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ORCIDBibTeX records: Andrew D. Farmer
@article{DBLP:journals/biodb/ClarkeCPBEFFKLNSSTWS23,
author = {Jennifer L. Clarke and
Laurel D. Cooper and
Monica F. Poelchau and
Tanya Z. Berardini and
Justin Elser and
Andrew D. Farmer and
Stephen P. Ficklin and
Sunita Kumari and
Marie{-}Ang{\'{e}}lique Laporte and
Rex T. Nelson and
Rie Sadohara and
Peter Selby and
Anne E. Thessen and
Brandon Whitehead and
Taner Z. Sen},
title = {Data sharing and ontology use among agricultural genetics, genomics,
and breeding databases and resources of the Agbiodata Consortium},
journal = {Database J. Biol. Databases Curation},
volume = {2023},
year = {2023},
url = {https://doi.org/10.1093/database/baad076},
doi = {10.1093/DATABASE/BAAD076},
timestamp = {Sun, 31 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/ClarkeCPBEFFKLNSSTWS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ClearyF23,
author = {Alan M. Cleary and
Andrew D. Farmer},
title = {Genome Context Viewer {(GCV)} version 2: enhanced visual exploration
of multiple annotated genomes},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{W1}},
pages = {225--231},
year = {2023},
url = {https://doi.org/10.1093/nar/gkad391},
doi = {10.1093/NAR/GKAD391},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ClearyF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-08958,
author = {Jennifer L. Clarke and
Laurel D. Cooper and
Monica F. Poelchau and
Tanya Z. Berardini and
Justin Elser and
Andrew D. Farmer and
Stephen P. Ficklin and
Sunita Kumari and
Marie{-}Ang{\'{e}}lique Laporte and
Rex T. Nelson and
Rie Sadohara and
Peter Selby and
Anne E. Thessen and
Brandon Whitehead and
Taner Z. Sen},
title = {Data sharing and ontology use among agricultural genetics, genomics,
and breeding databases and resources of the AgBioData Consortium},
journal = {CoRR},
volume = {abs/2307.08958},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2307.08958},
doi = {10.48550/ARXIV.2307.08958},
eprinttype = {arXiv},
eprint = {2307.08958},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2307-08958.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/DurantRGMCFCS22,
author = {{\'{E}}loi Durant and
Mathieu Rouard and
Eric W. Ganko and
C{\'{e}}dric Muller and
Alan M. Cleary and
Andrew D. Farmer and
Matthieu G. Conte and
Fran{\c{c}}ois Sabot},
title = {Ten simple rules for developing visualization tools in genomics},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {11},
pages = {1010622},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1010622},
doi = {10.1371/JOURNAL.PCBI.1010622},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/DurantRGMCFCS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HarperCCJPWAABB18,
author = {Lisa C. Harper and
Jacqueline D. Campbell and
Ethalinda K. S. Cannon and
Sook Jung and
Monica Poelchau and
Ramona L. Walls and
Carson M. Andorf and
Elizabeth Arnaud and
Tanya Z. Berardini and
Clayton L. Birkett and
Steven B. Cannon and
James D. Carson and
Bradford Condon and
Laurel Cooper and
Nathan A. Dunn and
Christine G. Elsik and
Andrew D. Farmer and
Stephen P. Ficklin and
David M. Grant and
Emily S. Grau and
Nic Herndon and
Zhi{-}Liang Hu and
Jodi L. Humann and
Pankaj Jaiswal and
Cl{\'{e}}ment Jonquet and
Marie{-}Ang{\'{e}}lique Laporte and
Pierre Larmande and
Gerard R. Lazo and
Fiona McCarthy and
Naama Menda and
Christopher J. Mungall and
Monica C. Munoz{-}Torres and
Sushma Naithani and
Rex T. Nelson and
Daureen Nesdill and
Carissa A. Park and
James M. Reecy and
Leonore Reiser and
Lacey{-}Anne Sanderson and
Taner Z. Sen and
Margaret Staton and
Sabarinath Subramaniam and
Marcela Karey Tello{-}Ruiz and
Victor Unda and
Deepak R. Unni and
Liya Wang and
Doreen Ware and
Jill L. Wegrzyn and
Jason Williams and
Margaret Woodhouse and
Jing Yu and
Doreen Main},
title = {AgBioData consortium recommendations for sustainable genomics and
genetics databases for agriculture},
journal = {Database J. Biol. Databases Curation},
volume = {2018},
pages = {bay088},
year = {2018},
url = {https://doi.org/10.1093/database/bay088},
doi = {10.1093/DATABASE/BAY088},
timestamp = {Tue, 25 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/HarperCCJPWAABB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClearyF18,
author = {Alan M. Cleary and
Andrew D. Farmer},
title = {Genome Context Viewer: visual exploration of multiple annotated genomes
using microsynteny},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1562--1564},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx757},
doi = {10.1093/BIOINFORMATICS/BTX757},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClearyF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhengHZVLFMCNS16,
author = {Yun Zheng and
Vandana Hivrale and
Xiaotuo Zhang and
Babu Valliyodan and
Christine Lelandais{-}Bri{\`{e}}re and
Andrew D. Farmer and
Gregory D. May and
Martin Crespi and
Henry T. Nguyen and
Ramanjulu Sunkar},
title = {Small {RNA} profiles in soybean primary root tips under water deficit},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-5}},
pages = {1--10},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0374-0},
doi = {10.1186/S12918-016-0374-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhengHZVLFMCNS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DashCCCHKKRSUWW16,
author = {Sudhansu Dash and
Jacqueline D. Campbell and
Ethalinda K. S. Cannon and
Alan M. Cleary and
Wei Huang and
Scott R. Kalberer and
Vijay Karingula and
Alex G. Rice and
Jugpreet Singh and
Pooja E. Umale and
Nathan T. Weeks and
Andrew P. Wilkey and
Andrew D. Farmer and
Steven B. Cannon},
title = {Legume information system (LegumeInfo.org): a key component of a set
of federated data resources for the legume family},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1181--1188},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1159},
doi = {10.1093/NAR/GKV1159},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DashCCCHKKRSUWW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GajendranGFAWWK06,
author = {Kamal Gajendran and
Michael D. Gonzales and
Andrew D. Farmer and
Eric Archuleta and
Joe Win and
Mark E. Waugh and
Sophien Kamoun},
title = {Phytophthora functional genomics database {(PFGD):} functional genomics
of \emph{phytophthora}-plant interactions},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {465--470},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj119},
doi = {10.1093/NAR/GKJ119},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GajendranGFAWWK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GonzalesAFGGSBW05,
author = {Michael D. Gonzales and
Eric Archuleta and
Andrew D. Farmer and
Kamal Gajendran and
David M. Grant and
Randy C. Shoemaker and
William D. Beavis and
Mark E. Waugh},
title = {The Legume Information System {(LIS):} an integrated information resource
for comparative legume biology},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {660--665},
year = {2005},
url = {https://doi.org/10.1093/nar/gki128},
doi = {10.1093/NAR/GKI128},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GonzalesAFGGSBW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SiepelFTZMBS01,
author = {Adam C. Siepel and
Andrew D. Farmer and
Andrew N. Tolopko and
Mingzhe Zhuang and
Pedro Mendes and
William D. Beavis and
Bruno W. S. Sobral},
title = {{ISYS:} a decentralized, component-based approach to the integration
of heterogeneous bioinformatics resources},
journal = {Bioinform.},
volume = {17},
number = {1},
pages = {83--94},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.1.83},
doi = {10.1093/BIOINFORMATICS/17.1.83},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SiepelFTZMBS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ibmsj/MangalamSZSWCFCW01,
author = {Harry Mangalam and
Jason E. Stewart and
Jiaye Zhou and
Karen Schlauch and
Mark E. Waugh and
Guanghong Chen and
Andrew D. Farmer and
Greg Colello and
Jennifer W. Weller},
title = {GeneX: An Open Source gene expression database and integrated tool
set},
journal = {{IBM} Syst. J.},
volume = {40},
number = {2},
pages = {552--569},
year = {2001},
url = {https://doi.org/10.1147/sj.402.0552},
doi = {10.1147/SJ.402.0552},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ibmsj/MangalamSZSWCFCW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ibmsj/SiepelTFSSPB01,
author = {Adam C. Siepel and
Andrew N. Tolopko and
Andrew D. Farmer and
Peter A. Steadman and
Faye D. Schilkey and
B. Dawn Perry and
William D. Beavis},
title = {An integration platform for heterogeneous bioinformatics software
components},
journal = {{IBM} Syst. J.},
volume = {40},
number = {2},
pages = {570--591},
year = {2001},
url = {https://doi.org/10.1147/sj.402.0570},
doi = {10.1147/SJ.402.0570},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ibmsj/SiepelTFSSPB01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BellDFFIGHPSWM01,
author = {Callum J. Bell and
Richard A. Dixon and
Andrew D. Farmer and
H. Raul Flores and
Jeff T. Inman and
Robert A. Gonzales and
Maria J. Harrison and
Nancy L. Paiva and
Angela D. Scott and
Jennifer W. Weller and
Gregory D. May},
title = {The Medicago Genome Initiative: a model legume database},
journal = {Nucleic Acids Res.},
volume = {29},
number = {1},
pages = {114--117},
year = {2001},
url = {https://doi.org/10.1093/nar/29.1.114},
doi = {10.1093/NAR/29.1.114},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BellDFFIGHPSWM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HargerCFHIKSSW00,
author = {Carol Harger and
Guanghong Chen and
Andrew D. Farmer and
Wen Huang and
Jeff T. Inman and
Donald Kiphart and
Faye D. Schilkey and
M. P. Skupski and
Jennifer W. Weller},
title = {The Genome Sequence DataBase},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {31--32},
year = {2000},
url = {https://doi.org/10.1093/nar/28.1.31},
doi = {10.1093/NAR/28.1.31},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HargerCFHIKSSW00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SelujaFMHS99,
author = {G. A. Seluja and
Andrew D. Farmer and
Mia McLeod and
Carol Harger and
Peter A. Schad},
title = {Establishing a method of vector contamination identification in database
sequences},
journal = {Bioinform.},
volume = {15},
number = {2},
pages = {106--110},
year = {1999},
url = {https://doi.org/10.1093/bioinformatics/15.2.106},
doi = {10.1093/BIOINFORMATICS/15.2.106},
timestamp = {Mon, 12 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SelujaFMHS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SkupskiBFHHIKKRSSSSTTWZH99,
author = {M. P. Skupski and
M. Booker and
Andrew D. Farmer and
M. Harpold and
Wen Huang and
Jeff T. Inman and
Donald Kiphart and
C. Kodira and
S. Root and
Faye D. Schilkey and
Jolene Schwertfeger and
Adam C. Siepel and
David Stamper and
Nina Thayer and
R. Thompson and
Jennifer R. Wortman and
J. J. Zhuang and
Carol Harger},
title = {The Genome Sequence DataBase: towards an integrated functional genomics
resource},
journal = {Nucleic Acids Res.},
volume = {27},
number = {1},
pages = {35--38},
year = {1999},
url = {https://doi.org/10.1093/nar/27.1.35},
doi = {10.1093/NAR/27.1.35},
timestamp = {Fri, 26 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/SkupskiBFHHIKKRSSSSTTWZH99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HargerSBFHHKKMSSSSSSTTWWZS98,
author = {Carol Harger and
M. P. Skupski and
J. Bingham and
Andrew D. Farmer and
S. Hoisie and
Peter T. Hraber and
Donald Kiphart and
L. Krakowski and
Mia McLeod and
Jolene Schwertfeger and
G. A. Seluja and
Adam C. Siepel and
Gautam Singh and
David Stamper and
Peter A. Steadman and
Nina Thayer and
R. Thompson and
P. Wargo and
Mark E. Waugh and
J. J. Zhuang and
Peter A. Schad},
title = {The Genome Sequence DataBase {(GSDB):} improving data quality and
data access},
journal = {Nucleic Acids Res.},
volume = {26},
number = {1},
pages = {21--26},
year = {1998},
url = {https://doi.org/10.1093/nar/26.1.21},
doi = {10.1093/NAR/26.1.21},
timestamp = {Mon, 12 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HargerSBFHHKKMSSSSSSTTWWZS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HargerSACCDEEFFFHKMMOPRRRRSSSS97,
author = {Carol Harger and
Marian Skupski and
Ethan Allen and
Christopher Clark and
David Crowley and
Emily Dickinson and
David Easley and
Ada Espinosa{-}Lujan and
Andrew D. Farmer and
Chris A. Fields and
Leandrita Flores and
Lynn Harris and
Gifford Keen and
Maurice Manning and
Michael P. McLeod and
John O'Neill and
Maria Pumilia and
Rhonda Reinert and
David Rider and
John Rohrlich and
Yolanda Romero and
Jolene Schwertfeger and
Gustavo Seluja and
Adam C. Siepel and
Gautam Singh and
Linda Smyth and
David Stamper and
Judy Stein and
Randy Suggs and
Rajini Takkallapalli and
Nina Thayer and
Gary Thompson and
Colleen Walsh and
Frederick Wedgeworth III and
Peter A. Schad},
title = {The Genome Sequence DataBase version 1.0 {(GSDB):} from low pass sequences
to complete genomes},
journal = {Nucleic Acids Res.},
volume = {25},
number = {1},
pages = {18--23},
year = {1997},
url = {https://doi.org/10.1093/nar/25.1.18},
doi = {10.1093/NAR/25.1.18},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HargerSACCDEEFFFHKMMOPRRRRSSSS97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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