nishant Ravikumar and
                  Ali Gooya and
                  Serkan {\c{C}}imen and
                  Alejandro F. Frangi and
                  Zeike A. Taylor},
  title        = {Group-wise similarity registration of point sets using Student's t-mixture
                  model for statistical shape models},
  journal      = {Medical Image Anal.},
  volume       = {44},
  pages        = {156--176},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.media.2017.11.012},
  doi          = {10.1016/J.MEDIA.2017.11.012},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/mia/RavikumarGCFT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pami/GooyaLCPF18,
  author       = {Ali Gooya and
                  Karim Lekadir and
                  Isaac Castro{-}Mateos and
                  Jos{\'{e}} Mar{\'{\i}}a Pozo and
                  Alejandro F. Frangi},
  title        = {Mixture of Probabilistic Principal Component Analyzers for Shapes
                  from Point Sets},
  journal      = {{IEEE} Trans. Pattern Anal. Mach. Intell.},
  volume       = {40},
  number       = {4},
  pages        = {891--904},
  year         = {2018},
  url          = {https://doi.org/10.1109/TPAMI.2017.2700276},
  doi          = {10.1109/TPAMI.2017.2700276},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/pami/GooyaLCPF18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/SuinesiaputraAA18,
  author       = {Avan Suinesiaputra and
                  Pierre Ablin and
                  X{\`{e}}nia Alb{\`{a}} and
                  Martino Alessandrini and
                  Jack Allen and
                  Wenjia Bai and
                  Serkan {\c{C}}imen and
                  Peter Claes and
                  Brett R. Cowan and
                  Jan D'hooge and
                  Nicolas Duchateau and
                  Jan Ehrhardt and
                  Alejandro F. Frangi and
                  Ali Gooya and
                  Vicente Grau and
                  Karim Lekadir and
                  Allen Lu and
                  Anirban Mukhopadhyay and
                  Ilkay {\"{O}}ks{\"{u}}z and
                  Nripesh Parajuli and
                  Xavier Pennec and
                  Marco Perea{\~{n}}ez and
                  Catarina Pinto and
                  Paolo Piras and
                  Marc{-}Michel Roh{\'{e}} and
                  Daniel Rueckert and
                  Dennis S{\"{a}}ring and
                  Maxime Sermesant and
                  Kaleem Siddiqi and
                  Mahdi Tabassian and
                  Luciano Teresi and
                  Sotirios A. Tsaftaris and
                  Matthias Wilms and
                  Alistair A. Young and
                  Xingyu Zhang and
                  Pau Medrano{-}Gracia},
  title        = {Statistical Shape Modeling of the Left Ventricle: Myocardial Infarct
                  Classification Challenge},
  journal      = {{IEEE} J. Biomed. Health Informatics},
  volume       = {22},
  number       = {2},
  pages        = {503--515},
  year         = {2018},
  url          = {https://doi.org/10.1109/JBHI.2017.2652449},
  doi          = {10.1109/JBHI.2017.2652449},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/titb/SuinesiaputraAA18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/AttarPGAZPNPF18,
  author       = {Rahman Attar and
                  Marco Perea{\~{n}}ez and
                  Ali Gooya and
                  X{\`{e}}nia Alb{\`{a}} and
                  Le Zhang and
                  Stefan K. Piechnik and
                  Stefan Neubauer and
                  Steffen E. Petersen and
                  Alejandro F. Frangi},
  editor       = {Mihaela Pop and
                  Maxime Sermesant and
                  Jichao Zhao and
                  Shuo Li and
                  Kristin McLeod and
                  Alistair A. Young and
                  Kawal S. Rhode and
                  Tommaso Mansi},
  title        = {High Throughput Computation of Reference Ranges of Biventricular Cardiac
                  Function on the {UK} Biobank Population Cohort},
  booktitle    = {Statistical Atlases and Computational Models of the Heart. Atrial
                  Segmentation and {LV} Quantification Challenges - 9th International
                  Workshop, {STACOM} 2018, Held in Conjunction with {MICCAI} 2018, Granada,
                  Spain, September 16, 2018, Revised Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {11395},
  pages        = {114--121},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-12029-0\_13},
  doi          = {10.1007/978-3-030-12029-0\_13},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/AttarPGAZPNPF18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KoohbananiJGR18,
  author       = {Navid Alemi Koohbanani and
                  Mostafa Jahanifar and
                  Ali Gooya and
                  Nasir M. Rajpoot},
  editor       = {Yinghuan Shi and
                  Heung{-}Il Suk and
                  Mingxia Liu},
  title        = {Nuclei Detection Using Mixture Density Networks},
  booktitle    = {Machine Learning in Medical Imaging - 9th International Workshop,
                  {MLMI} 2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain,
                  September 16, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11046},
  pages        = {241--248},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-00919-9\_28},
  doi          = {10.1007/978-3-030-00919-9\_28},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/KoohbananiJGR18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2018sashimi,
  editor       = {Ali Gooya and
                  Orcun Goksel and
                  Ipek Oguz and
                  Ninon Burgos},
  title        = {Simulation and Synthesis in Medical Imaging - Third International
                  Workshop, {SASHIMI} 2018, Held in Conjunction with {MICCAI} 2018,
                  Granada, Spain, September 16, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11037},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-00536-8},
  doi          = {10.1007/978-3-030-00536-8},
  isbn         = {978-3-030-00535-1},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/2018sashimi.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1808-08279,
  author       = {Navid Alemi Koohbanani and
                  Mostafa Jahanifar and
                  Ali Gooya and
                  Nasir M. Rajpoot},
  title        = {Nuclei Detection Using Mixture Density Networks},
  journal      = {CoRR},
  volume       = {abs/1808.08279},
  year         = {2018},
  url          = {http://arxiv.org/abs/1808.08279},
  eprinttype    = {arXiv},
  eprint       = {1808.08279},
  timestamp    = {Sun, 02 Sep 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1808-08279.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1809-10243,
  author       = {Navid Alemi Koohbanani and
                  Mostafa Jahanifar and
                  Neda Zamani Tajeddin and
                  Ali Gooya and
                  Nasir M. Rajpoot},
  title        = {Leveraging Transfer Learning for Segmenting Lesions and their Attributes
                  in Dermoscopy Images},
  journal      = {CoRR},
  volume       = {abs/1809.10243},
  year         = {2018},
  url          = {http://arxiv.org/abs/1809.10243},
  eprinttype    = {arXiv},
  eprint       = {1809.10243},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1809-10243.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1811-02688,
  author       = {Le Zhang and
                  Ali Gooya and
                  Marco Perea{\~{n}}ez and
                  Bo Dong and
                  Stefan K. Piechnik and
                  Stefan Neubauer and
                  Steffen E. Petersen and
                  Alejandro F. Frangi},
  title        = {Automatic Assessment of Full Left Ventricular Coverage in Cardiac
                  Cine Magnetic Resonance Imaging with Fisher-Discriminative 3D {CNN}},
  journal      = {CoRR},
  volume       = {abs/1811.02688},
  year         = {2018},
  url          = {http://arxiv.org/abs/1811.02688},
  eprinttype    = {arXiv},
  eprint       = {1811.02688},
  timestamp    = {Thu, 10 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1811-02688.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/KalaieG17,
  author       = {Soodeh Kalaie and
                  Ali Gooya},
  title        = {Vascular tree tracking and bifurcation points detection in retinal
                  images using a hierarchical probabilistic model},
  journal      = {Comput. Methods Programs Biomed.},
  volume       = {151},
  pages        = {139--149},
  year         = {2017},
  url          = {https://doi.org/10.1016/j.cmpb.2017.08.018},
  doi          = {10.1016/J.CMPB.2017.08.018},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cmpb/KalaieG17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/FehriGJF17,
  author       = {Hamid Fehri and
                  Ali Gooya and
                  Simon A. Johnston and
                  Alejandro F. Frangi},
  editor       = {Marc Niethammer and
                  Martin Styner and
                  Stephen R. Aylward and
                  Hongtu Zhu and
                  Ipek Oguz and
                  Pew{-}Thian Yap and
                  Dinggang Shen},
  title        = {Multi-class Image Segmentation in Fluorescence Microscopy Using Polytrees},
  booktitle    = {Information Processing in Medical Imaging - 25th International Conference,
                  {IPMI} 2017, Boone, NC, USA, June 25-30, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10265},
  pages        = {517--528},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59050-9\_41},
  doi          = {10.1007/978-3-319-59050-9\_41},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ipmi/FehriGJF17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhangGF17,
  author       = {Le Zhang and
                  Ali Gooya and
                  Alejandro F. Frangi},
  editor       = {Sotirios A. Tsaftaris and
                  Ali Gooya and
                  Alejandro F. Frangi and
                  Jerry L. Prince},
  title        = {Semi-supervised Assessment of Incomplete {LV} Coverage in Cardiac
                  {MRI} Using Generative Adversarial Nets},
  booktitle    = {Simulation and Synthesis in Medical Imaging - Second International
                  Workshop, {SASHIMI} 2017, Held in Conjunction with {MICCAI} 2017,
                  Qu{\'{e}}bec City, QC, Canada, September 10, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10557},
  pages        = {61--68},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-68127-6\_7},
  doi          = {10.1007/978-3-319-68127-6\_7},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ZhangGF17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/RavikumarGFT17,
  author       = {Nishant Ravikumar and
                  Ali Gooya and
                  Alejandro F. Frangi and
                  Zeike A. Taylor},
  editor       = {Maxime Descoteaux and
                  Lena Maier{-}Hein and
                  Alfred M. Franz and
                  Pierre Jannin and
                  D. Louis Collins and
                  Simon Duchesne},
  title        = {Generalised Coherent Point Drift for Group-Wise Registration of Multi-dimensional
                  Point Sets},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2017 - 20th International Conference, Quebec City, QC, Canada, September
                  11-13, 2017, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {10433},
  pages        = {309--316},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-66182-7\_36},
  doi          = {10.1007/978-3-319-66182-7\_36},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/RavikumarGFT17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2017sashimi,
  editor       = {Sotirios A. Tsaftaris and
                  Ali Gooya and
                  Alejandro F. Frangi and
                  Jerry L. Prince},
  title        = {Simulation and Synthesis in Medical Imaging - Second International
                  Workshop, {SASHIMI} 2017, Held in Conjunction with {MICCAI} 2017,
                  Qu{\'{e}}bec City, QC, Canada, September 10, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10557},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-68127-6},
  doi          = {10.1007/978-3-319-68127-6},
  isbn         = {978-3-319-68126-9},
  timestamp    = {Sun, 02 Jun 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/2017sashimi.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/JahanifarTGA17,
  author       = {Mostafa Jahanifar and
                  Neda Zamani Tajeddin and
                  Ali Gooya and
                  Babak Mohammadzadeh Asl},
  title        = {Segmentation of Lesions in Dermoscopy Images Using Saliency Map And
                  Contour Propagation},
  journal      = {CoRR},
  volume       = {abs/1703.00087},
  year         = {2017},
  url          = {http://arxiv.org/abs/1703.00087},
  eprinttype    = {arXiv},
  eprint       = {1703.00087},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/JahanifarTGA17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/CimenGGF16,
  author       = {Serkan {\c{C}}imen and
                  Ali Gooya and
                  Michael Grass and
                  Alejandro F. Frangi},
  title        = {Reconstruction of coronary arteries from X-ray angiography: {A} review},
  journal      = {Medical Image Anal.},
  volume       = {32},
  pages        = {46--68},
  year         = {2016},
  url          = {https://doi.org/10.1016/j.media.2016.02.007},
  doi          = {10.1016/J.MEDIA.2016.02.007},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/CimenGGF16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/FrangiTG16,
  author       = {Alejandro F. Frangi and
                  Zeike A. Taylor and
                  Ali Gooya},
  title        = {Precision Imaging: more descriptive, predictive and integrative imaging},
  journal      = {Medical Image Anal.},
  volume       = {33},
  pages        = {27--32},
  year         = {2016},
  url          = {https://doi.org/10.1016/j.media.2016.06.024},
  doi          = {10.1016/J.MEDIA.2016.06.024},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/FrangiTG16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhangGDHPMF16,
  author       = {Le Zhang and
                  Ali Gooya and
                  Bo Dong and
                  Rui Hua and
                  Steffen E. Petersen and
                  Pau Medrano{-}Gracia and
                  Alejandro F. Frangi},
  editor       = {Sotirios A. Tsaftaris and
                  Ali Gooya and
                  Alejandro F. Frangi and
                  Jerry L. Prince},
  title        = {Automated Quality Assessment of Cardiac {MR} Images Using Convolutional
                  Neural Networks},
  booktitle    = {Simulation and Synthesis in Medical Imaging - First International
                  Workshop, {SASHIMI} 2016, Held in Conjunction with {MICCAI} 2016,
                  Athens, Greece, October 21, 2016, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9968},
  pages        = {138--145},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-46630-9\_14},
  doi          = {10.1007/978-3-319-46630-9\_14},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ZhangGDHPMF16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/RavikumarGCFT16,
  author       = {Nishant Ravikumar and
                  Ali Gooya and
                  Serkan {\c{C}}imen and
                  Alejandro F. Frangi and
                  Zeike A. Taylor},
  editor       = {S{\'{e}}bastien Ourselin and
                  Leo Joskowicz and
                  Mert R. Sabuncu and
                  G{\"{o}}zde B. {\"{U}}nal and
                  William M. Wells III},
  title        = {A Multi-resolution T-Mixture Model Approach to Robust Group-Wise Alignment
                  of Shapes},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2016 - 19th International Conference, Athens, Greece, October 17-21,
                  2016, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {9902},
  pages        = {142--149},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-46726-9\_17},
  doi          = {10.1007/978-3-319-46726-9\_17},
  timestamp    = {Mon, 05 Feb 2024 20:27:27 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/RavikumarGCFT16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/Sarrami-Foroushani16,
  author       = {Ali Sarrami{-}Foroushani and
                  Toni Lassila and
                  Jose M. Pozo and
                  Ali Gooya and
                  Alejandro F. Frangi},
  editor       = {S{\'{e}}bastien Ourselin and
                  Leo Joskowicz and
                  Mert R. Sabuncu and
                  G{\"{o}}zde B. {\"{U}}nal and
                  William M. Wells III},
  title        = {Direct Estimation of Wall Shear Stress from Aneurysmal Morphology:
                  {A} Statistical Approach},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2016 - 19th International Conference, Athens, Greece, October 17-21,
                  2016, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {9902},
  pages        = {201--209},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-46726-9\_24},
  doi          = {10.1007/978-3-319-46726-9\_24},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/Sarrami-Foroushani16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/CimenGRTF16,
  author       = {Serkan {\c{C}}imen and
                  Ali Gooya and
                  Nishant Ravikumar and
                  Zeike A. Taylor and
                  Alejandro F. Frangi},
  editor       = {S{\'{e}}bastien Ourselin and
                  Leo Joskowicz and
                  Mert R. Sabuncu and
                  G{\"{o}}zde B. {\"{U}}nal and
                  William M. Wells III},
  title        = {Reconstruction of Coronary Artery Centrelines from X-Ray Angiography
                  Using a Mixture of Student's t-Distributions},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2016 - 19th International Conference, Athens, Greece, October 17-21,
                  2016, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {9902},
  pages        = {291--299},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-46726-9\_34},
  doi          = {10.1007/978-3-319-46726-9\_34},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/CimenGRTF16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/RavikumarGFT16,
  author       = {Nishant Ravikumar and
                  Ali Gooya and
                  Alejandro F. Frangi and
                  Zeike A. Taylor},
  editor       = {Martin A. Styner and
                  Elsa D. Angelini},
  title        = {Robust group-wise rigid registration of point sets using t-mixture
                  model},
  booktitle    = {Medical Imaging 2016: Image Processing, San Diego, California, USA,
                  February 27, 2016},
  series       = {{SPIE} Proceedings},
  volume       = {9784},
  pages        = {97840S},
  publisher    = {{SPIE}},
  year         = {2016},
  url          = {https://doi.org/10.1117/12.2216244},
  doi          = {10.1117/12.2216244},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/RavikumarGFT16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/CimenGF16,
  author       = {Serkan {\c{C}}imen and
                  Ali Gooya and
                  Alejandro F. Frangi},
  editor       = {Martin A. Styner and
                  Elsa D. Angelini},
  title        = {Reconstruction of coronary artery centrelines from X-ray rotational
                  angiography using a probabilistic mixture model},
  booktitle    = {Medical Imaging 2016: Image Processing, San Diego, California, USA,
                  February 27, 2016},
  series       = {{SPIE} Proceedings},
  volume       = {9784},
  pages        = {97843A},
  publisher    = {{SPIE}},
  year         = {2016},
  url          = {https://doi.org/10.1117/12.2217116},
  doi          = {10.1117/12.2217116},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/CimenGF16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2016sashimi,
  editor       = {Sotirios A. Tsaftaris and
                  Ali Gooya and
                  Alejandro F. Frangi and
                  Jerry L. Prince},
  title        = {Simulation and Synthesis in Medical Imaging - First International
                  Workshop, {SASHIMI} 2016, Held in Conjunction with {MICCAI} 2016,
                  Athens, Greece, October 21, 2016, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9968},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-46630-9},
  doi          = {10.1007/978-3-319-46630-9},
  isbn         = {978-3-319-46629-3},
  timestamp    = {Tue, 14 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/2016sashimi.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/ShamekhiBAG15,
  author       = {Sina Shamekhi and
                  Mohammad Hossein Miran Baygi and
                  Bahareh Azarian and
                  Ali Gooya},
  title        = {A novel multi-scale Hessian based spot enhancement filter for two
                  dimensional gel electrophoresis images},
  journal      = {Comput. Biol. Medicine},
  volume       = {66},
  pages        = {154--169},
  year         = {2015},
  url          = {https://doi.org/10.1016/j.compbiomed.2015.07.010},
  doi          = {10.1016/J.COMPBIOMED.2015.07.010},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cbm/ShamekhiBAG15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamis/GooyaDF15,
  author       = {Ali Gooya and
                  Christos Davatzikos and
                  Alejandro F. Frangi},
  title        = {A Bayesian Approach to Sparse Model Selection in Statistical Shape
                  Models},
  journal      = {{SIAM} J. Imaging Sci.},
  volume       = {8},
  number       = {2},
  pages        = {858--887},
  year         = {2015},
  url          = {https://doi.org/10.1137/140982039},
  doi          = {10.1137/140982039},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/siamis/GooyaDF15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/GooyaLASWF15,
  author       = {Ali Gooya and
                  Karim Lekadir and
                  X{\`{e}}nia Alb{\`{a}} and
                  Andrew J. Swift and
                  Jim M. Wild and
                  Alejandro F. Frangi},
  editor       = {S{\'{e}}bastien Ourselin and
                  Daniel C. Alexander and
                  Carl{-}Fredrik Westin and
                  Manuel Jorge Cardoso},
  title        = {Joint Clustering and Component Analysis of Correspondenceless Point
                  Sets: Application to Cardiac Statistical Modeling},
  booktitle    = {Information Processing in Medical Imaging - 24th International Conference,
                  {IPMI} 2015, Sabhal Mor Ostaig, Isle of Skye, UK, June 28 - July 3,
                  2015, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9123},
  pages        = {98--109},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-19992-4\_8},
  doi          = {10.1007/978-3-319-19992-4\_8},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ipmi/GooyaLASWF15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/PintoCGLF15,
  author       = {Catarina Pinto and
                  Serkan {\c{C}}imen and
                  Ali Gooya and
                  Karim Lekadir and
                  Alejandro F. Frangi},
  editor       = {Oscar Camara and
                  Tommaso Mansi and
                  Mihaela Pop and
                  Kawal S. Rhode and
                  Maxime Sermesant and
                  Alistair A. Young},
  title        = {Joint Clustering and Component Analysis of Spatio-Temporal Shape Patterns
                  in Myocardial Infarction},
  booktitle    = {Statistical Atlases and Computational Models of the Heart. Imaging
                  and Modelling Challenges - 6th International Workshop, {STACOM} 2015,
                  Held in Conjunction with {MICCAI} 2015, Munich, Germany, October 9,
                  2015, Revised Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {9534},
  pages        = {171--179},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-28712-6\_19},
  doi          = {10.1007/978-3-319-28712-6\_19},
  timestamp    = {Thu, 16 Mar 2023 20:00:44 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/PintoCGLF15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GooyaMDL13,
  author       = {Ali Gooya and
                  Elaheh Mousavi and
                  Christos Davatzikos and
                  Hongen Liao},
  editor       = {Hongen Liao and
                  Cristian A. Linte and
                  Ken Masamune and
                  Terry M. Peters and
                  Guoyan Zheng},
  title        = {A Bayesian Approach for Construction of Sparse Statistical Shape Models
                  Using Dirichlet Distribution},
  booktitle    = {Augmented Reality Environments for Medical Imaging and Computer-Assisted
                  Interventions - 6th International Workshop, {MIAR} 2013 and 8th International
                  Workshop, {AE-CAI} 2013, Held in Conjunction with {MICCAI} 2013, Nagoya,
                  Japan, September 22, 2013. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8090},
  pages        = {144--152},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-40843-4\_16},
  doi          = {10.1007/978-3-642-40843-4\_16},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/GooyaMDL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmig/GooyaLS12,
  author       = {Ali Gooya and
                  Hongen Liao and
                  Ichiro Sakuma},
  title        = {Generalization of geometrical flux maximizing flow on Riemannian manifolds
                  for improved volumetric blood vessel segmentation},
  journal      = {Comput. Medical Imaging Graph.},
  volume       = {36},
  number       = {6},
  pages        = {474--483},
  year         = {2012},
  url          = {https://doi.org/10.1016/j.compmedimag.2012.04.007},
  doi          = {10.1016/J.COMPMEDIMAG.2012.04.007},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cmig/GooyaLS12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/GooyaPBCBMD12,
  author       = {Ali Gooya and
                  Kilian M. Pohl and
                  Michel Bilello and
                  Luigi Cirillo and
                  George Biros and
                  Elias R. Melhem and
                  Christos Davatzikos},
  title        = {{GLISTR:} Glioma Image Segmentation and Registration},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {31},
  number       = {10},
  pages        = {1941--1954},
  year         = {2012},
  url          = {https://doi.org/10.1109/TMI.2012.2210558},
  doi          = {10.1109/TMI.2012.2210558},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tmi/GooyaPBCBMD12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/GooyaBD11,
  author       = {Ali Gooya and
                  George Biros and
                  Christos Davatzikos},
  title        = {Deformable Registration of Glioma Images Using {EM} Algorithm and
                  Diffusion Reaction Modeling},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {30},
  number       = {2},
  pages        = {375--390},
  year         = {2011},
  url          = {https://doi.org/10.1109/TMI.2010.2078833},
  doi          = {10.1109/TMI.2010.2078833},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/GooyaBD11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/DavatzikosZGC11,
  author       = {Christos Davatzikos and
                  Evangelia I. Zacharaki and
                  Ali Gooya and
                  Vanessa Clark},
  title        = {Multi-parametric analysis and registration of brain tumors: Constructing
                  statistical atlases and diagnostic tools of predictive value},
  booktitle    = {33rd Annual International Conference of the {IEEE} Engineering in
                  Medicine and Biology Society, {EMBC} 2011, Boston, MA, USA, August
                  30 - Sept. 3, 2011},
  pages        = {6979--6981},
  publisher    = {{IEEE}},
  year         = {2011},
  url          = {https://doi.org/10.1109/IEMBS.2011.6091764},
  doi          = {10.1109/IEMBS.2011.6091764},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/embc/DavatzikosZGC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GooyaPBBD11,
  author       = {Ali Gooya and
                  Kilian M. Pohl and
                  Michel Bilello and
                  George Biros and
                  Christos Davatzikos},
  editor       = {Gabor Fichtinger and
                  Anne L. Martel and
                  Terry M. Peters},
  title        = {Joint Segmentation and Deformable Registration of Brain Scans Guided
                  by a Tumor Growth Model},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2011 - 14th International Conference, Toronto, Canada, September 18-22,
                  2011, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {6892},
  pages        = {532--540},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-23629-7\_65},
  doi          = {10.1007/978-3-642-23629-7\_65},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/GooyaPBBD11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/GooyaBD10,
  author       = {Ali Gooya and
                  George Biros and
                  Christos Davatzikos},
  title        = {An {EM} algorithm for brain tumor image registration: {A} tumor growth
                  modeling based approach},
  booktitle    = {{IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR}
                  Workshops 2010, San Francisco, CA, USA, 13-18 June, 2010},
  pages        = {39--46},
  publisher    = {{IEEE} Computer Society},
  year         = {2010},
  url          = {https://doi.org/10.1109/CVPRW.2010.5543440},
  doi          = {10.1109/CVPRW.2010.5543440},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cvpr/GooyaBD10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/BatmanghelichGK10,
  author       = {Nematollah Batmanghelich and
                  Ali Gooya and
                  Stathis Kanterakis and
                  Ben Taskar and
                  Christos Davatzikos},
  title        = {Application of trace-norm and low-rank matrix decomposition for computational
                  anatomy},
  booktitle    = {{IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR}
                  Workshops 2010, San Francisco, CA, USA, 13-18 June, 2010},
  pages        = {146--153},
  publisher    = {{IEEE} Computer Society},
  year         = {2010},
  url          = {https://doi.org/10.1109/CVPRW.2010.5543596},
  doi          = {10.1109/CVPRW.2010.5543596},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cvpr/BatmanghelichGK10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tip/GooyaLMMMD08,
  author       = {Ali Gooya and
                  Hongen Liao and
                  Kiyoshi Matsumiya and
                  Ken Masamune and
                  Yoshitaka Masutani and
                  Takeyoshi Dohi},
  title        = {A Variational Method for Geometric Regularization of Vascular Segmentation
                  in Medical Images},
  journal      = {{IEEE} Trans. Image Process.},
  volume       = {17},
  number       = {8},
  pages        = {1295--1312},
  year         = {2008},
  url          = {https://doi.org/10.1109/TIP.2008.925378},
  doi          = {10.1109/TIP.2008.925378},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tip/GooyaLMMMD08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miar/GooyaDSL08,
  author       = {Ali Gooya and
                  Takeyoshi Dohi and
                  Ichiro Sakuma and
                  Hongen Liao},
  editor       = {Takeyoshi Dohi and
                  Ichiro Sakuma and
                  Hongen Liao},
  title        = {Anisotropic Haralick Edge Detection Scheme with Application to Vessel
                  Segmentation},
  booktitle    = {Medical Imaging and Augmented Reality, 4th International Workshop,
                  {MIAR} 2008, Tokyo, Japan, August 1-2, 2008, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5128},
  pages        = {430--438},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-79982-5\_47},
  doi          = {10.1007/978-3-540-79982-5\_47},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miar/GooyaDSL08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GooyaDSL08,
  author       = {Ali Gooya and
                  Takeyoshi Dohi and
                  Ichiro Sakuma and
                  Hongen Liao},
  editor       = {Dimitris N. Metaxas and
                  Leon Axel and
                  Gabor Fichtinger and
                  G{\'{a}}bor Sz{\'{e}}kely},
  title        = {{R-PLUS:} {A} Riemannian Anisotropic Edge Detection Scheme for Vascular
                  Segmentation},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2008, 11th International Conference, New York, NY, USA, September
                  6-10, 2008, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {5241},
  pages        = {262--269},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-85988-8\_32},
  doi          = {10.1007/978-3-540-85988-8\_32},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/GooyaDSL08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/GooyaLMMD07,
  author       = {Ali Gooya and
                  Hongen Liao and
                  Kiyoshi Matsumiya and
                  Ken Masamune and
                  Takeyoshi Dohi},
  editor       = {Nico Karssemeijer and
                  Boudewijn P. F. Lelieveldt},
  title        = {Effective Statistical Edge Integration Using a Flux Maximizing Scheme
                  for Volumetric Vascular Segmentation in {MRA}},
  booktitle    = {Information Processing in Medical Imaging, 20th International Conference,
                  {IPMI} 2007, Kerkrade, The Netherlands, July 2-6, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4584},
  pages        = {86--97},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-73273-0\_8},
  doi          = {10.1007/978-3-540-73273-0\_8},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ipmi/GooyaLMMD07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/GooyaLMMD07,
  author       = {Ali Gooya and
                  Hongen Liao and
                  Kiyoshi Matsumiya and
                  Ken Masamune and
                  Takeyoshi Dohi},
  title        = {A Shape Induced Anisotropic Flowfor Volumetric Vascular Segmentation
                  in {MRA}},
  booktitle    = {Proceedings of the 2007 {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, Washington, DC, USA, April 12-16, 2007},
  pages        = {664--667},
  publisher    = {{IEEE}},
  year         = {2007},
  url          = {https://doi.org/10.1109/ISBI.2007.356939},
  doi          = {10.1109/ISBI.2007.356939},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/GooyaLMMD07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miar/GooyaLMMD06,
  author       = {Ali Gooya and
                  Hongen Liao and
                  Kiyoshi Matsumiya and
                  Ken Masamune and
                  Takeyoshi Dohi},
  editor       = {Guang{-}Zhong Yang and
                  Tianzi Jiang and
                  Dinggang Shen and
                  Lixu Gu and
                  Jie Yang},
  title        = {Pulsative Flow Segmentation in {MRA} Image Series by {AR} Modeling
                  and {EM} Algorithm},
  booktitle    = {Medical Imaging and Augmented Reality, {MIAR} 2006, Third International
                  Workshop, Shanghai, China, August 17-18, 2006, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4091},
  pages        = {356--363},
  publisher    = {Springer},
  year         = {2006},
  url          = {https://doi.org/10.1007/11812715\_45},
  doi          = {10.1007/11812715\_45},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miar/GooyaLMMD06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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