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ORCIDBibTeX records: Doga Gürsoy
@inproceedings{DBLP:conf/sc/PrinceGSCCPFTS23,
author = {Michael H. Prince and
Doga G{\"{u}}rsoy and
Dina Sheyfer and
Ryan Chard and
Beno{\^{\i}}t C{\^{o}}t{\'{e}} and
Hannah Parraga and
Barbara Frosik and
Jonathan Z. Tischler and
Nicholas Schwarz},
title = {Demonstrating Cross-Facility Data Processing at Scale With Laue Microdiffraction},
booktitle = {Proceedings of the {SC} '23 Workshops of The International Conference
on High Performance Computing, Network, Storage, and Analysis, {SC-W}
2023, Denver, CO, USA, November 12-17, 2023},
pages = {2133--2139},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3624062.3624613},
doi = {10.1145/3624062.3624613},
timestamp = {Wed, 14 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/PrinceGSCCPFTS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spm/GursoyCJ22,
author = {Doga G{\"{u}}rsoy and
Yu{-}chen Karen Chen{-}Wiegart and
Chris Jacobsen},
title = {Lensless X-Ray Nanoimaging: Revolutions and opportunities},
journal = {{IEEE} Signal Process. Mag.},
volume = {39},
number = {1},
pages = {44--54},
year = {2022},
url = {https://doi.org/10.1109/MSP.2021.3122574},
doi = {10.1109/MSP.2021.3122574},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/spm/GursoyCJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tci/MajeeAGB22,
author = {Soumendu Majee and
Selin S. Aslan and
Doga G{\"{u}}rsoy and
Charles A. Bouman},
title = {CodEx: {A} Modular Framework for Joint Temporal De-Blurring and Tomographic
Reconstruction},
journal = {{IEEE} Trans. Computational Imaging},
volume = {8},
pages = {666--678},
year = {2022},
url = {https://doi.org/10.1109/TCI.2022.3197935},
doi = {10.1109/TCI.2022.3197935},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tci/MajeeAGB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tpds/HidayetogluBGRG22,
author = {Mert Hidayetoglu and
Tekin Bi{\c{c}}er and
Simon Garcia de Gonzalo and
Bin Ren and
Doga G{\"{u}}rsoy and
Rajkumar Kettimuthu and
Ian T. Foster and
Wen{-}Mei W. Hwu},
title = {MemXCT: Design, Optimization, Scaling, and Reproducibility of X-Ray
Tomography Imaging},
journal = {{IEEE} Trans. Parallel Distributed Syst.},
volume = {33},
number = {9},
pages = {2014--2031},
year = {2022},
url = {https://doi.org/10.1109/TPDS.2021.3128032},
doi = {10.1109/TPDS.2021.3128032},
timestamp = {Tue, 15 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tpds/HidayetogluBGRG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2205-02397,
author = {Semih Barutcu and
Doga G{\"{u}}rsoy and
Aggelos K. Katsaggelos},
title = {Compressive Ptychography using Deep Image and Generative Priors},
journal = {CoRR},
volume = {abs/2205.02397},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2205.02397},
doi = {10.48550/ARXIV.2205.02397},
eprinttype = {arXiv},
eprint = {2205.02397},
timestamp = {Wed, 11 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2205-02397.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-14392,
author = {Semih Barutcu and
Aggelos K. Katsaggelos and
Doga G{\"{u}}rsoy},
title = {A Deep Generative Approach to Oversampling in Ptychography},
journal = {CoRR},
volume = {abs/2207.14392},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2207.14392},
doi = {10.48550/ARXIV.2207.14392},
eprinttype = {arXiv},
eprint = {2207.14392},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2207-14392.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mlst/AslanLNBLG21,
author = {Selin S. Aslan and
Zhengchun Liu and
Viktor V. Nikitin and
Tekin Bicer and
Sven Leyffer and
Doga G{\"{u}}rsoy},
title = {Joint ptycho-tomography with deep generative priors},
journal = {Mach. Learn. Sci. Technol.},
volume = {2},
number = {4},
pages = {45017},
year = {2021},
url = {https://doi.org/10.1088/2632-2153/ac1d35},
doi = {10.1088/2632-2153/AC1D35},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mlst/AslanLNBLG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tci/NikitinASGZSKGC21,
author = {Viktor V. Nikitin and
Vincent De Andrade and
Azat Slyamov and
Benjamin J. Gould and
Yuepeng Zhang and
Vandana Sampathkumar and
Narayanan Kasthuri and
Doga G{\"{u}}rsoy and
Francesco De Carlo},
title = {Distributed Optimization for Nonrigid Nano-Tomography},
journal = {{IEEE} Trans. Computational Imaging},
volume = {7},
pages = {272--287},
year = {2021},
url = {https://doi.org/10.1109/TCI.2021.3060915},
doi = {10.1109/TCI.2021.3060915},
timestamp = {Mon, 12 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tci/NikitinASGZSKGC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-08288,
author = {Poulami Somanya Ganguly and
Dani{\"{e}}l Maria Pelt and
Doga G{\"{u}}rsoy and
Francesco De Carlo and
Kees Joost Batenburg},
title = {Improving reproducibility in synchrotron tomography using implementation-adapted
filters},
journal = {CoRR},
volume = {abs/2103.08288},
year = {2021},
url = {https://arxiv.org/abs/2103.08288},
eprinttype = {arXiv},
eprint = {2103.08288},
timestamp = {Tue, 23 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2103-08288.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-07575,
author = {Xiaodong Yu and
Viktor V. Nikitin and
Daniel J. Ching and
Selin S. Aslan and
Doga G{\"{u}}rsoy and
Tekin Bicer},
title = {Scalable and accurate multi-GPU based image reconstruction of large-scale
ptychography data},
journal = {CoRR},
volume = {abs/2106.07575},
year = {2021},
url = {https://arxiv.org/abs/2106.07575},
eprinttype = {arXiv},
eprint = {2106.07575},
timestamp = {Tue, 08 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-07575.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2111-06069,
author = {Soumendu Majee and
Selin S. Aslan and
Charles A. Bouman and
Doga G{\"{u}}rsoy},
title = {CodEx: {A} Modular Framework for Joint Temporal De-blurring and Tomographic
Reconstruction},
journal = {CoRR},
volume = {abs/2111.06069},
year = {2021},
url = {https://arxiv.org/abs/2111.06069},
eprinttype = {arXiv},
eprint = {2111.06069},
timestamp = {Tue, 16 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2111-06069.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/BicerNAGKF20,
author = {Tekin Bicer and
Viktor V. Nikitin and
Selin S. Aslan and
Doga G{\"{u}}rsoy and
Rajkumar Kettimuthu and
Ian T. Foster},
title = {Tomographic Reconstruction of Dynamic Features with Streaming Sliding
Subsets},
booktitle = {2nd {IEEE/ACM} Annual Workshop on Extreme-scale Experiment-in-the-Loop
Computing, XLOOP@SC 2020, Atlanta, GA, USA, November 12, 2020},
pages = {8--15},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/XLOOP51963.2020.00007},
doi = {10.1109/XLOOP51963.2020.00007},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/BicerNAGKF20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/HidayetogluBGRA20,
author = {Mert Hidayetoglu and
Tekin Bicer and
Simon Garcia De Gonzalo and
Bin Ren and
Vincent De Andrade and
Doga G{\"{u}}rsoy and
Raj Kettimuthu and
Ian T. Foster and
Wen{-}mei W. Hwu},
editor = {Christine Cuicchi and
Irene Qualters and
William T. Kramer},
title = {Petascale {XCT:} 3D image reconstruction with hierarchical communications
on multi-GPU nodes},
booktitle = {Proceedings of the International Conference for High Performance Computing,
Networking, Storage and Analysis, {SC} 2020, Virtual Event / Atlanta,
Georgia, USA, November 9-19, 2020},
pages = {37},
publisher = {{IEEE/ACM}},
year = {2020},
url = {https://doi.org/10.1109/SC41405.2020.00041},
doi = {10.1109/SC41405.2020.00041},
timestamp = {Wed, 04 May 2022 13:02:27 +0200},
biburl = {https://dblp.org/rec/conf/sc/HidayetogluBGRA20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2008-03375,
author = {Viktor V. Nikitin and
Vincent De Andrade and
Azat Slyamov and
Benjamin J. Gould and
Yuepeng Zhang and
Vandana Sampathkumar and
Narayanan Kasthuri and
Doga G{\"{u}}rsoy and
Francesco De Carlo},
title = {Distributed optimization for nonrigid nano-tomography},
journal = {CoRR},
volume = {abs/2008.03375},
year = {2020},
url = {https://arxiv.org/abs/2008.03375},
eprinttype = {arXiv},
eprint = {2008.03375},
timestamp = {Wed, 31 Mar 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2008-03375.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2009-07226,
author = {Mert Hidayetoglu and
Tekin Bicer and
Simon Garcia De Gonzalo and
Bin Ren and
Vincent De Andrade and
Doga G{\"{u}}rsoy and
Raj Kettimuthu and
Ian T. Foster and
Wen{-}mei W. Hwu},
title = {Petascale {XCT:} 3D Image Reconstruction with Hierarchical Communications
on Multi-GPU Nodes},
journal = {CoRR},
volume = {abs/2009.07226},
year = {2020},
url = {https://arxiv.org/abs/2009.07226},
eprinttype = {arXiv},
eprint = {2009.07226},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2009-07226.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/YooYWGK19,
author = {Seunghwan Yoo and
Xiaogang Yang and
Mark Wolfman and
Doga G{\"{u}}rsoy and
Aggelos K. Katsaggelos},
title = {Sinogram Image Completion for Limited Angle Tomography With Generative
Adversarial Networks},
booktitle = {2019 {IEEE} International Conference on Image Processing, {ICIP} 2019,
Taipei, Taiwan, September 22-25, 2019},
pages = {1252--1256},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/ICIP.2019.8804416},
doi = {10.1109/ICIP.2019.8804416},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icip/YooYWGK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/HidayetogluBGRG19,
author = {Mert Hidayetoglu and
Tekin Bi{\c{c}}er and
Simon Garcia De Gonzalo and
Bin Ren and
Doga G{\"{u}}rsoy and
Rajkumar Kettimuthu and
Ian T. Foster and
Wen{-}mei W. Hwu},
editor = {Michela Taufer and
Pavan Balaji and
Antonio J. Pe{\~{n}}a},
title = {MemXCT: memory-centric X-ray {CT} reconstruction with massive parallelization},
booktitle = {Proceedings of the International Conference for High Performance Computing,
Networking, Storage and Analysis, {SC} 2019, Denver, Colorado, USA,
November 17-19, 2019},
pages = {85:1--85:56},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3295500.3356220},
doi = {10.1145/3295500.3356220},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sc/HidayetogluBGRG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1902-07582,
author = {Zhengchun Liu and
Tekin Bicer and
Rajkumar Kettimuthu and
Doga G{\"{u}}rsoy and
Francesco De Carlo and
Ian T. Foster},
title = {TomoGAN: Low-Dose X-Ray Tomography with Generative Adversarial Networks},
journal = {CoRR},
volume = {abs/1902.07582},
year = {2019},
url = {http://arxiv.org/abs/1902.07582},
eprinttype = {arXiv},
eprint = {1902.07582},
timestamp = {Tue, 21 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1902-07582.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/BicerGKFRAC17,
author = {Tekin Bicer and
Doga G{\"{u}}rsoy and
Rajkumar Kettimuthu and
Ian T. Foster and
Bin Ren and
Vincent De Andrade and
Francesco De Carlo},
title = {Real-Time Data Analysis and Autonomous Steering of Synchrotron Light
Source Experiments},
booktitle = {13th {IEEE} International Conference on e-Science, e-Science 2017,
Auckland, New Zealand, October 24-27, 2017},
pages = {59--68},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/eScience.2017.53},
doi = {10.1109/ESCIENCE.2017.53},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eScience/BicerGKFRAC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/RonaghiTDBGKKB17,
author = {Zahra Ronaghi and
Rollin C. Thomas and
Jack Deslippe and
Stephen Bailey and
Doga G{\"{u}}rsoy and
Theodore Kisner and
Reijo Keskitalo and
Julian Borrill},
title = {Python in the {NERSC} Exascale Science Applications Program for Data},
booktitle = {Proceedings of the 7th Workshop on Python for High-Performance and
Scientific Computing, PyHPC@SC 2017, Denver, CO, USA, November 12,
2017},
pages = {4:1--4:10},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3149869.3149873},
doi = {10.1145/3149869.3149873},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sc/RonaghiTDBGKKB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/RoncalDGKK16,
author = {William R. Gray Roncal and
Eva L. Dyer and
Doga G{\"{u}}rsoy and
Konrad P. K{\"{o}}rding and
Narayanan Kasthuri},
title = {From sample to knowledge: Towards an integrated approach for neuroscience
discovery},
journal = {CoRR},
volume = {abs/1604.03199},
year = {2016},
url = {http://arxiv.org/abs/1604.03199},
eprinttype = {arXiv},
eprint = {1604.03199},
timestamp = {Mon, 10 Dec 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/RoncalDGKK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/DyerRFGXVJKK16,
author = {Eva L. Dyer and
William R. Gray Roncal and
Hugo L. Fernandes and
Doga G{\"{u}}rsoy and
Xianghui Xiao and
Joshua T. Vogelstein and
Chris Jacobsen and
Konrad P. K{\"{o}}rding and
Narayanan Kasthuri},
title = {Quantifying mesoscale neuroanatomy using X-ray microtomography},
journal = {CoRR},
volume = {abs/1604.03629},
year = {2016},
url = {http://arxiv.org/abs/1604.03629},
eprinttype = {arXiv},
eprint = {1604.03629},
timestamp = {Mon, 10 Dec 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/DyerRFGXVJKK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/europar/BicerGKCAF15,
author = {Tekin Bicer and
Doga G{\"{u}}rsoy and
Rajkumar Kettimuthu and
Francesco De Carlo and
Gagan Agrawal and
Ian T. Foster},
editor = {Jesper Larsson Tr{\"{a}}ff and
Sascha Hunold and
Francesco Versaci},
title = {Rapid Tomographic Image Reconstruction via Large-Scale Parallelization},
booktitle = {Euro-Par 2015: Parallel Processing - 21st International Conference
on Parallel and Distributed Computing, Vienna, Austria, August 24-28,
2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9233},
pages = {289--302},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48096-0\_23},
doi = {10.1007/978-3-662-48096-0\_23},
timestamp = {Sun, 12 Nov 2023 02:07:45 +0100},
biburl = {https://dblp.org/rec/conf/europar/BicerGKCAF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/GursoyMAS11,
author = {Doga G{\"{u}}rsoy and
Yasin Mamatjan and
Andy Adler and
Hermann Scharfetter},
title = {Enhancing Impedance Imaging Through Multimodal Tomography},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {58},
number = {11},
pages = {3215--3224},
year = {2011},
url = {https://doi.org/10.1109/TBME.2011.2165714},
doi = {10.1109/TBME.2011.2165714},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tbe/GursoyMAS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/GursoyS09,
author = {Doga G{\"{u}}rsoy and
Hermann Scharfetter},
title = {Optimum Receiver Array Design for Magnetic Induction Tomography},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {56},
number = {5},
pages = {1435--1441},
year = {2009},
url = {https://doi.org/10.1109/TBME.2009.2013936},
doi = {10.1109/TBME.2009.2013936},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tbe/GursoyS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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