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ORCIDBibTeX records: Giulio Caravagna
@article{DBLP:journals/access/AnselmiMdRCBC23,
author = {Fabio Anselmi and
Luca Manzoni and
Alberto d'Onofrio and
Alex Rodriguez and
Giulio Caravagna and
Luca Bortolussi and
Francesca Cairoli},
title = {Data Symmetries and Learning in Fully Connected Neural Networks},
journal = {{IEEE} Access},
volume = {11},
pages = {47282--47290},
year = {2023},
url = {https://doi.org/10.1109/ACCESS.2023.3274938},
doi = {10.1109/ACCESS.2023.3274938},
timestamp = {Fri, 02 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/access/AnselmiMdRCBC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PatrunoMBCdAAGC23,
author = {Lucrezia Patruno and
Salvatore Milite and
Riccardo Bergamin and
Nicola Calonaci and
Alberto d'Onofrio and
Fabio Anselmi and
Marco Antoniotti and
Alex Graudenzi and
Giulio Caravagna},
title = {A Bayesian method to infer copy number clones from single-cell {RNA}
and {ATAC} sequencing},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {11},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1011557},
doi = {10.1371/JOURNAL.PCBI.1011557},
timestamp = {Sat, 16 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/PatrunoMBCdAAGC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ital-ia/BarbatiBC23,
author = {Giulia Barbati and
Luca Bortolussi and
Giulio Caravagna},
editor = {Fabrizio Falchi and
Fosca Giannotti and
Anna Monreale and
Chiara Boldrini and
Salvatore Rinzivillo and
Sara Colantonio},
title = {Data Science and Artificial Intelligence for Life Sciences at the
University of Trieste},
booktitle = {Proceedings of the Italia Intelligenza Artificiale - Thematic Workshops
co-located with the 3rd {CINI} National Lab {AIIS} Conference on Artificial
Intelligence (Ital {IA} 2023), Pisa, Italy, May 29-30, 2023},
series = {{CEUR} Workshop Proceedings},
volume = {3486},
pages = {124--127},
publisher = {CEUR-WS.org},
year = {2023},
url = {https://ceur-ws.org/Vol-3486/97.pdf},
timestamp = {Fri, 22 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ital-ia/BarbatiBC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AngaroniCDCGR22,
author = {Fabrizio Angaroni and
Kevin Chen and
Chiara Damiani and
Giulio Caravagna and
Alex Graudenzi and
Daniele Ramazzotti},
title = {{PMCE:} efficient inference of expressive models of cancer evolution
with high prognostic power},
journal = {Bioinform.},
volume = {38},
number = {3},
pages = {754--762},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btab717},
doi = {10.1093/BIOINFORMATICS/BTAB717},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AngaroniCDCGR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/CaravagnaR21,
author = {Giulio Caravagna and
Daniele Ramazzotti},
title = {Learning the structure of Bayesian Networks via the bootstrap},
journal = {Neurocomputing},
volume = {448},
pages = {48--59},
year = {2021},
url = {https://doi.org/10.1016/j.neucom.2021.03.071},
doi = {10.1016/J.NEUCOM.2021.03.071},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijon/CaravagnaR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaravagnaSGS20,
author = {Giulio Caravagna and
Guido Sanguinetti and
Trevor A. Graham and
Andrea Sottoriva},
title = {The {MOBSTER} {R} package for tumour subclonal deconvolution from
bulk {DNA} whole-genome sequencing data},
journal = {{BMC} Bioinform.},
volume = {21},
number = {1},
pages = {531},
year = {2020},
url = {https://doi.org/10.1186/s12859-020-03863-1},
doi = {10.1186/S12859-020-03863-1},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CaravagnaSGS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fuin/MasperoDAGFVCCR20,
author = {Davide Maspero and
Chiara Damiani and
Marco Antoniotti and
Alex Graudenzi and
Marzia Di Filippo and
Marco Vanoni and
Giulio Caravagna and
Riccardo Colombo and
Daniele Ramazzotti and
Dario Pescini},
title = {The Influence of Nutrients Diffusion on a Metabolism-driven Model
of a Multi-cellular System},
journal = {Fundam. Informaticae},
volume = {171},
number = {1-4},
pages = {279--295},
year = {2020},
url = {https://doi.org/10.3233/FI-2020-1883},
doi = {10.3233/FI-2020-1883},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fuin/MasperoDAGFVCCR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RamazzottiGSAC19,
author = {Daniele Ramazzotti and
Alex Graudenzi and
Luca De Sano and
Marco Antoniotti and
Giulio Caravagna},
title = {Learning mutational graphs of individual tumour evolution from single-cell
and multi-region sequencing data},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {210:1--210:13},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2795-4},
doi = {10.1186/S12859-019-2795-4},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RamazzottiGSAC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChkhaidzeHWWHCG19,
author = {Ketevan Chkhaidze and
Timon Heide and
Benjamin Werner and
Marc J. Williams and
Weini Huang and
Giulio Caravagna and
Trevor A. Graham and
Andrea Sottoriva},
title = {Spatially constrained tumour growth affects the patterns of clonal
selection and neutral drift in cancer genomic data},
journal = {PLoS Comput. Biol.},
volume = {15},
number = {7},
year = {2019},
url = {https://doi.org/10.1371/journal.pcbi.1007243},
doi = {10.1371/JOURNAL.PCBI.1007243},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ChkhaidzeHWWHCG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibb/PatrunoGRCSAG19,
author = {Lucrezia Patruno and
Edoardo Galimberti and
Daniele Ramazzotti and
Giulio Caravagna and
Luca De Sano and
Marco Antoniotti and
Alex Graudenzi},
editor = {Paolo Cazzaniga and
Daniela Besozzi and
Ivan Merelli and
Luca Manzoni},
title = {cyTRON and cyTRON/JS: Two Cytoscape-Based Applications for the Inference
of Cancer Evolution Models},
booktitle = {Computational Intelligence Methods for Bioinformatics and Biostatistics
- 16th International Meeting, {CIBB} 2019, Bergamo, Italy, September
4-6, 2019, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {12313},
pages = {13--18},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-63061-4\_2},
doi = {10.1007/978-3-030-63061-4\_2},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cibb/PatrunoGRCSAG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cibb/2016,
editor = {Andrea Bracciali and
Giulio Caravagna and
David Gilbert and
Roberto Tagliaferri},
title = {Computational Intelligence Methods for Bioinformatics and Biostatistics
- 13th International Meeting, {CIBB} 2016, Stirling, UK, September
1-3, 2016, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {10477},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67834-4},
doi = {10.1007/978-3-319-67834-4},
isbn = {978-3-319-67833-7},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cibb/2016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/RamazzottiSSPP17,
author = {Lucrezia Patruno and
Edoardo Galimberti and
Daniele Ramazzotti and
Giulio Caravagna and
Luca De Sano and
Marco Antoniotti and
Alex Graudenzi},
title = {cyTRON and cyTRON/JS: two Cytoscape-based applications for the inference
of cancer evolution models},
journal = {CoRR},
volume = {abs/1705.03067},
year = {2017},
url = {http://arxiv.org/abs/1705.03067},
eprinttype = {arXiv},
eprint = {1705.03067},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/RamazzottiSSPP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/CaravagnaRS17,
author = {Giulio Caravagna and
Daniele Ramazzotti and
Guido Sanguinetti},
title = {On learning the structure of Bayesian Networks and submodular function
maximization},
journal = {CoRR},
volume = {abs/1706.02386},
year = {2017},
url = {http://arxiv.org/abs/1706.02386},
eprinttype = {arXiv},
eprint = {1706.02386},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/CaravagnaRS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1709-01076,
author = {Daniele Ramazzotti and
Alex Graudenzi and
Luca De Sano and
Marco Antoniotti and
Giulio Caravagna},
title = {Learning mutational graphs of individual tumor evolution from multi-sample
sequencing data},
journal = {CoRR},
volume = {abs/1709.01076},
year = {2017},
url = {http://arxiv.org/abs/1709.01076},
eprinttype = {arXiv},
eprint = {1709.01076},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1709-01076.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SanoCRGMMA16,
author = {Luca De Sano and
Giulio Caravagna and
Daniele Ramazzotti and
Alex Graudenzi and
Giancarlo Mauri and
Bud Mishra and
Marco Antoniotti},
title = {{TRONCO:} an {R} package for the inference of cancer progression models
from heterogeneous genomic data},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1911--1913},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw035},
doi = {10.1093/BIOINFORMATICS/BTW035},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SanoCRGMMA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParoniGCDMA16,
author = {Andrea Paroni and
Alex Graudenzi and
Giulio Caravagna and
Chiara Damiani and
Giancarlo Mauri and
Marco Antoniotti},
title = {CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory
NETworks},
journal = {{BMC} Bioinform.},
volume = {17},
pages = {64},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-0914-z},
doi = {10.1186/S12859-016-0914-Z},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ParoniGCDMA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijdmb/GraudenziCBCAM16,
author = {Alex Graudenzi and
Giulio Caravagna and
Iuliana M. Bocicor and
Claudia Cava and
Marco Antoniotti and
Giancarlo Mauri},
title = {Ordering cancer mutational profiles of cross-sectional copy number
alterations},
journal = {Int. J. Data Min. Bioinform.},
volume = {15},
number = {1},
pages = {59--83},
year = {2016},
url = {https://doi.org/10.1504/IJDMB.2016.076017},
doi = {10.1504/IJDMB.2016.076017},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijdmb/GraudenziCBCAM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/rjour/AntoniottiCSGMM16,
author = {Marco Antoniotti and
Giulio Caravagna and
Luca De Sano and
Alex Graudenzi and
Giancarlo Mauri and
Bud Mishra and
Daniele Ramazzotti},
title = {Design of the {TRONCO} BioConductor Package for TRanslational ONCOlogy},
journal = {R J.},
volume = {8},
number = {2},
pages = {39},
year = {2016},
url = {https://doi.org/10.32614/rj-2016-032},
doi = {10.32614/RJ-2016-032},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/rjour/AntoniottiCSGMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CaravagnaBS16,
author = {Giulio Caravagna and
Luca Bortolussi and
Guido Sanguinetti},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Matching Models Across Abstraction Levels with Gaussian Processes},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {49--66},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_4},
doi = {10.1007/978-3-319-45177-0\_4},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CaravagnaBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamazzottiCLGKM15,
author = {Daniele Ramazzotti and
Giulio Caravagna and
Loes Olde Loohuis and
Alex Graudenzi and
Ilya Korsunsky and
Giancarlo Mauri and
Marco Antoniotti and
Bud Mishra},
title = {{CAPRI:} efficient inference of cancer progression models from cross-sectional
data},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3016--3026},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv296},
doi = {10.1093/BIOINFORMATICS/BTV296},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RamazzottiCLGKM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaravagnaSA15,
author = {Giulio Caravagna and
Luca De Sano and
Marco Antoniotti},
title = {Automatising the analysis of stochastic biochemical time-series},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S-9}},
pages = {S8},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-S9-S8},
doi = {10.1186/1471-2105-16-S9-S8},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CaravagnaSA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/iandc/CaravagnadAM14,
author = {Giulio Caravagna and
Alberto d'Onofrio and
Marco Antoniotti and
Giancarlo Mauri},
title = {Stochastic Hybrid Automata with delayed transitions to model biochemical
systems with delays},
journal = {Inf. Comput.},
volume = {236},
pages = {19--34},
year = {2014},
url = {https://doi.org/10.1016/j.ic.2014.01.010},
doi = {10.1016/J.IC.2014.01.010},
timestamp = {Fri, 12 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/iandc/CaravagnadAM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nc/GraudenziCM14,
author = {Alex Graudenzi and
Giulio Caravagna and
Giancarlo Mauri},
title = {Preface},
journal = {Nat. Comput.},
volume = {13},
number = {3},
pages = {285--286},
year = {2014},
url = {https://doi.org/10.1007/s11047-014-9448-3},
doi = {10.1007/S11047-014-9448-3},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nc/GraudenziCM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nc/FranciscisCd14,
author = {Sebastiano de Franciscis and
Giulio Caravagna and
Alberto d'Onofrio},
title = {Bounded noises as a natural tool to model extrinsic fluctuations in
biomolecular networks},
journal = {Nat. Comput.},
volume = {13},
number = {3},
pages = {297--307},
year = {2014},
url = {https://doi.org/10.1007/s11047-014-9424-y},
doi = {10.1007/S11047-014-9424-Y},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nc/FranciscisCd14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/KorsunskyRCM14,
author = {Ilya Korsunsky and
Daniele Ramazzotti and
Giulio Caravagna and
Bud Mishra},
title = {Inference of Cancer Progression Models with Biological Noise},
journal = {CoRR},
volume = {abs/1408.6032},
year = {2014},
url = {http://arxiv.org/abs/1408.6032},
eprinttype = {arXiv},
eprint = {1408.6032},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/KorsunskyRCM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AntoniottiBCCGM13,
author = {Marco Antoniotti and
Gary D. Bader and
Giulio Caravagna and
Silvia Crippa and
Alex Graudenzi and
Giancarlo Mauri},
title = {GeStoDifferent: a Cytoscape plugin for the generation and the identification
of gene regulatory networks describing a stochastic cell differentiation
process},
journal = {Bioinform.},
volume = {29},
number = {4},
pages = {513--514},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/bts726},
doi = {10.1093/BIOINFORMATICS/BTS726},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AntoniottiBCCGM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/springsim/CaravagnadM13,
author = {Giulio Caravagna and
Alberto d'Onofrio and
Giancarlo Mauri},
editor = {Gabriel A. Wainer and
Pieter J. Mosterman and
Fernando J. Barros and
Gregory Zacharewicz},
title = {NoisySim: exact simulation of stochastic chemically reacting systems
with extrinsic bounded noises {(WIP)}},
booktitle = {2013 Spring Simulation Multiconference, SpringSim '13, San Diego,
CA, USA, April 7-10, 2013, Proceedings of the Symposium on Theory
of Modeling and Simulation - {DEVS} Integrative M{\&}S Symposium},
pages = {12},
publisher = {{ACM}},
year = {2013},
url = {http://dl.acm.org/citation.cfm?id=2499646},
timestamp = {Fri, 20 Sep 2013 09:16:38 +0200},
biburl = {https://dblp.org/rec/conf/springsim/CaravagnadM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/springsim/BraccialiCU13,
author = {Andrea Bracciali and
Giulio Caravagna and
Amjad Ullah},
editor = {Gabriel A. Wainer and
Pieter J. Mosterman and
Fernando J. Barros and
Gregory Zacharewicz},
title = {Survival vs. revenue: modelling and reasoning on population dynamics
{(WIP)}},
booktitle = {2013 Spring Simulation Multiconference, SpringSim '13, San Diego,
CA, USA, April 7-10, 2013, Proceedings of the Symposium on Theory
of Modeling and Simulation - {DEVS} Integrative M{\&}S Symposium},
pages = {29},
publisher = {{ACM}},
year = {2013},
url = {http://dl.acm.org/citation.cfm?id=2499663},
timestamp = {Fri, 20 Sep 2013 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/springsim/BraccialiCU13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/CaravagnaGAM13,
author = {Giulio Caravagna and
Alex Graudenzi and
Marco Antoniotti and
Giovanni De Matteis},
editor = {Alex Graudenzi and
Giulio Caravagna and
Giancarlo Mauri and
Marco Antoniotti},
title = {Analysis of the spatial and dynamical properties of a multiscale model
of intestinal crypts},
booktitle = {Proceedings Wivace 2013 - Italian Workshop on Artificial Life and
Evolutionary Computation, Milan, Italy, July 1-2, 2013},
series = {{EPTCS}},
volume = {130},
pages = {79--82},
year = {2013},
url = {https://doi.org/10.4204/EPTCS.130.12},
doi = {10.4204/EPTCS.130.12},
timestamp = {Tue, 11 May 2021 13:27:13 +0200},
biburl = {https://dblp.org/rec/journals/corr/CaravagnaGAM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/BesozziCCNPR13,
author = {Daniela Besozzi and
Giulio Caravagna and
Paolo Cazzaniga and
Marco S. Nobile and
Dario Pescini and
Alessandro Re},
editor = {Alex Graudenzi and
Giulio Caravagna and
Giancarlo Mauri and
Marco Antoniotti},
title = {GPU-powered Simulation Methodologies for Biological Systems},
booktitle = {Proceedings Wivace 2013 - Italian Workshop on Artificial Life and
Evolutionary Computation, Milan, Italy, July 1-2, 2013},
series = {{EPTCS}},
volume = {130},
pages = {87--91},
year = {2013},
url = {https://doi.org/10.4204/EPTCS.130.14},
doi = {10.4204/EPTCS.130.14},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BesozziCCNPR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/corr/GraudenziCMA13,
editor = {Alex Graudenzi and
Giulio Caravagna and
Giancarlo Mauri and
Marco Antoniotti},
title = {Proceedings Wivace 2013 - Italian Workshop on Artificial Life and
Evolutionary Computation, Milan, Italy, July 1-2, 2013},
series = {{EPTCS}},
volume = {130},
year = {2013},
url = {https://doi.org/10.4204/EPTCS.130},
doi = {10.4204/EPTCS.130},
timestamp = {Tue, 11 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/GraudenziCMA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaravagnaBd12,
author = {Giulio Caravagna and
Roberto Barbuti and
Alberto d'Onofrio},
title = {Fine-tuning anti-tumor immunotherapies via stochastic simulations},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-4}},
pages = {S8},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S4-S8},
doi = {10.1186/1471-2105-13-S4-S8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CaravagnaBd12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/CaravagnaH12,
author = {Giulio Caravagna and
Jane Hillston},
title = {Bio-PEPAd: {A} non-Markovian extension of Bio-PEPA},
journal = {Theor. Comput. Sci.},
volume = {419},
pages = {26--49},
year = {2012},
url = {https://doi.org/10.1016/j.tcs.2011.11.028},
doi = {10.1016/J.TCS.2011.11.028},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/CaravagnaH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BarbutiCMMT12,
author = {Roberto Barbuti and
Giulio Caravagna and
Andrea Maggiolo{-}Schettini and
Paolo Milazzo and
Simone Tini},
title = {Foundational aspects of multiscale modeling of biological systems
with process algebras},
journal = {Theor. Comput. Sci.},
volume = {431},
pages = {96--116},
year = {2012},
url = {https://doi.org/10.1016/j.tcs.2011.12.058},
doi = {10.1016/J.TCS.2011.12.058},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BarbutiCMMT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/imis/CaravagnaCWP12,
author = {Giulio Caravagna and
Gabriele Costa and
Luca Wiegand and
Giovanni Pardini},
editor = {Ilsun You and
Leonard Barolli and
Antonio Gentile and
Hae{-}Duck Joshua Jeong and
Marek R. Ogiela and
Fatos Xhafa},
title = {Lazy Monitoring for Distributed Computing Environments},
booktitle = {Sixth International Conference on Innovative Mobile and Internet Services
in Ubiquitous Computing, {IMIS} 2012, Palermo, Italy, July 4-6, 2012},
pages = {259--265},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/IMIS.2012.186},
doi = {10.1109/IMIS.2012.186},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/imis/CaravagnaCWP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/stm/CaravagnaCP12,
author = {Giulio Caravagna and
Gabriele Costa and
Giovanni Pardini},
editor = {Audun J{\o}sang and
Pierangela Samarati and
Marinella Petrocchi},
title = {Lazy Security Controllers},
booktitle = {Security and Trust Management - 8th International Workshop, {STM}
2012, Pisa, Italy, September 13-14, 2012, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {7783},
pages = {33--48},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-38004-4\_3},
doi = {10.1007/978-3-642-38004-4\_3},
timestamp = {Tue, 05 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/stm/CaravagnaCP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/abs-1208-3855,
author = {Giulio Caravagna and
Alex Graudenzi and
Marco Antoniotti and
Giancarlo Mauri and
Alberto d'Onofrio},
editor = {Ezio Bartocci and
Luca Bortolussi},
title = {Effects of delayed immune-response in tumor immune-system interplay},
booktitle = {Proceedings First International Workshop on Hybrid Systems and Biology,
{HSB} 2012, Newcastle Upon Tyne, UK, 3rd September 2012},
series = {{EPTCS}},
volume = {92},
pages = {106--121},
year = {2012},
url = {https://doi.org/10.4204/EPTCS.92.8},
doi = {10.4204/EPTCS.92.8},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1208-3855.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/it/Caravagna11,
author = {Giulio Caravagna},
title = {Formal Modeling and Simulation of Biological Systems with Delays},
school = {University of Pisa, Italy},
year = {2011},
url = {https://etd.adm.unipi.it/theses/available/etd-06152011-113458/},
timestamp = {Wed, 29 Mar 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/it/Caravagna11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/BarbutiCMM11,
author = {Roberto Barbuti and
Giulio Caravagna and
Andrea Maggiolo{-}Schettini and
Paolo Milazzo},
title = {Delay Stochastic Simulation of Biological Systems: {A} Purely Delayed
Approach},
journal = {Trans. Comp. Sys. Biology},
volume = {13},
pages = {61--84},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-19748-2\_4},
doi = {10.1007/978-3-642-19748-2\_4},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/BarbutiCMM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/abs-1011-0491,
author = {Roberto Barbuti and
Giulio Caravagna and
Paolo Milazzo and
Andrea Maggiolo{-}Schettini and
Simone Tini},
editor = {Gabriel Ciobanu and
Maciej Koutny},
title = {Aspects of multiscale modelling in a process algebra for biological
systems},
booktitle = {Proceedings Fourth Workshop on Membrane Computing and Biologically
Inspired Process Calculi, MeCBIC 2010, Jena, Germany, 23 August 2010},
series = {{EPTCS}},
volume = {40},
pages = {54--69},
year = {2010},
url = {https://doi.org/10.4204/EPTCS.40.5},
doi = {10.4204/EPTCS.40.5},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1011-0491.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/abs-1011-0493,
author = {Giulio Caravagna and
Jane Hillston},
editor = {Gabriel Ciobanu and
Maciej Koutny},
title = {Modeling biological systems with delays in Bio-PEPA},
booktitle = {Proceedings Fourth Workshop on Membrane Computing and Biologically
Inspired Process Calculi, MeCBIC 2010, Jena, Germany, 23 August 2010},
series = {{EPTCS}},
volume = {40},
pages = {85--101},
year = {2010},
url = {https://doi.org/10.4204/EPTCS.40.7},
doi = {10.4204/EPTCS.40.7},
timestamp = {Wed, 12 Sep 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1011-0493.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijccc/BarbutiCMM09,
author = {Roberto Barbuti and
Giulio Caravagna and
Andrea Maggiolo{-}Schettini and
Paolo Milazzo},
title = {P Systems with Endosomes},
journal = {Int. J. Comput. Commun. Control},
volume = {4},
number = {3},
pages = {214--223},
year = {2009},
url = {https://doi.org/10.15837/ijccc.2009.3.2429},
doi = {10.15837/IJCCC.2009.3.2429},
timestamp = {Fri, 20 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijccc/BarbutiCMM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BarbutiCMM09,
author = {Roberto Barbuti and
Giulio Caravagna and
Andrea Maggiolo{-}Schettini and
Paolo Milazzo},
title = {An intermediate language for the stochastic simulation of biological
systems},
journal = {Theor. Comput. Sci.},
volume = {410},
number = {33-34},
pages = {3085--3109},
year = {2009},
url = {https://doi.org/10.1016/j.tcs.2008.09.032},
doi = {10.1016/J.TCS.2008.09.032},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BarbutiCMM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/abs-0910-1219,
author = {Roberto Barbuti and
Giulio Caravagna and
Paolo Milazzo and
Andrea Maggiolo{-}Schettini},
editor = {Ralph{-}Johan Back and
Ion Petre and
Erik P. de Vink},
title = {On the Interpretation of Delays in Delay Stochastic Simulation of
Biological Systems},
booktitle = {Proceedings Second International Workshop on Computational Models
for Cell Processes, {COMPMOD} 2009, Eindhoven, the Netherlands, November
3, 2009},
series = {{EPTCS}},
volume = {6},
pages = {17--29},
year = {2009},
url = {https://doi.org/10.4204/EPTCS.6.2},
doi = {10.4204/EPTCS.6.2},
timestamp = {Mon, 15 Jun 2020 16:54:36 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-0910-1219.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sfm/BarbutiCMMP08,
author = {Roberto Barbuti and
Giulio Caravagna and
Andrea Maggiolo{-}Schettini and
Paolo Milazzo and
Giovanni Pardini},
editor = {Marco Bernardo and
Pierpaolo Degano and
Gianluigi Zavattaro},
title = {The Calculus of Looping Sequences},
booktitle = {Formal Methods for Computational Systems Biology, 8th International
School on Formal Methods for the Design of Computer, Communication,
and Software Systems, {SFM} 2008, Bertinoro, Italy, June 2-7, 2008,
Advanced Lectures},
series = {Lecture Notes in Computer Science},
volume = {5016},
pages = {387--423},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-68894-5\_11},
doi = {10.1007/978-3-540-68894-5\_11},
timestamp = {Tue, 14 May 2019 10:00:44 +0200},
biburl = {https://dblp.org/rec/conf/sfm/BarbutiCMMP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/entcs/BarbutiCMM08,
author = {Roberto Barbuti and
Giulio Caravagna and
Andrea Maggiolo{-}Schettini and
Paolo Milazzo},
editor = {Nicola Cannata and
Emanuela Merelli},
title = {An Intermediate Language for the Simulation of Biological Systems},
booktitle = {Proceedings of the First Workshop "From Biology To Concurrency and
back", FBTC@CONCUR 2007, Lisbon, Portugal, September 8, 2007},
series = {Electronic Notes in Theoretical Computer Science},
volume = {194},
number = {3},
pages = {19--34},
publisher = {Elsevier},
year = {2007},
url = {https://doi.org/10.1016/j.entcs.2007.12.004},
doi = {10.1016/J.ENTCS.2007.12.004},
timestamp = {Thu, 09 Feb 2023 10:12:34 +0100},
biburl = {https://dblp.org/rec/journals/entcs/BarbutiCMM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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