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ORCIDBibTeX records: Dmitrij Frishman
@article{DBLP:journals/bib/ZauchaHKKSPRGZF21,
author = {Jan Zaucha and
Michael Heinzinger and
A. Kulandaisamy and
Evans Kataka and
{\'{O}}scar Llorian Salv{\'{a}}dor and
Petr Popov and
Burkhard Rost and
M. Michael Gromiha and
Boris S. Zhorov and
Dmitrij Frishman},
title = {Mutations in transmembrane proteins: diseases, evolutionary insights,
prediction and comparison with globular proteins},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa132},
doi = {10.1093/BIB/BBAA132},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZauchaHKKSPRGZF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoschF21,
author = {Anja M{\"{o}}sch and
Dmitrij Frishman},
title = {TCRpair: prediction of functional pairing between HLA-A*02: 01-restricted
T-cell receptor {\(\alpha\)} and {\(\beta\)} chains},
journal = {Bioinform.},
volume = {37},
number = {21},
pages = {3938--3940},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab573},
doi = {10.1093/BIOINFORMATICS/BTAB573},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoschF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HonigschmidBWF20,
author = {Peter H{\"{o}}nigschmid and
Stephan Breimann and
Martina Weigl and
Dmitrij Frishman},
title = {AllesTM: predicting multiple structural features of transmembrane
proteins},
journal = {{BMC} Bioinform.},
volume = {21},
number = {1},
pages = {242},
year = {2020},
url = {https://doi.org/10.1186/s12859-020-03581-8},
doi = {10.1186/S12859-020-03581-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HonigschmidBWF20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KulandaisamyPST18,
author = {A. Kulandaisamy and
S. Binny Priya and
R. Sakthivel and
Svetlana Tarnovskaya and
Ilya Bizin and
Peter H{\"{o}}nigschmid and
Dmitrij Frishman and
M. Michael Gromiha},
title = {MutHTP: mutations in human transmembrane proteins},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2325--2326},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty054},
doi = {10.1093/BIOINFORMATICS/BTY054},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KulandaisamyPST18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LochelRFH18,
author = {Hannah F. L{\"{o}}chel and
Mona Riemenschneider and
Dmitrij Frishman and
Dominik Heider},
title = {{SCOTCH:} subtype {A} coreceptor tropism classification in {HIV-1}},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2575--2580},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty170},
doi = {10.1093/BIOINFORMATICS/BTY170},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LochelRFH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/QiMJLF18,
author = {Fei Qi and
Magdalena Motz and
Kirsten Jung and
J{\"{u}}rgen Lassak and
Dmitrij Frishman},
title = {Evolutionary analysis of polyproline motifs in Escherichia coli reveals
their regulatory role in translation},
journal = {PLoS Comput. Biol.},
volume = {14},
number = {2},
year = {2018},
url = {https://doi.org/10.1371/journal.pcbi.1005987},
doi = {10.1371/JOURNAL.PCBI.1005987},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/QiMJLF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JaravineRSF17,
author = {Victor Jaravine and
Silke Raffegerst and
Dolores J. Schendel and
Dmitrij Frishman},
title = {Assessment of cancer and virus antigens for cross-reactivity in human
tissues},
journal = {Bioinform.},
volume = {33},
number = {1},
pages = {104--111},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btw567},
doi = {10.1093/BIOINFORMATICS/BTW567},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JaravineRSF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaaseRSF15,
author = {Kerstin Haase and
Silke Raffegerst and
Dolores J. Schendel and
Dmitrij Frishman},
title = {Expitope: a web server for epitope expression},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1854--1856},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv068},
doi = {10.1093/BIOINFORMATICS/BTV068},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaaseRSF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KristensenSFK15,
author = {David M. Kristensen and
Usman Saeed and
Dmitrij Frishman and
Eugene V. Koonin},
title = {A census of {\(\alpha\)}-helical membrane proteins in double-stranded
{DNA} viruses infecting bacteria and archaea},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {380:1--380:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0817-4},
doi = {10.1186/S12859-015-0817-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KristensenSFK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarzBDFFHHMRST14,
author = {Manja Marz and
Niko Beerenwinkel and
Christian Drosten and
Markus Fricke and
Dmitrij Frishman and
Ivo L. Hofacker and
Dieter Hoffmann and
Martin Middendorf and
Thomas Rattei and
Peter F. Stadler and
Armin T{\"{o}}pfer},
title = {Challenges in {RNA} virus bioinformatics},
journal = {Bioinform.},
volume = {30},
number = {13},
pages = {1793--1799},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu105},
doi = {10.1093/BIOINFORMATICS/BTU105},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarzBDFFHHMRST14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlohmFSGWRF14,
author = {Philipp Blohm and
Goar Frishman and
Pawel Smialowski and
Florian Goebels and
Benedikt Wachinger and
Andreas Ruepp and
Dmitrij Frishman},
title = {Negatome 2.0: a database of non-interacting proteins derived by literature
mining, manual annotation and protein structure analysis},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {396--400},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1079},
doi = {10.1093/NAR/GKT1079},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlohmFSGWRF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bigdata/KolkerOMHAAABCC13,
author = {Eugene Kolker and
Vural {\"{O}}zdemir and
Lennart Martens and
William Hancock and
Gordon A. Anderson and
Nathaniel Anderson and
Sukru Aynacioglu and
Ancha V. Baranova and
Shawn R. Campagna and
Rui Chen and
John Choiniere and
Stephen P. Dearth and
Wu{-}Chun Feng and
Lynnette Ferguson and
Geoffrey C. Fox and
Dmitrij Frishman and
Robert Grossman and
Allison P. Heath and
Roger Higdon and
Mara H. Hutz and
Imre Janko and
Lihua Jiang and
Sanjay Joshi and
Alexander E. Kel and
Joseph W. Kemnitz and
Isaac S. Kohane and
Natali Kolker and
Doron Lancet and
Elaine Lee and
Weizhong Li and
Andrey Lisitsa and
Adrian Llerena and
Courtney MacNealy{-}Koch and
Jean{-}Claude Marshall and
Paola Masuzzo and
Amanda May and
George Mias and
Matthew E. Monroe and
Elizabeth Montague and
Sean D. Mooney and
Alexey I. Nesvizhskii and
Santosh Noronha and
Gilbert S. Omenn and
Harsha Rajasimha and
Preveen Ramamoorthy and
Jerry Sheehan and
Larry Smarr and
Charles V. Smith and
Todd Smith and
Michael Snyder and
Srikanth Rapole and
Sanjeeva Srivastava and
Larissa Stanberry and
Elizabeth Stewart and
Stefano Toppo and
Peter Uetz and
Kenneth Verheggen and
Brynn H. Voy and
Louise Warnich and
Steven W. Wilhelm and
Gregory Yandl},
title = {Toward More Transparent and Reproducible Omics Studies Through a Common
Metadata Checklist and Data Publications},
journal = {Big Data},
volume = {1},
number = {4},
pages = {196--201},
year = {2013},
url = {https://doi.org/10.1089/big.2013.0039},
doi = {10.1089/BIG.2013.0039},
timestamp = {Tue, 20 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bigdata/KolkerOMHAAABCC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GoebelsF13,
author = {Florian Goebels and
Dmitrij Frishman},
title = {Prediction of protein interaction types based on sequence and network
features},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S5},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S5},
doi = {10.1186/1752-0509-7-S6-S5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GoebelsF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IvankovBHDHKFL13,
author = {Dmitry N. Ivankov and
Natalya S. Bogatyreva and
Peter H{\"{o}}nigschmid and
Bastian Dislich and
Sebastian Hogl and
Peer{-}Hendrik Kuhn and
Dmitrij Frishman and
Stefan F. Lichtenthaler},
title = {{QARIP:} a web server for quantitative proteomic analysis of regulated
intramembrane proteolysis},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {459--464},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt436},
doi = {10.1093/NAR/GKT436},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/IvankovBHDHKFL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChursovKBFS13,
author = {Andrey Chursov and
Sebastian J. Kopetzky and
Gennady Bocharov and
Dmitrij Frishman and
Alexander Shneider},
title = {RNAtips: analysis of temperature-induced changes of {RNA} secondary
structure},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {486--491},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt486},
doi = {10.1093/NAR/GKT486},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChursovKBFS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/TyanovaCO0F13,
author = {Stefka Tyanova and
J{\"{u}}rgen Cox and
Jesper V. Olsen and
Matthias Mann and
Dmitrij Frishman},
title = {Phosphorylation Variation during the Cell Cycle Scales with Structural
Propensities of Proteins},
journal = {PLoS Comput. Biol.},
volume = {9},
number = {1},
year = {2013},
url = {https://doi.org/10.1371/journal.pcbi.1002842},
doi = {10.1371/JOURNAL.PCBI.1002842},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/TyanovaCO0F13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MewesRTRWFSSMSA11,
author = {Hans{-}Werner Mewes and
Andreas Ruepp and
Fabian J. Theis and
Thomas Rattei and
Mathias C. Walter and
Dmitrij Frishman and
Karsten Suhre and
Manuel Spannagl and
Klaus F. X. Mayer and
Volker St{\"{u}}mpflen and
Alexey V. Antonov},
title = {{MIPS:} curated databases and comprehensive secondary data resources
in 2010},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {220--224},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1157},
doi = {10.1093/NAR/GKQ1157},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MewesRTRWFSSMSA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LuoPVF11,
author = {Qibin Luo and
Philipp Pagel and
Baiba Vilne and
Dmitrij Frishman},
title = {{DIMA} 3.0: Domain Interaction Map},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {724--729},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1200},
doi = {10.1093/NAR/GKQ1200},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LuoPVF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmialowskiFK10,
author = {Pawel Smialowski and
Dmitrij Frishman and
Stefan Kramer},
title = {Pitfalls of supervised feature selection},
journal = {Bioinform.},
volume = {26},
number = {3},
pages = {440--443},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btp621},
doi = {10.1093/BIOINFORMATICS/BTP621},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmialowskiFK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SturmHLF10,
author = {Martin Sturm and
Michael Hackenberg and
David Langenberger and
Dmitrij Frishman},
title = {TargetSpy: a supervised machine learning approach for microRNA target
prediction},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {292},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-292},
doi = {10.1186/1471-2105-11-292},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SturmHLF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SmialowskiPWBDFFMRFR10,
author = {Pawel Smialowski and
Philipp Pagel and
Philip Wong and
Barbara Brauner and
Irmtraud Dunger and
Gisela Fobo and
Goar Frishman and
Corinna Montrone and
Thomas Rattei and
Dmitrij Frishman and
Andreas Ruepp},
title = {The Negatome database: a reference set of non-interacting protein
pairs},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {540--544},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp1026},
doi = {10.1093/NAR/GKP1026},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SmialowskiPWBDFFMRFR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KowarschFFP10,
author = {Andreas Kowarsch and
Angelika Fuchs and
Dmitrij Frishman and
Philipp Pagel},
title = {Correlated Mutations: {A} Hallmark of Phenotypic Amino Acid Substitutions},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {9},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1000923},
doi = {10.1371/JOURNAL.PCBI.1000923},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/KowarschFFP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WalterRAGMNKTWVPJMF09,
author = {Mathias C. Walter and
Thomas Rattei and
Roland Arnold and
Ulrich G{\"{u}}ldener and
Martin M{\"{u}}nsterk{\"{o}}tter and
Karamfilka Nenova and
Gabi Kastenm{\"{u}}ller and
Patrick Tischler and
Andreas W{\"{o}}lling and
Andreas Volz and
Norbert Pongratz and
Ralf Jost and
Hans{-}Werner Mewes and
Dmitrij Frishman},
title = {{PEDANT} covers all complete RefSeq genomes},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {408--411},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn749},
doi = {10.1093/NAR/GKN749},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WalterRAGMNKTWVPJMF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MewesDFGMMMRSSR08,
author = {Hans{-}Werner Mewes and
Sabine Dietmann and
Dmitrij Frishman and
Richard Gregory and
Gertrud Mannhaupt and
Klaus F. X. Mayer and
Martin M{\"{u}}nsterk{\"{o}}tter and
Andreas Ruepp and
Manuel Spannagl and
Volker St{\"{u}}mpflen and
Thomas Rattei},
title = {{MIPS:} analysis and annotation of genome information in 2007},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {196--201},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm980},
doi = {10.1093/NAR/GKM980},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MewesDFGMMMRSSR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PagelOTSSF08,
author = {Philipp Pagel and
Matthias Oesterheld and
Oksana Tovstukhina and
Normann Strack and
Volker St{\"{u}}mpflen and
Dmitrij Frishman},
title = {{DIMA} 2.0 - predicted and known domain interactions},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {651--655},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm996},
doi = {10.1093/NAR/GKM996},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PagelOTSSF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmialowskiMMGHF07,
author = {Pawel Smialowski and
Antonio J. Martin{-}Galiano and
Aleksandra Mikolajka and
Tobias Girschick and
Tad A. Holak and
Dmitrij Frishman},
title = {Protein solubility: sequence based prediction and experimental verification},
journal = {Bioinform.},
volume = {23},
number = {19},
pages = {2536--2542},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btl623},
doi = {10.1093/BIOINFORMATICS/BTL623},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmialowskiMMGHF07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FuchsMKFBF07,
author = {Angelika Fuchs and
Antonio J. Martin{-}Galiano and
Matan Kalman and
Sarel Jacob Fleishman and
Nir Ben{-}Tal and
Dmitrij Frishman},
title = {Co-evolving residues in membrane proteins},
journal = {Bioinform.},
volume = {23},
number = {24},
pages = {3312--3319},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm515},
doi = {10.1093/BIOINFORMATICS/BTM515},
timestamp = {Thu, 15 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FuchsMKFBF07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArtamonovaFF07,
author = {Irena I. Artamonova and
Goar Frishman and
Dmitrij Frishman},
title = {Applying negative rule mining to improve genome annotation},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-261},
doi = {10.1186/1471-2105-8-261},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ArtamonovaFF07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RileySAWVHMF07,
author = {M. Louise Riley and
Thorsten Schmidt and
Irena I. Artamonova and
Christian Wagner and
Andreas Volz and
Klaus Heumann and
Hans{-}Werner Mewes and
Dmitrij Frishman},
title = {{PEDANT} genome database: 10 years online},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {354--357},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl1005},
doi = {10.1093/NAR/GKL1005},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RileySAWVHMF07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PagelOSF06,
author = {Philipp Pagel and
Matthias Oesterheld and
Volker St{\"{u}}mpflen and
Dmitrij Frishman},
title = {The {DIMA} web resource - exploring the protein domain network},
journal = {Bioinform.},
volume = {22},
number = {8},
pages = {997--998},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl050},
doi = {10.1093/BIOINFORMATICS/BTL050},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PagelOSF06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchmidtF06,
author = {Thorsten Schmidt and
Dmitrij Frishman},
title = {{PROMPT:} a protein mapping and comparison tool},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {331},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-331},
doi = {10.1186/1471-2105-7-331},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchmidtF06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MewesFMMNPRORS06,
author = {Hans{-}Werner Mewes and
Dmitrij Frishman and
Klaus F. X. Mayer and
Martin M{\"{u}}nsterk{\"{o}}tter and
Octave Noubibou and
Philipp Pagel and
Thomas Rattei and
Matthias Oesterheld and
Andreas Ruepp and
Volker St{\"{u}}mpflen},
title = {{MIPS:} analysis and annotation of proteins from whole genomes in
2005},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {169--172},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj148},
doi = {10.1093/NAR/GKJ148},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MewesFMMNPRORS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RueppDOBDFFMSWRPRFSTOSM06,
author = {Andreas Ruepp and
Octave Noubibou Doudieu and
Jos van den Oever and
Barbara Brauner and
Irmtraud Dunger{-}Kaltenbach and
Gisela Fobo and
Goar Frishman and
Corinna Montrone and
Christine Skornia and
Steffi Wanka and
Thomas Rattei and
Philipp Pagel and
M. Louise Riley and
Dmitrij Frishman and
Dimitrij Surmeli and
Igor V. Tetko and
Matthias Oesterheld and
Volker St{\"{u}}mpflen and
Hans{-}Werner Mewes},
title = {The Mouse Functional Genome Database (MfunGD): functional annotation
of proteins in the light of their cellular context},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {568--571},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj074},
doi = {10.1093/NAR/GKJ074},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RueppDOBDFFMSWRPRFSTOSM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/WongF06,
author = {Philip Wong and
Dmitrij Frishman},
title = {Fold Designability, Distribution, and Disease},
journal = {PLoS Comput. Biol.},
volume = {2},
number = {5},
year = {2006},
url = {https://doi.org/10.1371/journal.pcbi.0020040},
doi = {10.1371/JOURNAL.PCBI.0020040},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/WongF06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PagelKOBDFMMSMRF05,
author = {Philipp Pagel and
Stefan Kovac and
Matthias Oesterheld and
Barbara Brauner and
Irmtraud Dunger{-}Kaltenbach and
Goar Frishman and
Corinna Montrone and
Pekka Mark and
Volker St{\"{u}}mpflen and
Hans{-}Werner Mewes and
Andreas Ruepp and
Dmitrij Frishman},
title = {The {MIPS} mammalian protein?Cprotein interaction database},
journal = {Bioinform.},
volume = {21},
number = {6},
pages = {832--834},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti115},
doi = {10.1093/BIOINFORMATICS/BTI115},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PagelKOBDFMMSMRF05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BorodovskyRF05,
author = {Mark Borodovsky and
Andrey Rzhetsky and
Dmitrij Frishman},
title = {The Fifth Georgia Tech - Oak Ridge National Laboratory International
Conference in Bioinformatics: \emph{in silico} Biology, Computational
Genomics and Evolutionary Biology},
journal = {Bioinform.},
volume = {21},
number = {{S3}},
pages = {1},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1207},
doi = {10.1093/BIOINFORMATICS/BTI1207},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BorodovskyRF05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArtamonovaFGF05,
author = {Irena I. Artamonova and
Goar Frishman and
Mikhail S. Gelfand and
Dmitrij Frishman},
title = {Mining sequence annotation databanks for association patterns},
journal = {Bioinform.},
volume = {21},
number = {{S3}},
pages = {57},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1206},
doi = {10.1093/BIOINFORMATICS/BTI1206},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArtamonovaFGF05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NeverovANFGM05,
author = {A. D. Neverov and
Irena I. Artamonova and
Ramil N. Nurtdinov and
Dmitrij Frishman and
Mikhail S. Gelfand and
Andrey A. Mironov},
title = {Alternative splicing and protein function},
journal = {{BMC} Bioinform.},
volume = {6},
pages = {266},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-266},
doi = {10.1186/1471-2105-6-266},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NeverovANFGM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RileySWMF05,
author = {M. Louise Riley and
Thorsten Schmidt and
Christian Wagner and
Hans{-}Werner Mewes and
Dmitrij Frishman},
title = {The {PEDANT} genome database in 2005},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {308--310},
year = {2005},
url = {https://doi.org/10.1093/nar/gki019},
doi = {10.1093/NAR/GKI019},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RileySWMF05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OffmanNGF04,
author = {Marc N. Offman and
Ramil N. Nurtdinov and
Mikhail S. Gelfand and
Dmitrij Frishman},
title = {No statistical support for correlation between the positions of protein
interaction sites and alternatively spliced regions},
journal = {{BMC} Bioinform.},
volume = {5},
pages = {41},
year = {2004},
url = {https://doi.org/10.1186/1471-2105-5-41},
doi = {10.1186/1471-2105-5-41},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OffmanNGF04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MewesAAFGMMPSSWR04,
author = {Hans{-}Werner Mewes and
Clara Amid and
Roland Arnold and
Dmitrij Frishman and
Ulrich G{\"{u}}ldener and
Gertrud Mannhaupt and
Martin M{\"{u}}nsterk{\"{o}}tter and
Philipp Pagel and
Normann Strack and
Volker St{\"{u}}mpflen and
Jens Warfsmann and
Andreas Ruepp},
title = {{MIPS:} analysis and annotation of proteins from whole genomes},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {41--44},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh092},
doi = {10.1093/NAR/GKH092},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MewesAAFGMMPSSWR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HeinigF04,
author = {Matthias Heinig and
Dmitrij Frishman},
title = {{STRIDE:} a web server for secondary structure assignment from known
atomic coordinates of proteins},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Web-Server-Issue},
pages = {500--502},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh429},
doi = {10.1093/NAR/GKH429},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HeinigF04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WongKFH03,
author = {Philip Wong and
Grigory Kolesov and
Dmitrij Frishman and
Walid A. Houry},
title = {Phylogenetic Web Profiler},
journal = {Bioinform.},
volume = {19},
number = {6},
pages = {782--783},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg064},
doi = {10.1093/BIOINFORMATICS/BTG064},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WongKFH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FrishmanMKKKZGGKAVWFHM03,
author = {Dmitrij Frishman and
Martin Mokrejs and
Denis Kosykh and
Gabi Kastenm{\"{u}}ller and
Grigory Kolesov and
Igor Zubrzycki and
Christian Gruber and
Birgitta Geier and
Andreas Kaps and
Kaj Albermann and
Andreas Volz and
Christian Wagner and
Matthias Fellenberg and
Klaus Heumann and
Hans{-}Werner Mewes},
title = {The {PEDANT} genome database},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {207--211},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg005},
doi = {10.1093/NAR/GKG005},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FrishmanMKKKZGGKAVWFHM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/PagelMF03,
author = {Philipp Pagel and
Hans{-}Werner Mewes and
Dmitrij Frishman},
title = {Conservation of protein-protein interactions among Ascomycota species},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 2003,
October 12-14, 2003, Neuherberg/Garching near Munich, Germany},
pages = {111--115},
year = {2003},
timestamp = {Tue, 15 Mar 2005 13:11:15 +0100},
biburl = {https://dblp.org/rec/conf/gcb/PagelMF03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KolesovMF02,
author = {Grigory Kolesov and
Hans{-}Werner Mewes and
Dmitrij Frishman},
title = {SNAPper: gene order predicts gene function},
journal = {Bioinform.},
volume = {18},
number = {7},
pages = {1017--1019},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.7.1017},
doi = {10.1093/BIOINFORMATICS/18.7.1017},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KolesovMF02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MewesFGMMMMMRW03,
author = {Hans{-}Werner Mewes and
Dmitrij Frishman and
Ulrich G{\"{u}}ldener and
Gertrud Mannhaupt and
Klaus F. X. Mayer and
Martin Mokrejs and
Burkhard Morgenstern and
Martin M{\"{u}}nsterk{\"{o}}tter and
Stephen Rudd and
B. Weil},
title = {{MIPS:} a database for genomes and protein sequences},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {31--34},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.31},
doi = {10.1093/NAR/30.1.31},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MewesFGMMMMMRW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FrishmanAHHMZM01,
author = {Dmitrij Frishman and
Kaj Albermann and
Jean Hani and
Klaus Heumann and
Agnes Metanomski and
Alfred Zollner and
Hans{-}Werner Mewes},
title = {Functional and structural genomics using {PEDANT}},
journal = {Bioinform.},
volume = {17},
number = {1},
pages = {44--57},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.1.44},
doi = {10.1093/BIOINFORMATICS/17.1.44},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FrishmanAHHMZM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MewesFGGHKLMPSSW00,
author = {Hans{-}Werner Mewes and
Dmitrij Frishman and
Christian Gruber and
Birgitta Geier and
Dirk Haase and
Andreas Kaps and
Kai Lemcke and
Gertrud Mannhaupt and
Friedhelm Pfeiffer and
Christine M. Sch{\"{u}}ller and
S. Stocker and
B. Weil},
title = {{MIPS:} a database for genomes and protein sequences},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {37--40},
year = {2000},
url = {https://doi.org/10.1093/nar/28.1.37},
doi = {10.1093/NAR/28.1.37},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MewesFGGHKLMPSSW00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MewesHKMPSF99,
author = {Hans{-}Werner Mewes and
Klaus Heumann and
Andreas Kaps and
Klaus F. X. Mayer and
Friedhelm Pfeiffer and
S. Stocker and
Dmitrij Frishman},
title = {{MIPS:} a database for genomes and protein sequences},
journal = {Nucleic Acids Res.},
volume = {27},
number = {1},
pages = {44--48},
year = {1999},
url = {https://doi.org/10.1093/nar/27.1.44},
doi = {10.1093/NAR/27.1.44},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MewesHKMPSF99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FrishmanHLM98,
author = {Dmitrij Frishman and
Klaus Heumann and
Arthur M. Lesk and
Hans{-}Werner Mewes},
title = {Comprehensive, comprehensible, distributed and intelligent databases:
current status},
journal = {Bioinform.},
volume = {14},
number = {7},
pages = {551--561},
year = {1998},
url = {https://doi.org/10.1093/bioinformatics/14.7.551},
doi = {10.1093/BIOINFORMATICS/14.7.551},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FrishmanHLM98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MewesHPF98,
author = {Hans{-}Werner Mewes and
Jean Hani and
Friedhelm Pfeiffer and
Dmitrij Frishman},
title = {{MIPS:} a database for protein sequences and complete genomes},
journal = {Nucleic Acids Res.},
volume = {26},
number = {1},
pages = {33--37},
year = {1998},
url = {https://doi.org/10.1093/nar/26.1.33},
doi = {10.1093/NAR/26.1.33},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MewesHPF98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/FrishmanMMG98,
author = {Dmitrij Frishman and
Andrey A. Mironov and
Hans{-}Werner Mewes and
Mikhail S. Gelfand},
title = {Combining diverse evidence for gene recognition in completely sequenced
bacterial genomes},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
University of Cologne, Germany, October 1998},
publisher = {Oxford University Press},
year = {1998},
timestamp = {Fri, 02 Aug 2019 15:48:14 +0200},
biburl = {https://dblp.org/rec/conf/gcb/FrishmanMMG98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/AlbermannBFGHHMZM97,
author = {Kaj Albermann and
M. B{\"{a}}hr and
Dmitrij Frishman and
A. Glei{\ss}ner and
Jean Hani and
Klaus Heumann and
Andreas Maierl and
Alfred Zollner and
Hans{-}Werner Mewes},
title = {The {MIPS} Yeast Genome Database},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1997,
Kloster Irsee, Bavaria, Germany, September 1997},
pages = {121--122},
publisher = {Oxford University Press},
year = {1997},
timestamp = {Fri, 02 Aug 2019 15:48:15 +0200},
biburl = {https://dblp.org/rec/conf/gcb/AlbermannBFGHHMZM97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/KapsHFBM96,
author = {Andreas Kaps and
Klaus Heumann and
Dmitrij Frishman and
M. B{\"{a}}hr and
Hans{-}Werner Mewes},
editor = {Ralf Hofest{\"{a}}dt and
Thomas Lengauer and
Markus L{\"{o}}ffler and
Dietmar Schomburg},
title = {Visualization and Analysis of the Complete Yeast Genome},
booktitle = {Bioinformatics, German Conference on Bioinformatics, Leipzig, Germany,
September 30 - October 2, 1996, Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {1278},
pages = {178--188},
publisher = {Springer},
year = {1996},
url = {https://doi.org/10.1007/BFb0033216},
doi = {10.1007/BFB0033216},
timestamp = {Tue, 14 May 2019 10:00:42 +0200},
biburl = {https://dblp.org/rec/conf/gcb/KapsHFBM96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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