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ORCIDBibTeX records: Hidemasa Bono
@article{DBLP:journals/nar/AbugessaisaRLSH21,
author = {Imad Abugessaisa and
Jordan A. Ramilowski and
Marina Lizio and
Jesicca Severin and
Akira Hasegawa and
Jayson Harshbarger and
Atsushi Kondo and
Shuhei Noguchi and
Chi Wai Yip and
Jasmine Li Ching Ooi and
Michihira Tagami and
Fumi Hori and
Saumya Agrawal and
Chung{-}Chau Hon and
M{\'{e}}lissa Cardon and
Shuya Ikeda and
Hiromasa Ono and
Hidemasa Bono and
Masaki Kato and
Kosuke Hashimoto and
Alessandro Bonetti and
Norio Kobayashi and
Jay W. Shin and
Michiel J. L. de Hoon and
Yoshihide Hayashizaki and
Piero Carninci and
Hideya Kawaji and
Takeya Kasukawa},
title = {{FANTOM} enters 20th year: expansion of transcriptomic atlases and
functional annotation of non-coding RNAs},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D892--D898},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1054},
doi = {10.1093/NAR/GKAA1054},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AbugessaisaRLSH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/VosKMKKKMTYYWAAAABBBBBCCD20,
author = {Rutger A. Vos and
Toshiaki Katayama and
Hiroyuki Mishima and
Shin Kawano and
Shuichi Kawashima and
Jin{-}Dong Kim and
Yuki Moriya and
Toshiaki Tokimatsu and
Atsuko Yamaguchi and
Yasunori Yamamoto and
Hongyan Wu and
Peter Amstutz and
Erick Antezana and
Nobuyuki P. Aoki and
Kazuharu Arakawa and
Jerven T. Bolleman and
Evan E. Bolton and
Raoul Jean Pierre Bonnal and
Hidemasa Bono and
Kees Burger and
Hirokazu Chiba and
Kevin Bretonnel Cohen and
Eric W. Deutsch and
Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis and
Gang Fu and
Takatomo Fujisawa and
Atsushi Fukushima and
Alexander Garc{\'{\i}}a Castro and
Naohisa Goto and
Tudor Groza and
Colin Hercus and
Robert Hoehndorf and
Kotone Itaya and
Nick S. Juty and
Takeshi Kawashima and
Jee{-}Hyub Kim and
Akira R. Kinjo and
Masaaki Kotera and
Kouji Kozaki and
Sadahiro Kumagai and
Tatsuya Kushida and
Thomas L{\"{u}}tteke and
Masaaki Matsubara and
Joe Miyamoto and
Attayeb Mohsen and
Hiroshi Mori and
Yuki Naito and
Takeru Nakazato and
Jeremy NguyenXuan and
Kozo Nishida and
Naoki Nishida and
Hiroyo Nishide and
Soichi Ogishima and
Tazro Ohta and
Shujiro Okuda and
Benedict Paten and
Jean{-}Luc Perret and
Philip Prathipati and
Pjotr Prins and
N{\'{u}}ria Queralt{-}Rosinach and
Daisuke Shinmachi and
Shinya Suzuki and
Tsuyosi Tabata and
Terue Takatsuki and
Kieron R. Taylor and
Mark Thompson and
Ikuo Uchiyama and
Bruno Vieira and
Chih{-}Hsuan Wei and
Mark D. Wilkinson and
Issaku Yamada and
Ryota Yamanaka and
Kazutoshi Yoshitake and
Akiyasu C. Yoshizawa and
Michel Dumontier and
Kenjiro Kosaki and
Toshihisa Takagi},
title = {BioHackathon 2015: Semantics of data for life sciences and reproducible
research},
journal = {F1000Research},
volume = {9},
pages = {136},
year = {2020},
url = {https://doi.org/10.12688/f1000research.18236.1},
doi = {10.12688/F1000RESEARCH.18236.1},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/f1000research/VosKMKKKMTYYWAAAABBBBBCCD20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/KatayamaKMKKKOWWYYAAABBBB19,
author = {Toshiaki Katayama and
Shuichi Kawashima and
Gos Micklem and
Shin Kawano and
Jin{-}Dong Kim and
Simon Kocbek and
Shinobu Okamoto and
Yue Wang and
Hongyan Wu and
Atsuko Yamaguchi and
Yasunori Yamamoto and
Erick Antezana and
Kiyoko F. Aoki{-}Kinoshita and
Kazuharu Arakawa and
Masaki Banno and
Joachim Baran and
Jerven T. Bolleman and
Raoul Jean Pierre Bonnal and
Hidemasa Bono and
Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis and
Robert M. Buels and
Matthew P. Campbell and
Hirokazu Chiba and
Peter J. A. Cock and
Kevin Bretonnel Cohen and
Michel Dumontier and
Takatomo Fujisawa and
Toyofumi Fujiwara and
Leyla J. Garc{\'{\i}}a and
Pascale Gaudet and
Emi Hattori and
Robert Hoehndorf and
Kotone Itaya and
Maori Ito and
Daniel Jamieson and
Simon Jupp and
Nick S. Juty and
Alex Kalderimis and
Fumihiro Kato and
Hideya Kawaji and
Takeshi Kawashima and
Akira R. Kinjo and
Yusuke Komiyama and
Masaaki Kotera and
Tatsuya Kushida and
James Malone and
Masaaki Matsubara and
Satoshi Mizuno and
Sayaka Mizutani and
Hiroshi Mori and
Yuki Moriya and
Katsuhiko Murakami and
Takeru Nakazato and
Hiroyo Nishide and
Yosuke Nishimura and
Soichi Ogishima and
Tazro Ohta and
Shujiro Okuda and
Hiromasa Ono and
Yasset P{\'{e}}rez{-}Riverol and
Daisuke Shinmachi and
Andrea Splendiani and
Francesco Strozzi and
Shinya Suzuki and
Junichi Takehara and
Mark Thompson and
Toshiaki Tokimatsu and
Ikuo Uchiyama and
Karin Verspoor and
Mark D. Wilkinson and
Sarala M. Wimalaratne and
Issaku Yamada and
Nozomi Yamamoto and
Masayuki Yarimizu and
Shoko Kawamoto and
Toshihisa Takagi},
title = {BioHackathon series in 2013 and 2014: improvements of semantic interoperability
in life science data and services},
journal = {F1000Research},
volume = {8},
pages = {1677},
year = {2019},
url = {https://doi.org/10.12688/f1000research.18238.1},
doi = {10.12688/F1000RESEARCH.18238.1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/KatayamaKMKKKOWWYYAAABBBB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LizioHANKSMAMML17,
author = {Marina Lizio and
Jayson Harshbarger and
Imad Abugessaisa and
Shuei Noguchi and
Atsushi Kondo and
Jessica Severin and
Chris Mungall and
David J. Arenillas and
Anthony Mathelier and
Yulia A. Medvedeva and
Andreas Lennartsson and
Finn Drabl{\o}s and
Jordan A. Ramilowski and
Owen J. L. Rackham and
Julian Gough and
Robin Andersson and
Albin Sandelin and
Hans Ienasescu and
Hiromasa Ono and
Hidemasa Bono and
Yoshihide Hayashizaki and
Piero Carninci and
Alistair R. R. Forrest and
Takeya Kasukawa and
Hideya Kawaji},
title = {Update of the {FANTOM} web resource: high resolution transcriptome
of diverse cell types in mammals},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D737--D743},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw995},
doi = {10.1093/NAR/GKW995},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LizioHANKSMAMML17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NaitoHBU15,
author = {Yuki Naito and
Kimihiro Hino and
Hidemasa Bono and
Kumiko Ui{-}Tei},
title = {CRISPRdirect: software for designing CRISPR/Cas guide {RNA} with reduced
off-target sites},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1120--1123},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu743},
doi = {10.1093/BIOINFORMATICS/BTU743},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NaitoHBU15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/KatayamaWAKYYOKKWWKOBKAAAAABBBBCCCCCC14,
author = {Toshiaki Katayama and
Mark D. Wilkinson and
Kiyoko F. Aoki{-}Kinoshita and
Shuichi Kawashima and
Yasunori Yamamoto and
Atsuko Yamaguchi and
Shinobu Okamoto and
Shin Kawano and
Jin{-}Dong Kim and
Yue Wang and
Hongyan Wu and
Yoshinobu Kano and
Hiromasa Ono and
Hidemasa Bono and
Simon Kocbek and
Jan Aerts and
Yukie Akune and
Erick Antezana and
Kazuharu Arakawa and
Bruno Aranda and
Joachim Baran and
Jerven T. Bolleman and
Raoul Jean Pierre Bonnal and
Pier Luigi Buttigieg and
Matthew P. Campbell and
Yi{-}an Chen and
Hirokazu Chiba and
Peter J. A. Cock and
Kevin Bretonnel Cohen and
Alexandru Constantin},
title = {BioHackathon series in 2011 and 2012: penetration of ontology and
linked data in life science domains},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {5},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-5},
doi = {10.1186/2041-1480-5-5},
timestamp = {Tue, 02 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/KatayamaWAKYYOKKWWKOBKAAAAABBBBCCCCCC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KawanoOTB12,
author = {Shin Kawano and
Hiromasa Ono and
Toshihisa Takagi and
Hidemasa Bono},
title = {Tutorial videos of bioinformatics resources: online distribution trial
in Japan named TogoTV},
journal = {Briefings Bioinform.},
volume = {13},
number = {2},
pages = {258--268},
year = {2012},
url = {https://doi.org/10.1093/bib/bbr039},
doi = {10.1093/BIB/BBR039},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/KawanoOTB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NaitoB12,
author = {Yuki Naito and
Hidemasa Bono},
title = {{GGRNA:} an ultrafast, transcript-oriented search engine for genes
and transcripts},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Web-Server-Issue},
pages = {592--596},
year = {2012},
url = {https://doi.org/10.1093/nar/gks448},
doi = {10.1093/NAR/GKS448},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NaitoB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/YamamotoYBT11,
author = {Yasunori Yamamoto and
Atsuko Yamaguchi and
Hidemasa Bono and
Toshihisa Takagi},
title = {Allie: a database and a search service of abbreviations and long forms},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/bar013},
doi = {10.1093/DATABASE/BAR013},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/YamamotoYBT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NakazatoBMT09,
author = {Takeru Nakazato and
Hidemasa Bono and
Hideo Matsuda and
Toshihisa Takagi},
title = {Gendoo: Functional profiling of gene and disease features using MeSH
vocabulary},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Web-Server-Issue},
pages = {166--169},
year = {2009},
url = {https://doi.org/10.1093/nar/gkp483},
doi = {10.1093/NAR/GKP483},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NakazatoBMT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/NakazatoTMMBA08,
author = {Takeru Nakazato and
Toru Takinaka and
Hironori Mizuguchi and
Hideo Matsuda and
Hidemasa Bono and
Minoru Asogawa},
title = {BioCompass: {A} Novel Functional Inference Tool that Utilizes MeSH
Hierarchy to Analyze Groups of Genes},
journal = {Silico Biol.},
volume = {8},
number = {1},
pages = {53--61},
year = {2008},
url = {http://content.iospress.com/articles/in-silico-biology/isb00343},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/NakazatoTMMBA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/KasukawaBHOM03,
author = {Takeya Kasukawa and
Hidemasa Bono and
Yoshihide Hayashizaki and
Yasushi Okazaki and
Hideo Matsuda},
title = {MaXML: mouse annotation {XML}},
journal = {Silico Biol.},
volume = {4},
number = {1},
pages = {7--15},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00113},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/KasukawaBHOM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BonoKFHO03,
author = {Hidemasa Bono and
Takeya Kasukawa and
Masaaki Furuno and
Yoshihide Hayashizaki and
Yasushi Okazaki},
title = {{FANTOM} {DB:} database of Functional Annotation of {RIKEN} Mouse
cDNA Clones},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {116--118},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.116},
doi = {10.1093/NAR/30.1.116},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BonoKFHO03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BonoKHO03,
author = {Hidemasa Bono and
Takeya Kasukawa and
Yoshihide Hayashizaki and
Yasushi Okazaki},
title = {{READ:} {RIKEN} Expression Array Database},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {211--213},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.211},
doi = {10.1093/NAR/30.1.211},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BonoKHO03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OgataGSFBK99,
author = {Hiroyuki Ogata and
Susumu Goto and
Kazushige Sato and
Wataru Fujibuchi and
Hidemasa Bono and
Minoru Kanehisa},
title = {{KEGG:} Kyoto Encyclopedia of Genes and Genomes},
journal = {Nucleic Acids Res.},
volume = {27},
number = {1},
pages = {29--34},
year = {1999},
url = {https://doi.org/10.1093/nar/27.1.29},
doi = {10.1093/NAR/27.1.29},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OgataGSFBK99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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