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ORCIDBibTeX records: Jerven T. Bolleman
@article{DBLP:journals/bioinformatics/CoudertGCPBNSRBBAAAABBNB23,
author = {Elisabeth Coudert and
Sebastien Gehant and
Edouard De Castro and
Monica Pozzato and
Delphine Baratin and
Teresa Batista Neto and
Christian J. A. Sigrist and
Nicole Redaschi and
Alan Bridge and
Alan J. Bridge and
Lucila Aimo and
Ghislaine Argoud{-}Puy and
Andrea H. Auchincloss and
Kristian B. Axelsen and
Parit Bansal and
Marie{-}Claude Blatter and
Jerven T. Bolleman and
Emmanuel Boutet and
Lionel Breuza and
Blanca Cabrera Gil and
Cristina Casals{-}Casas and
Kamal Chikh Echioukh and
B{\'{e}}atrice A. Cuche and
Anne Estreicher and
Maria Livia Famiglietti and
Marc Feuermann and
Elisabeth Gasteiger and
Pascale Gaudet and
Vivienne Baillie Gerritsen and
Arnaud Gos and
Nadine Gruaz{-}Gumowski and
Chantal Hulo and
Nevila Hyka{-}Nouspikel and
Florence Jungo and
Arnaud Kerhornou and
Philippe Le Mercier and
Damien Lieberherr and
Patrick Masson and
Anne Morgat and
Venkatesh Muthukrishnan and
Salvo Paesano and
Ivo Pedruzzi and
Sandrine Pilbout and
Lucille Pourcel and
Sylvain Poux and
Manuela Pruess and
Catherine Rivoire and
Karin Sonesson and
Shyamala Sundaram and
Alex Bateman and
Maria Jesus Martin and
Sandra E. Orchard and
Michele Magrane and
Shadab Ahmad and
Emanuele Alpi and
Emily H. Bowler{-}Barnett and
Ramona Britto and
Hema Bye{-}A{-}Jee and
Austra Cukura and
Paul Denny and
Tunca Dogan and
Thankgod Ebenezer and
Jun Fan and
Penelope Garmiri and
Leonardo Jose da Costa Gonzales and
Emma Hatton{-}Ellis and
Abdulrahman Hussein and
Alexandr Ignatchenko and
Giuseppe Insana and
Rizwan Ishtiaq and
Vishal Joshi and
Dushyanth Jyothi and
Swaathi Kandasamy and
Antonia Lock and
Aurelien Luciani and
Marija Lugaric and
Jie Luo and
Yvonne Lussi and
Alistair MacDougall and
F{\'{a}}bio Madeira and
Mahdi Mahmoudy and
Alok Mishra and
Katie Moulang and
Andrew Nightingale and
Sangya Pundir and
Guoying Qi and
Shriya Raj and
Pedro Raposo and
Daniel Rice and
Rabie Saidi and
Rafael Santos and
Elena Speretta and
James D. Stephenson and
Prabhat Totoo and
Edward Turner and
Nidhi Tyagi and
Preethi Vasudev and
Kate Warner and
Xavier Watkins and
Rossana Zaru and
Hermann Zellner and
Cathy H. Wu and
Cecilia N. Arighi and
Leslie Arminski and
Chuming Chen and
Yongxing Chen and
Hongzhan Huang and
Kati Laiho and
Peter B. McGarvey and
Darren A. Natale and
Karen Ross and
C. R. Vinayaka and
Qinghua Wang and
Yuqi Wang},
title = {Annotation of biologically relevant ligands in UniProtKB using ChEBI},
journal = {Bioinform.},
volume = {39},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btac793},
doi = {10.1093/BIOINFORMATICS/BTAC793},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CoudertGCPBNSRBBAAAABBNB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/BollemanBRC23,
author = {Jerven T. Bolleman and
Alan J. Bridge and
Nicole Redaschi and
The UniProt Consortium},
editor = {Atsuko Yamaguchi and
Andrea Splendiani and
M. Scott Marshall and
Chris Baker and
Jerven T. Bolleman and
Albert Burger and
Leyla Jael Castro and
Ole Eigenbrod and
Sabine {\"{O}}sterle and
Martin Romacker and
Andra Waagmeester},
title = {Making expert curated knowledge graphs {FAIR}},
booktitle = {14th International Conference on Semantic Web Applications and Tools
for Health Care and Life Sciences {(SWAT4HCLS} 2023), Basel, Switzerland,
February 13-16, 2023},
series = {{CEUR} Workshop Proceedings},
volume = {3415},
pages = {116--117},
publisher = {CEUR-WS.org},
year = {2023},
url = {https://ceur-ws.org/Vol-3415/paper-17.pdf},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/BollemanBRC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/GehantCMBRBC23,
author = {Sebastien Gehant and
Elisabeth Coudert and
Anne Morgat and
Jerven T. Bolleman and
Nicole Redaschi and
Alan J. Bridge and
The UniProt Consortium},
editor = {Atsuko Yamaguchi and
Andrea Splendiani and
M. Scott Marshall and
Chris Baker and
Jerven T. Bolleman and
Albert Burger and
Leyla Jael Castro and
Ole Eigenbrod and
Sabine {\"{O}}sterle and
Martin Romacker and
Andra Waagmeester},
title = {UniProt, ChEBI and {IDSM} Sachem: exploring biologically relevant
ligands},
booktitle = {14th International Conference on Semantic Web Applications and Tools
for Health Care and Life Sciences {(SWAT4HCLS} 2023), Basel, Switzerland,
February 13-16, 2023},
series = {{CEUR} Workshop Proceedings},
volume = {3415},
pages = {181--183},
publisher = {CEUR-WS.org},
year = {2023},
url = {https://ceur-ws.org/Vol-3415/paper-49.pdf},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/GehantCMBRBC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/swat4ls/2023,
editor = {Atsuko Yamaguchi and
Andrea Splendiani and
M. Scott Marshall and
Chris Baker and
Jerven T. Bolleman and
Albert Burger and
Leyla Jael Castro and
Ole Eigenbrod and
Sabine {\"{O}}sterle and
Martin Romacker and
Andra Waagmeester},
title = {14th International Conference on Semantic Web Applications and Tools
for Health Care and Life Sciences {(SWAT4HCLS} 2023), Basel, Switzerland,
February 13-16, 2023},
series = {{CEUR} Workshop Proceedings},
volume = {3415},
publisher = {CEUR-WS.org},
year = {2023},
url = {https://ceur-ws.org/Vol-3415},
urn = {urn:nbn:de:0074-3415-0},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/swat4ls/2023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MercierBCGBABBC22,
author = {Philippe Le Mercier and
Jerven T. Bolleman and
Edouard De Castro and
Elisabeth Gasteiger and
Parit Bansal and
Andrea H. Auchincloss and
Emmanuel Boutet and
Lionel Breuza and
Cristina Casals{-}Casas and
Anne Estreicher and
Marc Feuermann and
Damien Lieberherr and
Catherine Rivoire and
Ivo Pedruzzi and
Nicole Redaschi and
Alan J. Bridge},
title = {SwissBioPics - an interactive library of cell images for the visualization
of subcellular location data},
journal = {Database J. Biol. Databases Curation},
volume = {2022},
number = {2022},
year = {2022},
url = {https://doi.org/10.1093/database/baac026},
doi = {10.1093/DATABASE/BAAC026},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/MercierBCGBABBC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MacDougallVSPZH21,
author = {Alistair MacDougall and
Vladimir Volynkin and
Rabie Saidi and
Diego Poggioli and
Hermann Zellner and
Emma Hatton{-}Ellis and
Vishal Joshi and
Claire O'Donovan and
Sandra E. Orchard and
Andrea H. Auchincloss and
Delphine Baratin and
Jerven T. Bolleman and
Elisabeth Coudert and
Edouard De Castro and
Chantal Hulo and
Patrick Masson and
Ivo Pedruzzi and
Catherine Rivoire and
Cecilia N. Arighi and
Qinghua Wang and
Chuming Chen and
Hongzhan Huang and
John Garavelli and
C. R. Vinayaka and
Lai{-}Su Yeh and
Darren A. Natale and
Kati Laiho and
Maria Jesus Martin and
Alexandre Renaux and
Klemens Pichler},
title = {UniRule: a unified rule resource for automatic annotation in the UniProt
Knowledgebase},
journal = {Bioinform.},
volume = {36},
number = {22-23},
pages = {5562},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa663},
doi = {10.1093/BIOINFORMATICS/BTAA663},
timestamp = {Wed, 10 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MacDougallVSPZH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BatemanMOMAAABB21,
author = {Alex Bateman and
Maria Jesus Martin and
Sandra E. Orchard and
Michele Magrane and
Rahat Agivetova and
Shadab Ahmad and
Emanuele Alpi and
Emily H. Bowler{-}Barnett and
Ramona Britto and
Borisas Bursteinas and
Hema Bye{-}A{-}Jee and
Ray Coetzee and
Austra Cukura and
Alan W. Sousa da Silva and
Paul Denny and
Tunca Dogan and
Thankgod Ebenezer and
Jun Fan and
Leyla Jael Garc{\'{\i}}a Castro and
Penelope Garmiri and
George E. Georghiou and
Leonardo Gonzales and
Emma Hatton{-}Ellis and
Abdulrahman Hussein and
Alexandr Ignatchenko and
Giuseppe Insana and
Rizwan Ishtiaq and
Petteri Jokinen and
Vishal Joshi and
Dushyanth Jyothi and
Antonia Lock and
Rodrigo Lopez and
Aurelien Luciani and
Jie Luo and
Yvonne Lussi and
Alistair MacDougall and
F{\'{a}}bio Madeira and
Mahdi Mahmoudy and
Manuela Menchi and
Alok Mishra and
Katie Moulang and
Andrew Nightingale and
Carla Susana Oliveira and
Sangya Pundir and
Guoying Qi and
Shriya Raj and
Daniel Rice and
Milagros Rodr{\'{\i}}guez{-}L{\'{o}}pez and
Rabie Saidi and
Joseph Sampson and
Tony Sawford and
Elena Speretta and
Edward Turner and
Nidhi Tyagi and
Preethi Vasudev and
Vladimir Volynkin and
Kate Warner and
Xavier Watkins and
Rossana Zaru and
Hermann Zellner and
Alan J. Bridge and
Sylvain Poux and
Nicole Redaschi and
Lucila Aimo and
Ghislaine Argoud{-}Puy and
Andrea H. Auchincloss and
Kristian B. Axelsen and
Parit Bansal and
Delphine Baratin and
Marie{-}Claude Blatter and
Jerven T. Bolleman and
Emmanuel Boutet and
Lionel Breuza and
Cristina Casals{-}Casas and
Edouard De Castro and
Kamal Chikh Echioukh and
Elisabeth Coudert and
B{\'{e}}atrice A. Cuche and
Mikael Doche and
Dolnide Dornevil and
Anne Estreicher and
Maria Livia Famiglietti and
Marc Feuermann and
Elisabeth Gasteiger and
Sebastien Gehant and
Vivienne Baillie Gerritsen and
Arnaud Gos and
Nadine Gruaz{-}Gumowski and
Ursula Hinz and
Chantal Hulo and
Nevila Hyka{-}Nouspikel and
Florence Jungo and
Guillaume Keller and
Arnaud Kerhornou and
Vicente Lara and
Philippe Le Mercier and
Damien Lieberherr and
Thierry Lombardot and
Xavier Martin and
Patrick Masson and
Anne Morgat and
Teresa Batista Neto and
Salvo Paesano and
Ivo Pedruzzi and
Sandrine Pilbout and
Lucille Pourcel and
Monica Pozzato and
Manuela Pruess and
Catherine Rivoire and
Christian J. A. Sigrist and
Karin Sonesson and
Andre Stutz and
Shyamala Sundaram and
Michael Tognolli and
Laure Verbregue and
Cathy H. Wu and
Cecilia N. Arighi and
Leslie Arminski and
Chuming Chen and
Yongxing Chen and
John S. Garavelli and
Hongzhan Huang and
Kati Laiho and
Peter B. McGarvey and
Darren A. Natale and
Karen Ross and
C. R. Vinayaka and
Qinghua Wang and
Yuqi Wang and
Lai{-}Su Yeh and
Jian Zhang and
Patrick Ruch and
Douglas Teodoro},
title = {UniProt: the universal protein knowledgebase in 2021},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D480--D489},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1100},
doi = {10.1093/NAR/GKAA1100},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BatemanMOMAAABB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorgatLCANGBBGC20,
author = {Anne Morgat and
Thierry Lombardot and
Elisabeth Coudert and
Kristian B. Axelsen and
Teresa Batista Neto and
Sebastien Gehant and
Parit Bansal and
Jerven T. Bolleman and
Elisabeth Gasteiger and
Edouard De Castro and
Delphine Baratin and
Monica Pozzato and
Ioannis Xenarios and
Sylvain Poux and
Nicole Redaschi and
Alan J. Bridge and
The UniProt Consortium},
title = {Enzyme annotation in UniProtKB using Rhea},
journal = {Bioinform.},
volume = {36},
number = {6},
pages = {1896--1901},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz817},
doi = {10.1093/BIOINFORMATICS/BTZ817},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorgatLCANGBBGC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/VosKMKKKMTYYWAAAABBBBBCCD20,
author = {Rutger A. Vos and
Toshiaki Katayama and
Hiroyuki Mishima and
Shin Kawano and
Shuichi Kawashima and
Jin{-}Dong Kim and
Yuki Moriya and
Toshiaki Tokimatsu and
Atsuko Yamaguchi and
Yasunori Yamamoto and
Hongyan Wu and
Peter Amstutz and
Erick Antezana and
Nobuyuki P. Aoki and
Kazuharu Arakawa and
Jerven T. Bolleman and
Evan E. Bolton and
Raoul Jean Pierre Bonnal and
Hidemasa Bono and
Kees Burger and
Hirokazu Chiba and
Kevin Bretonnel Cohen and
Eric W. Deutsch and
Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis and
Gang Fu and
Takatomo Fujisawa and
Atsushi Fukushima and
Alexander Garc{\'{\i}}a Castro and
Naohisa Goto and
Tudor Groza and
Colin Hercus and
Robert Hoehndorf and
Kotone Itaya and
Nick S. Juty and
Takeshi Kawashima and
Jee{-}Hyub Kim and
Akira R. Kinjo and
Masaaki Kotera and
Kouji Kozaki and
Sadahiro Kumagai and
Tatsuya Kushida and
Thomas L{\"{u}}tteke and
Masaaki Matsubara and
Joe Miyamoto and
Attayeb Mohsen and
Hiroshi Mori and
Yuki Naito and
Takeru Nakazato and
Jeremy NguyenXuan and
Kozo Nishida and
Naoki Nishida and
Hiroyo Nishide and
Soichi Ogishima and
Tazro Ohta and
Shujiro Okuda and
Benedict Paten and
Jean{-}Luc Perret and
Philip Prathipati and
Pjotr Prins and
N{\'{u}}ria Queralt{-}Rosinach and
Daisuke Shinmachi and
Shinya Suzuki and
Tsuyosi Tabata and
Terue Takatsuki and
Kieron R. Taylor and
Mark Thompson and
Ikuo Uchiyama and
Bruno Vieira and
Chih{-}Hsuan Wei and
Mark D. Wilkinson and
Issaku Yamada and
Ryota Yamanaka and
Kazutoshi Yoshitake and
Akiyasu C. Yoshizawa and
Michel Dumontier and
Kenjiro Kosaki and
Toshihisa Takagi},
title = {BioHackathon 2015: Semantics of data for life sciences and reproducible
research},
journal = {F1000Research},
volume = {9},
pages = {136},
year = {2020},
url = {https://doi.org/10.12688/f1000research.18236.1},
doi = {10.12688/F1000RESEARCH.18236.1},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/f1000research/VosKMKKKMTYYWAAAABBBBBCCD20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/HeumosB19,
author = {Simon Heumos and
Jerven T. Bolleman},
editor = {Ronald Cornet and
Andra Waagmeester},
title = {SemanticGenomeGraphs},
booktitle = {12th International Conference on Semantic Web Applications and Tools
for Health Care and Life Sciences},
series = {{CEUR} Workshop Proceedings},
volume = {2849},
pages = {167--168},
publisher = {CEUR-WS.org},
year = {2019},
url = {https://ceur-ws.org/Vol-2849/paper-34.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:02 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/HeumosB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/KatayamaKMKKKOWWYYAAABBBB19,
author = {Toshiaki Katayama and
Shuichi Kawashima and
Gos Micklem and
Shin Kawano and
Jin{-}Dong Kim and
Simon Kocbek and
Shinobu Okamoto and
Yue Wang and
Hongyan Wu and
Atsuko Yamaguchi and
Yasunori Yamamoto and
Erick Antezana and
Kiyoko F. Aoki{-}Kinoshita and
Kazuharu Arakawa and
Masaki Banno and
Joachim Baran and
Jerven T. Bolleman and
Raoul Jean Pierre Bonnal and
Hidemasa Bono and
Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis and
Robert M. Buels and
Matthew P. Campbell and
Hirokazu Chiba and
Peter J. A. Cock and
Kevin Bretonnel Cohen and
Michel Dumontier and
Takatomo Fujisawa and
Toyofumi Fujiwara and
Leyla J. Garc{\'{\i}}a and
Pascale Gaudet and
Emi Hattori and
Robert Hoehndorf and
Kotone Itaya and
Maori Ito and
Daniel Jamieson and
Simon Jupp and
Nick S. Juty and
Alex Kalderimis and
Fumihiro Kato and
Hideya Kawaji and
Takeshi Kawashima and
Akira R. Kinjo and
Yusuke Komiyama and
Masaaki Kotera and
Tatsuya Kushida and
James Malone and
Masaaki Matsubara and
Satoshi Mizuno and
Sayaka Mizutani and
Hiroshi Mori and
Yuki Moriya and
Katsuhiko Murakami and
Takeru Nakazato and
Hiroyo Nishide and
Yosuke Nishimura and
Soichi Ogishima and
Tazro Ohta and
Shujiro Okuda and
Hiromasa Ono and
Yasset P{\'{e}}rez{-}Riverol and
Daisuke Shinmachi and
Andrea Splendiani and
Francesco Strozzi and
Shinya Suzuki and
Junichi Takehara and
Mark Thompson and
Toshiaki Tokimatsu and
Ikuo Uchiyama and
Karin Verspoor and
Mark D. Wilkinson and
Sarala M. Wimalaratne and
Issaku Yamada and
Nozomi Yamamoto and
Masayuki Yarimizu and
Shoko Kawamoto and
Toshihisa Takagi},
title = {BioHackathon series in 2013 and 2014: improvements of semantic interoperability
in life science data and services},
journal = {F1000Research},
volume = {8},
pages = {1677},
year = {2019},
url = {https://doi.org/10.12688/f1000research.18238.1},
doi = {10.12688/F1000RESEARCH.18238.1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/KatayamaKMKKKOWWYYAAABBBB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerj-cs/WilkinsonVSCSKG17,
author = {Mark D. Wilkinson and
Ruben Verborgh and
Luiz Olavo Bonino da Silva Santos and
Tim Clark and
Morris A. Swertz and
Fleur D. L. Kelpin and
Alasdair J. G. Gray and
Erik A. Schultes and
Erik M. van Mulligen and
Paolo Ciccarese and
Arnold Kuzniar and
Anand Gavai and
Mark Thompson and
Rajaram Kaliyaperumal and
Jerven T. Bolleman and
Michel Dumontier},
title = {Interoperability and FAIRness through a novel combination of Web technologies},
journal = {PeerJ Comput. Sci.},
volume = {3},
pages = {e110},
year = {2017},
url = {https://doi.org/10.7717/peerj-cs.110},
doi = {10.7717/PEERJ-CS.110},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerj-cs/WilkinsonVSCSKG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/WilkinsonVSCSKG17,
author = {Mark D. Wilkinson and
Ruben Verborgh and
Luiz Olavo Bonino da Silva Santos and
Tim Clark and
Morris A. Swertz and
Fleur D. L. Kelpin and
Alasdair J. G. Gray and
Erik A. Schultes and
Erik M. van Mulligen and
Paolo Ciccarese and
Arnold Kuzniar and
Anand Gavai and
Mark Thompson and
Rajaram Kaliyaperumal and
Jerven T. Bolleman and
Michel Dumontier},
title = {Interoperability and FAIRness through a novel combination of Web technologies},
journal = {PeerJ Prepr.},
volume = {5},
pages = {e2522},
year = {2017},
url = {https://doi.org/10.7287/peerj.preprints.2522v2},
doi = {10.7287/PEERJ.PREPRINTS.2522V2},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerjpre/WilkinsonVSCSKG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BollemanMSBDBBH16,
author = {Jerven T. Bolleman and
Christopher J. Mungall and
Francesco Strozzi and
Joachim Baran and
Michel Dumontier and
Raoul Jean Pierre Bonnal and
Robert M. Buels and
Robert Hoehndorf and
Takatomo Fujisawa and
Toshiaki Katayama and
Peter J. A. Cock},
title = {{FALDO:} a semantic standard for describing the location of nucleotide
and protein feature annotation},
journal = {J. Biomed. Semant.},
volume = {7},
pages = {39},
year = {2016},
url = {https://doi.org/10.1186/s13326-016-0067-z},
doi = {10.1186/S13326-016-0067-Z},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/BollemanMSBDBBH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/WilkinsonVSCSKG16,
author = {Mark D. Wilkinson and
Ruben Verborgh and
Luiz Olavo Bonino da Silva Santos and
Tim Clark and
Morris A. Swertz and
Fleur D. L. Kelpin and
Alasdair J. G. Gray and
Erik A. Schultes and
Erik M. van Mulligen and
Paolo Ciccarese and
Mark Thompson and
Rajaram Kaliyaperumal and
Jerven T. Bolleman and
Michel Dumontier},
title = {Interoperability and FAIRness through a novel combination of Web technologies},
journal = {PeerJ Prepr.},
volume = {4},
pages = {e2522},
year = {2016},
url = {https://doi.org/10.7287/peerj.preprints.2522v1},
doi = {10.7287/PEERJ.PREPRINTS.2522V1},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerjpre/WilkinsonVSCSKG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WimalaratneBJKD15,
author = {Sarala M. Wimalaratne and
Jerven T. Bolleman and
Nick S. Juty and
Toshiaki Katayama and
Michel Dumontier and
Nicole Redaschi and
Nicolas Le Nov{\`{e}}re and
Henning Hermjakob and
Camille Laibe},
title = {SPARQL-enabled identifier conversion with Identifiers.org},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1875--1877},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv064},
doi = {10.1093/BIOINFORMATICS/BTV064},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WimalaratneBJKD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JuppMBBDGGGLRWMNPBJ14,
author = {Simon Jupp and
James Malone and
Jerven T. Bolleman and
Marco Brandizi and
Mark Davies and
Leyla J. Garc{\'{\i}}a and
Anna Gaulton and
Sebastien Gehant and
Camille Laibe and
Nicole Redaschi and
Sarala M. Wimalaratne and
Maria Jesus Martin and
Nicolas Le Nov{\`{e}}re and
Helen E. Parkinson and
Ewan Birney and
Andrew M. Jenkinson},
title = {The {EBI} {RDF} platform: linked open data for the life sciences},
journal = {Bioinform.},
volume = {30},
number = {9},
pages = {1338--1339},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btt765},
doi = {10.1093/BIOINFORMATICS/BTT765},
timestamp = {Wed, 21 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JuppMBBDGGGLRWMNPBJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/KatayamaWAKYYOKKWWKOBKAAAAABBBBCCCCCC14,
author = {Toshiaki Katayama and
Mark D. Wilkinson and
Kiyoko F. Aoki{-}Kinoshita and
Shuichi Kawashima and
Yasunori Yamamoto and
Atsuko Yamaguchi and
Shinobu Okamoto and
Shin Kawano and
Jin{-}Dong Kim and
Yue Wang and
Hongyan Wu and
Yoshinobu Kano and
Hiromasa Ono and
Hidemasa Bono and
Simon Kocbek and
Jan Aerts and
Yukie Akune and
Erick Antezana and
Kazuharu Arakawa and
Bruno Aranda and
Joachim Baran and
Jerven T. Bolleman and
Raoul Jean Pierre Bonnal and
Pier Luigi Buttigieg and
Matthew P. Campbell and
Yi{-}an Chen and
Hirokazu Chiba and
Peter J. A. Cock and
Kevin Bretonnel Cohen and
Alexandru Constantin},
title = {BioHackathon series in 2011 and 2012: penetration of ontology and
linked data in life science domains},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {5},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-5},
doi = {10.1186/2041-1480-5-5},
timestamp = {Tue, 02 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/KatayamaWAKYYOKKWWKOBKAAAAABBBBCCCCCC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/WuFYBY14,
author = {Hongyan Wu and
Toyofumi Fujiwara and
Yasunori Yamamoto and
Jerven T. Bolleman and
Atsuko Yamaguchi},
title = {BioBenchmark Toyama 2012: an evaluation of the performance of triple
stores on biological data},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {32},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-32},
doi = {10.1186/2041-1480-5-32},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/WuFYBY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Aoki-KinoshitaBCKKLMORSSSSTYPN13,
author = {Kiyoko F. Aoki{-}Kinoshita and
Jerven T. Bolleman and
Matthew P. Campbell and
Shin Kawano and
Jin{-}Dong Kim and
Thomas L{\"{u}}tteke and
Masaaki Matsubara and
Shujiro Okuda and
Ren{\'{e}} Ranzinger and
Hiromichi Sawaki and
Toshihide Shikanai and
Daisuke Shinmachi and
Yoshinori Suzuki and
Philip V. Toukach and
Issaku Yamada and
Nicolle H. Packer and
Hisashi Narimatsu},
title = {Introducing glycomics data into the Semantic Web},
journal = {J. Biomed. Semant.},
volume = {4},
pages = {39},
year = {2013},
url = {https://doi.org/10.1186/2041-1480-4-39},
doi = {10.1186/2041-1480-4-39},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/Aoki-KinoshitaBCKKLMORSSSSTYPN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/BollemanGR12,
author = {Jerven T. Bolleman and
Sebastien Gehant and
Nicole Redaschi},
editor = {Adrian Paschke and
Albert Burger and
Paolo Romano and
M. Scott Marshall and
Andrea Splendiani},
title = {Catching Inconsistencies with the Semantic Web: {A} Biocuration Case
Study},
booktitle = {Proceedings of the 5th International Workshop on Semantic Web Applications
and Tools for Life Sciences, Paris, France, November 28-30, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {952},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-952/paper\_2.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:02 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/BollemanGR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/BollemanGGR10,
author = {Jerven T. Bolleman and
Alain Gateau and
Sebastien Gehant and
Nicole Redaschi},
editor = {Albert Burger and
M. Scott Marshall and
Paolo Romano and
Adrian Paschke and
Andrea Splendiani},
title = {Provenance and Evidence in UniProtKB},
booktitle = {Proceedings of the Workshop on Semantic Web Applications and Tools
for Life Sciences, Berlin, Germany, December 10, 2010},
series = {{CEUR} Workshop Proceedings},
volume = {698},
publisher = {CEUR-WS.org},
year = {2010},
url = {https://ceur-ws.org/Vol-698/poster4.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:03 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/BollemanGGR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1012-1660,
author = {Jerven T. Bolleman and
Alain Gateau and
Sebastien Gehant and
Nicole Redaschi},
title = {Provenance and evidence in UniProtKB},
journal = {CoRR},
volume = {abs/1012.1660},
year = {2010},
url = {http://arxiv.org/abs/1012.1660},
eprinttype = {arXiv},
eprint = {1012.1660},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1012-1660.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/BollemanK09,
author = {Jerven T. Bolleman and
Thomas Kappler},
editor = {M. Scott Marshall and
Albert Burger and
Paolo Romano and
Adrian Paschke and
Andrea Splendiani},
title = {Weekend Triple Billionaire},
booktitle = {Proceedings of the Workshop on Semantic Web Applications and Tools
for Life Sciences, Amsterdam, The Netherlands, November 20, 2009},
series = {{CEUR} Workshop Proceedings},
volume = {559},
publisher = {CEUR-WS.org},
year = {2009},
url = {https://ceur-ws.org/Vol-559/HighlightPoster1.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:02 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/BollemanK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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