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ORCIDBibTeX records: Tomás Flouri
@article{DBLP:journals/bioinformatics/KozlovDFMS19,
author = {Alexey M. Kozlov and
Diego Darriba and
Tom{\'{a}}s Flouri and
Benoit Morel and
Alexandros Stamatakis},
title = {RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood
phylogenetic inference},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4453--4455},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz305},
doi = {10.1093/BIOINFORMATICS/BTZ305},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KozlovDFMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KapliLZKPSF17,
author = {Paschalia Kapli and
Sarah Lutteropp and
Jiajie Zhang and
Kassian Kobert and
Pavlos Pavlidis and
Alexandros Stamatakis and
Tom{\'{a}}s Flouri},
title = {Multi-rate Poisson tree processes for single-locus species delimitation
under maximum likelihood and Markov chain Monte Carlo},
journal = {Bioinform.},
volume = {33},
number = {11},
pages = {1630--1638},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx025},
doi = {10.1093/BIOINFORMATICS/BTX025},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KapliLZKPSF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpcc/MorelFS17,
author = {Benoit Morel and
Tom{\'{a}}s Flouri and
Alexandros Stamatakis},
title = {A Novel Heuristic for Data Distribution in Massively Parallel Phylogenetic
Inference Using Site Repeats},
booktitle = {19th {IEEE} International Conference on High Performance Computing
and Communications; 15th {IEEE} International Conference on Smart
City; 3rd {IEEE} International Conference on Data Science and Systems,
HPCC/SmartCity/DSS 2017, Bangkok, Thailand, December 18-20, 2017},
pages = {81--88},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/HPCC-SmartCity-DSS.2017.11},
doi = {10.1109/HPCC-SMARTCITY-DSS.2017.11},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hpcc/MorelFS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/17/FlouriZCKS17,
author = {Tom{\'{a}}s Flouri and
Jiajie Zhang and
Lucas Czech and
Kassian Kobert and
Alexandros Stamatakis},
editor = {Mourad Elloumi},
title = {An Efficient Approach to Merging Paired-End Reads and Incorporation
of Uncertainties},
booktitle = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
and Applications},
pages = {299--325},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-59826-0\_13},
doi = {10.1007/978-3-319-59826-0\_13},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/17/FlouriZCKS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/SchollKFS16,
author = {Constantin Scholl and
Kassian Kobert and
Tom{\'{a}}s Flouri and
Alexandros Stamatakis},
title = {The Divisible Load Balance Problem with Shared Cost and Its Application
to Phylogenetic Inference},
booktitle = {2016 {IEEE} International Parallel and Distributed Processing Symposium
Workshops, {IPDPS} Workshops 2016, Chicago, IL, USA, May 23-27, 2016},
pages = {408--417},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/IPDPSW.2016.38},
doi = {10.1109/IPDPSW.2016.38},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ipps/SchollKFS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kse/HoangVFSHM16,
author = {Diep Thi Hoang and
Le Sy Vinh and
Tom{\'{a}}s Flouri and
Alexandros Stamatakis and
Arndt von Haeseler and
Bui Quang Minh},
editor = {Minh Le Nguyen and
Le Sy Vinh and
Lam Thu Bui and
Van{-}Giang Nguyen and
Yew{-}Soon Ong and
Keiji Hirata},
title = {A new phylogenetic tree sampling method for maximum parsimony bootstrapping
and proof-of-concept implementation},
booktitle = {2016 Eighth International Conference on Knowledge and Systems Engineering,
{KSE} 2016, Hanoi, Vietnam, October 6-8, 2016},
pages = {1--6},
publisher = {{IEEE}},
year = {2016},
url = {https://doi.org/10.1109/KSE.2016.7758020},
doi = {10.1109/KSE.2016.7758020},
timestamp = {Fri, 17 Nov 2023 08:06:20 +0100},
biburl = {https://dblp.org/rec/conf/kse/HoangVFSHM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ipl/FlouriGKU15,
author = {Tom{\'{a}}s Flouri and
Emanuele Giaquinta and
Kassian Kobert and
Esko Ukkonen},
title = {Longest common substrings with k mismatches},
journal = {Inf. Process. Lett.},
volume = {115},
number = {6-8},
pages = {643--647},
year = {2015},
url = {https://doi.org/10.1016/j.ipl.2015.03.006},
doi = {10.1016/J.IPL.2015.03.006},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ipl/FlouriGKU15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BartonFIP15,
author = {Carl Barton and
Tom{\'{a}}s Flouri and
Costas S. Iliopoulos and
Solon P. Pissis},
title = {Global and local sequence alignment with a bounded number of gaps},
journal = {Theor. Comput. Sci.},
volume = {582},
pages = {1--16},
year = {2015},
url = {https://doi.org/10.1016/j.tcs.2015.03.016},
doi = {10.1016/J.TCS.2015.03.016},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcs/BartonFIP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangKFS14,
author = {Jiajie Zhang and
Kassian Kobert and
Tom{\'{a}}s Flouri and
Alexandros Stamatakis},
title = {{PEAR:} a fast and accurate Illumina Paired-End reAd mergeR},
journal = {Bioinform.},
volume = {30},
number = {5},
pages = {614--620},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btt593},
doi = {10.1093/BIOINFORMATICS/BTT593},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangKFS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KobertFAS14,
author = {Kassian Kobert and
Tom{\'{a}}s Flouri and
Andre J. Aberer and
Alexandros Stamatakis},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {The Divisible Load Balance Problem and Its Application to Phylogenetic
Inference},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {204--216},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_16},
doi = {10.1007/978-3-662-44753-6\_16},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KobertFAS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/FlouriGKU14,
author = {Tom{\'{a}}s Flouri and
Emanuele Giaquinta and
Kassian Kobert and
Esko Ukkonen},
title = {Longest common substrings with k mismatches},
journal = {CoRR},
volume = {abs/1409.1694},
year = {2014},
url = {http://arxiv.org/abs/1409.1694},
eprinttype = {arXiv},
eprint = {1409.1694},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/FlouriGKU14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AlachiotisBFPS13,
author = {Nikolaos Alachiotis and
Simon A. Berger and
Tom{\'{a}}s Flouri and
Solon P. Pissis and
Alexandros Stamatakis},
title = {libgapmis: extending short-read alignments},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-11}},
pages = {S4},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S11-S4},
doi = {10.1186/1471-2105-14-S11-S4},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AlachiotisBFPS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jda/ChristouFIJMPZ13,
author = {Michalis Christou and
Tom{\'{a}}s Flouri and
Costas S. Iliopoulos and
Jan Janousek and
Borivoj Melichar and
Solon P. Pissis and
Jan Zd{\'{a}}rek},
title = {Tree template matching in unranked ordered trees},
journal = {J. Discrete Algorithms},
volume = {20},
pages = {51--60},
year = {2013},
url = {https://doi.org/10.1016/j.jda.2013.02.001},
doi = {10.1016/J.JDA.2013.02.001},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jda/ChristouFIJMPZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/FlouriIKPPST13,
author = {Tom{\'{a}}s Flouri and
Costas S. Iliopoulos and
Tomasz Kociumaka and
Solon P. Pissis and
Simon J. Puglisi and
W. F. Smyth and
Wojciech Tyczynski},
title = {Enhanced string covering},
journal = {Theor. Comput. Sci.},
volume = {506},
pages = {102--114},
year = {2013},
url = {https://doi.org/10.1016/j.tcs.2013.08.013},
doi = {10.1016/J.TCS.2013.08.013},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcs/FlouriIKPPST13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BartonFIP13,
author = {Carl Barton and
Tom{\'{a}}s Flouri and
Costas S. Iliopoulos and
Solon P. Pissis},
editor = {Jing Gao},
title = {GapsMis: flexible sequence alignment with a bounded number of gaps},
booktitle = {{ACM} Conference on Bioinformatics, Computational Biology and Biomedical
Informatics. {ACM-BCB} 2013, Washington, DC, USA, September 22-25,
2013},
pages = {402},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2506583.2506584},
doi = {10.1145/2506583.2506584},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/BartonFIP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/Izquierdo-CarrascoABFPS13,
author = {Fernando Izquierdo{-}Carrasco and
Nikolaos Alachiotis and
Simon A. Berger and
Tom{\'{a}}s Flouri and
Solon P. Pissis and
Alexandros Stamatakis},
title = {A Generic Vectorization Scheme and a {GPU} Kernel for the Phylogenetic
Likelihood Library},
booktitle = {2013 {IEEE} International Symposium on Parallel {\&} Distributed
Processing, Workshops and Phd Forum, Cambridge, MA, USA, May 20-24,
2013},
pages = {530--538},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/IPDPSW.2013.103},
doi = {10.1109/IPDPSW.2013.103},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ipps/Izquierdo-CarrascoABFPS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/DarribaAFHIS13,
author = {Diego Darriba and
Andre J. Aberer and
Tom{\'{a}}s Flouri and
Tracy A. Heath and
Fernando Izquierdo{-}Carrasco and
Alexandros Stamatakis},
title = {Boosting the Performance of Bayesian Divergence Time Estimation with
the Phylogenetic Likelihood Library},
booktitle = {2013 {IEEE} International Symposium on Parallel {\&} Distributed
Processing, Workshops and Phd Forum, Cambridge, MA, USA, May 20-24,
2013},
pages = {539--548},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/IPDPSW.2013.267},
doi = {10.1109/IPDPSW.2013.267},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ipps/DarribaAFHIS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwoca/FlouriKPS13,
author = {Tom{\'{a}}s Flouri and
Kassian Kobert and
Solon P. Pissis and
Alexandros Stamatakis},
editor = {Thierry Lecroq and
Laurent Mouchard},
title = {An Optimal Algorithm for Computing All Subtree Repeats in Trees},
booktitle = {Combinatorial Algorithms - 24th International Workshop, {IWOCA} 2013,
Rouen, France, July 10-12, 2013, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {8288},
pages = {269--282},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-45278-9\_23},
doi = {10.1007/978-3-642-45278-9\_23},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iwoca/FlouriKPS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ipl/ChristouCFIJMP12,
author = {Michalis Christou and
Maxime Crochemore and
Tom{\'{a}}s Flouri and
Costas S. Iliopoulos and
Jan Janousek and
Borivoj Melichar and
Solon P. Pissis},
title = {Computing all subtree repeats in ordered trees},
journal = {Inf. Process. Lett.},
volume = {112},
number = {24},
pages = {958--962},
year = {2012},
url = {https://doi.org/10.1016/j.ipl.2012.09.001},
doi = {10.1016/J.IPL.2012.09.001},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ipl/ChristouCFIJMP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jda/FlouriIJMP12,
author = {Tom{\'{a}}s Flouri and
Costas S. Iliopoulos and
Jan Janousek and
Borivoj Melichar and
Solon P. Pissis},
title = {Tree template matching in ranked ordered trees by pushdown automata},
journal = {J. Discrete Algorithms},
volume = {17},
pages = {15--23},
year = {2012},
url = {https://doi.org/10.1016/j.jda.2012.10.003},
doi = {10.1016/J.JDA.2012.10.003},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jda/FlouriIJMP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/kybernetika/MelicharJF12,
author = {Borivoj Melichar and
Jan Janousek and
Tom{\'{a}}s Flouri},
title = {Arbology: Trees and pushdown automata},
journal = {Kybernetika},
volume = {48},
number = {3},
pages = {402--428},
year = {2012},
url = {http://www.kybernetika.cz/content/2012/3/402},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/kybernetika/MelicharJF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/AlachiotisBFPS12,
author = {Nikolaos Alachiotis and
Simon A. Berger and
Tom{\'{a}}s Flouri and
Solon P. Pissis and
Alexandros Stamatakis},
title = {Libgapmis: An ultrafast library for short-read single-gap alignment},
booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2012, Philadelphia, USA, October 4-7, 2012},
pages = {688--695},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/BIBMW.2012.6470221},
doi = {10.1109/BIBMW.2012.6470221},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/AlachiotisBFPS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ifip12/FlouriIPP12,
author = {Tom{\'{a}}s Flouri and
Costas S. Iliopoulos and
Kunsoo Park and
Solon P. Pissis},
editor = {Lazaros S. Iliadis and
Ilias Maglogiannis and
Harris Papadopoulos and
Kostas D. Karatzas and
Spyros Sioutas},
title = {GapMis-OMP: Pairwise Short-Read Alignment on Multi-core Architectures},
booktitle = {Artificial Intelligence Applications and Innovations - {AIAI} 2012
International Workshops: AIAB, AIeIA, CISE, COPA, IIVC, ISQL, MHDW,
and WADTMB, Halkidiki, Greece, September 27-30, 2012, Proceedings,
Part {II}},
series = {{IFIP} Advances in Information and Communication Technology},
volume = {382},
pages = {593--601},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33412-2\_61},
doi = {10.1007/978-3-642-33412-2\_61},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ifip12/FlouriIPP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/stringology/FlouriIKPPST12,
author = {Tom{\'{a}}s Flouri and
Costas S. Iliopoulos and
Tomasz Kociumaka and
Solon P. Pissis and
Simon J. Puglisi and
William F. Smyth and
Wojciech Tyczynski},
editor = {Jan Holub and
Jan Zd{\'{a}}rek},
title = {New and Efficient Approaches to the Quasiperiodic Characterisation
of a String},
booktitle = {Proceedings of the Prague Stringology Conference 2012, Prague, Czech
Republic, August 27-28, 2012},
pages = {75--88},
publisher = {Department of Theoretical Computer Science, Faculty of Information
Technology, Czech Technical University in Prague},
year = {2012},
url = {http://www.stringology.org/event/2012/p08.html},
timestamp = {Wed, 10 Feb 2021 08:42:20 +0100},
biburl = {https://dblp.org/rec/conf/stringology/FlouriIKPPST12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/FlouriIP11,
author = {Tom{\'{a}}s Flouri and
Costas S. Iliopoulos and
Solon P. Pissis},
editor = {Robert Grossman and
Andrey Rzhetsky and
Sun Kim and
Wei Wang},
title = {DynMap: mapping short reads to multiple related genomes},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
2011},
pages = {330--334},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2147805.2147845},
doi = {10.1145/2147805.2147845},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/FlouriIP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/FlouriPFPIT11,
author = {Tom{\'{a}}s Flouri and
Kunsoo Park and
Kimon Frousios and
Solon P. Pissis and
Costas S. Iliopoulos and
German Tischler},
editor = {Robert Grossman and
Andrey Rzhetsky and
Sun Kim and
Wei Wang},
title = {Approximate string-matching with a single gap for sequence alignment},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
2011},
pages = {490--492},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2147805.2147879},
doi = {10.1145/2147805.2147879},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/FlouriPFPIT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fedcsis/FlouriJMIP11,
author = {Tom{\'{a}}s Flouri and
Jan Janousek and
Borivoj Melichar and
Costas S. Iliopoulos and
Solon P. Pissis},
editor = {Maria Ganzha and
Leszek A. Maciaszek and
Marcin Paprzycki},
title = {Tree Indexing by Pushdown Automata and Repeats of Subtrees},
booktitle = {Federated Conference on Computer Science and Information Systems,
FedCSIS 2011, Szczecin, Poland, 18-21 September 2011, Proceedings},
pages = {899--902},
year = {2011},
url = {https://ieeexplore.ieee.org/document/6078256/},
timestamp = {Mon, 09 Aug 2021 14:54:05 +0200},
biburl = {https://dblp.org/rec/conf/fedcsis/FlouriJMIP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/spire/ChristouCFIJMP11,
author = {Michalis Christou and
Maxime Crochemore and
Tom{\'{a}}s Flouri and
Costas S. Iliopoulos and
Jan Janousek and
Borivoj Melichar and
Solon P. Pissis},
editor = {Roberto Grossi and
Fabrizio Sebastiani and
Fabrizio Silvestri},
title = {Computing All Subtree Repeats in Ordered Ranked Trees},
booktitle = {String Processing and Information Retrieval, 18th International Symposium,
{SPIRE} 2011, Pisa, Italy, October 17-21, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7024},
pages = {338--343},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-24583-1\_33},
doi = {10.1007/978-3-642-24583-1\_33},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/spire/ChristouCFIJMP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wia/FlouriJMIP11,
author = {Tom{\'{a}}s Flouri and
Jan Janousek and
Borivoj Melichar and
Costas S. Iliopoulos and
Solon P. Pissis},
editor = {B{\'{e}}atrice Bouchou{-}Markhoff and
Pascal Caron and
Jean{-}Marc Champarnaud and
Denis Maurel},
title = {Tree Template Matching in Ranked Ordered Trees by Pushdown Automata},
booktitle = {Implementation and Application of Automata - 16th International Conference,
{CIAA} 2011, Blois, France, July 13-16, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6807},
pages = {273--281},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-22256-6\_25},
doi = {10.1007/978-3-642-22256-6\_25},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wia/FlouriJMIP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/comsis/FlouriJM10,
author = {Tom{\'{a}}s Flouri and
Jan Janousek and
Borivoj Melichar},
title = {Subtree matching by pushdown automata},
journal = {Comput. Sci. Inf. Syst.},
volume = {7},
number = {2},
pages = {331--357},
year = {2010},
url = {https://doi.org/10.2298/CSIS1002331F},
doi = {10.2298/CSIS1002331F},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/comsis/FlouriJM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/FlouriHIP10,
author = {Tom{\'{a}}s Flouri and
Jan Holub and
Costas S. Iliopoulos and
Solon P. Pissis},
editor = {Taesung Park and
Stephen Kwok{-}Wing Tsui and
Luonan Chen and
Michael K. Ng and
Limsoon Wong and
Xiaohua Hu},
title = {An algorithm for mapping short reads to a dynamically changing genomic
sequence},
booktitle = {2010 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2010, Hong Kong, China, December 18-21, 2010, Proceedings},
pages = {133--136},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/BIBM.2010.5706551},
doi = {10.1109/BIBM.2010.5706551},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/FlouriHIP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/FlouriMJ10,
author = {Tom{\'{a}}s Flouri and
Borivoj Melichar and
Jan Janousek},
editor = {Sung Y. Shin and
Sascha Ossowski and
Michael Schumacher and
Mathew J. Palakal and
Chih{-}Cheng Hung},
title = {Aho-Corasick like multiple subtree matching by pushdown automata},
booktitle = {Proceedings of the 2010 {ACM} Symposium on Applied Computing (SAC),
Sierre, Switzerland, March 22-26, 2010},
pages = {2157--2158},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1774088.1774543},
doi = {10.1145/1774088.1774543},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sac/FlouriMJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/imcsit/FlouriMJ09,
author = {Tom{\'{a}}s Flouri and
Borivoj Melichar and
Jan Janousek},
title = {Subtree matching by deterministic pushdown automata},
booktitle = {Proceedings of the International Multiconference on Computer Science
and Information Technology, {IMCSIT} 2009, Mragowo, Poland, 12-14
October 2009},
pages = {659--666},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/IMCSIT.2009.5352769},
doi = {10.1109/IMCSIT.2009.5352769},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/imcsit/FlouriMJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/FlouriIRVV08,
author = {Tom{\'{a}}s Flouri and
Costas S. Iliopoulos and
Mohammad Sohel Rahman and
Ladislav Vagner and
Michal Vor{\'{a}}cek},
editor = {Mourad Elloumi and
Josef K{\"{u}}ng and
Michal Linial and
Robert F. Murphy and
Kristan Schneider and
Cristian Toma},
title = {Indexing Factors in {DNA/RNA} Sequences},
booktitle = {Bioinformatics Research and Development, Second International Conference,
{BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
series = {Communications in Computer and Information Science},
volume = {13},
pages = {436--445},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-70600-7\_33},
doi = {10.1007/978-3-540-70600-7\_33},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bird/FlouriIRVV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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