BibTeX records: John M. Berrisford

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@article{DBLP:journals/biodb/ChoudharyFBCIPPSTVWYPMHKVB24,
  author       = {Preeti Choudhary and
                  Zukang Feng and
                  John M. Berrisford and
                  Henry Chao and
                  Yasuyo Ikegawa and
                  Ezra Peisach and
                  Dennis W. Piehl and
                  James Smith and
                  Ahsan Tanweer and
                  Mihaly Varadi and
                  John D. Westbrook and
                  Jasmine Young and
                  Ardan Patwardhan and
                  Kyle L. Morris and
                  Jeffrey C. Hoch and
                  Genji Kurisu and
                  Sameer Velankar and
                  Stephen K. Burley},
  title        = {{PDB} NextGen Archive: centralizing access to integrated annotations
                  and enriched structural information by the Worldwide Protein Data
                  Bank},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2024},
  year         = {2024},
  url          = {https://doi.org/10.1093/database/baae041},
  doi          = {10.1093/DATABASE/BAAE041},
  timestamp    = {Sun, 04 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/ChoudharyFBCIPPSTVWYPMHKVB24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/VaradiAABCDNNPT22,
  author       = {Mihaly Varadi and
                  Stephen Anyango and
                  David R. Armstrong and
                  John M. Berrisford and
                  Preeti Choudhary and
                  Mandar S. Deshpande and
                  Nurul Nadzirin and
                  Sreenath Nair and
                  Luk{\'{a}}s Pravda and
                  Ahsan Tanweer and
                  Bissan Al{-}Lazikani and
                  Claudia Andreini and
                  Geoffrey J. Barton and
                  David Bednar and
                  Karel Berka and
                  Tom L. Blundell and
                  Kelly Brock and
                  Jos{\'{e}} Mar{\'{\i}}a Carazo and
                  Jir{\'{\i}} Damborsk{\'{y}} and
                  Alessia David and
                  Sucharita Dey and
                  Roland L. Dunbrack Jr. and
                  Juan Fern{\'{a}}ndez{-}Recio and
                  Franca Fraternali and
                  Toby J. Gibson and
                  Manuela Helmer{-}Citterich and
                  David Hoksza and
                  Thomas A. Hopf and
                  David Jakubec and
                  Natarajan Kannan and
                  Radoslav Kriv{\'{a}}k and
                  Manjeet Kumar and
                  Emmanuel D. Levy and
                  Nir London and
                  Jos{\'{e}} Ram{\'{o}}n Mac{\'{\i}}as and
                  Mallur Srivatsan Madhusudhan and
                  Debora S. Marks and
                  Lennart Martens and
                  Stuart A McGowan and
                  Jake E. McGreig and
                  Vivek Modi and
                  R. Gonzalo Parra and
                  Gerardo Pepe and
                  Damiano Piovesan and
                  Jaime Prilusky and
                  Valeria Putignano and
                  Leandro G. Radusky and
                  Pathmanaban Ramasamy and
                  Atilio O. Rausch and
                  Nathalie Reuter and
                  Luis A. Rodriguez and
                  Nathan J. Rollins and
                  Antonio Rosato and
                  Pawel Rubach and
                  Luis Serrano and
                  Gulzar Singh and
                  Petr Skoda and
                  Carlos Oscar S{\'{a}}nchez Sorzano and
                  Jan Stourac and
                  Joanna I. Sulkowska and
                  Radka Svobodov{\'{a}} Varekov{\'{a}} and
                  Natalia Tichshenko and
                  Silvio C. E. Tosatto and
                  Wim F. Vranken and
                  Mark N. Wass and
                  Dandan Xue and
                  Daniel Zaidman and
                  Janet M. Thornton and
                  Michael J. E. Sternberg and
                  Christine A. Orengo and
                  Sameer Velankar},
  title        = {PDBe-KB: collaboratively defining the biological context of structural
                  data},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{D1}},
  pages        = {534--542},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkab988},
  doi          = {10.1093/NAR/GKAB988},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/VaradiAABCDNNPT22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/NairVNPAMBAGV21,
  author       = {Sreenath Nair and
                  Mihaly Varadi and
                  Nurul Nadzirin and
                  Luk{\'{a}}s Pravda and
                  Stephen Anyango and
                  Saqib Mir and
                  John M. Berrisford and
                  David R. Armstrong and
                  Aleksandras Gutmanas and
                  Sameer Velankar},
  title        = {PDBe aggregated {API:} programmatic access to an integrative knowledge
                  graph of molecular structure data},
  journal      = {Bioinform.},
  volume       = {37},
  number       = {21},
  pages        = {3950--3952},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btab424},
  doi          = {10.1093/BIOINFORMATICS/BTAB424},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NairVNPAMBAGV21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/ArmstrongBCGACC20,
  author       = {David R. Armstrong and
                  John M. Berrisford and
                  Matthew J. Conroy and
                  Aleksandras Gutmanas and
                  Stephen Anyango and
                  Preeti Choudhary and
                  Alice R. Clark and
                  Jose M. Dana and
                  Mandar S. Deshpande and
                  Roisin Dunlop and
                  Paul J. Gane and
                  Romana G{\'{a}}borov{\'{a}} and
                  Deepti Gupta and
                  Pauline Haslam and
                  Jaroslav Koca and
                  Lora Mak and
                  Saqib Mir and
                  Abhik Mukhopadhyay and
                  Nurul Nadzirin and
                  Sreenath Nair and
                  Typhaine Paysan{-}Lafosse and
                  Luk{\'{a}}s Pravda and
                  David Sehnal and
                  Osman Salih and
                  Oliver S. Smart and
                  James Tolchard and
                  Mihaly Varadi and
                  Radka Svobodov{\'{a}} Varekov{\'{a}} and
                  Hossam Zaki and
                  Gerard J. Kleywegt and
                  Sameer Velankar},
  title        = {PDBe: improved findability of macromolecular structure data in the
                  {PDB}},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Database-Issue},
  pages        = {D335--D343},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkz990},
  doi          = {10.1093/NAR/GKZ990},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/ArmstrongBCGACC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/VaradiBDNGAPAAB20,
  author       = {Mihaly Varadi and
                  John M. Berrisford and
                  Mandar S. Deshpande and
                  Sreenath Nair and
                  Aleksandras Gutmanas and
                  David R. Armstrong and
                  Luk{\'{a}}s Pravda and
                  Bissan Al{-}Lazikani and
                  Stephen Anyango and
                  Geoffrey J. Barton and
                  Karel Berka and
                  Tom L. Blundell and
                  Neera Borkakoti and
                  Jose M. Dana and
                  Sayoni Das and
                  Sucharita Dey and
                  Patrizio Di Micco and
                  Franca Fraternali and
                  Toby J. Gibson and
                  Manuela Helmer{-}Citterich and
                  David Hoksza and
                  Liang{-}Chin Huang and
                  Rishabh Jain and
                  Harry Jubb and
                  Christos C. Kannas and
                  Natarajan Kannan and
                  Jaroslav Koca and
                  Radoslav Kriv{\'{a}}k and
                  Manjeet Kumar and
                  Emmanuel D. Levy and
                  F{\'{a}}bio Madeira and
                  M. S. Madhusudhan and
                  Henry J. Martell and
                  Stuart A. MacGowan and
                  Jake E. McGreig and
                  Saqib Mir and
                  Abhik Mukhopadhyay and
                  Luca Parca and
                  Typhaine Paysan{-}Lafosse and
                  Leandro G. Radusky and
                  Ant{\'{o}}nio J. M. Ribeiro and
                  Luis Serrano and
                  Ian Sillitoe and
                  Gulzar Singh and
                  Petr Skoda and
                  Radka Svobodov{\'{a}} Varekov{\'{a}} and
                  Jonathan D. Tyzack and
                  Alfonso Valencia and
                  Eloy D. Villasclaras{-}Fern{\'{a}}ndez and
                  Wim F. Vranken and
                  Mark N. Wass and
                  Janet M. Thornton and
                  Michael J. E. Sternberg and
                  Christine A. Orengo and
                  Sameer Velankar},
  title        = {PDBe-KB: a community-driven resource for structural and functional
                  annotations},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Database-Issue},
  pages        = {D344--D353},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkz853},
  doi          = {10.1093/NAR/GKZ853},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/VaradiBDNGAPAAB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:reference/bioinf/ArmstrongBCCGM19,
  author       = {David R. Armstrong and
                  John M. Berrisford and
                  Matthew J. Conroy and
                  Alice R. Clark and
                  Deepti Gupta and
                  Abhik Mukhopadhyay},
  editor       = {Shoba Ranganathan and
                  Michael Gribskov and
                  Kenta Nakai and
                  Christian Sch{\"{o}}nbach},
  title        = {Protein Structure Databases},
  booktitle    = {Encyclopedia of Bioinformatics and Computational Biology - Volume
                  2},
  pages        = {460--471},
  publisher    = {Elsevier},
  year         = {2019},
  url          = {https://doi.org/10.1016/b978-0-12-809633-8.20280-x},
  doi          = {10.1016/B978-0-12-809633-8.20280-X},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/reference/bioinf/ArmstrongBCCGM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/biodb/YoungWFPPSSBSOG18,
  author       = {Jasmine Young and
                  John D. Westbrook and
                  Zukang Feng and
                  Ezra Peisach and
                  Irina Persikova and
                  Raul Sala and
                  Sanchayita Sen and
                  John M. Berrisford and
                  Jawahar Swaminathan and
                  Thomas J. Oldfield and
                  Aleksandras Gutmanas and
                  Reiko Igarashi and
                  David R. Armstrong and
                  Kumaran Baskaran and
                  Li Chen and
                  Minyu Chen and
                  Alice R. Clark and
                  Luigi Di Costanzo and
                  Dimitris Dimitropoulos and
                  Guanghua Gao and
                  Sutapa Ghosh and
                  Swanand P. Gore and
                  Vladimir Guranovic and
                  Pieter M. S. Hendrickx and
                  Brian P. Hudson and
                  Yasuyo Ikegawa and
                  Yumiko Kengaku and
                  Catherine L. Lawson and
                  Yuhe Liang and
                  Lora Mak and
                  Abhik Mukhopadhyay and
                  Buvaneswari Coimbatore Narayanan and
                  Kayoko Nishiyama and
                  Ardan Patwardhan and
                  Gaurav Sahni and
                  Eduardo Sanz{-}Garc{\'{\i}}a and
                  Junko Sato and
                  Monica Sekharan and
                  Chenghua Shao and
                  Oliver S. Smart and
                  Lihua Tan and
                  Glen van Ginkel and
                  Huanwang Yang and
                  Marina Zhuravleva and
                  John L. Markley and
                  Haruki Nakamura and
                  Genji Kurisu and
                  Gerard J. Kleywegt and
                  Sameer Velankar and
                  Helen M. Berman and
                  Stephen K. Burley},
  title        = {Worldwide Protein Data Bank biocuration supporting open access to
                  high-quality 3D structural biology data},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2018},
  pages        = {bay002},
  year         = {2018},
  url          = {https://doi.org/10.1093/database/bay002},
  doi          = {10.1093/DATABASE/BAY002},
  timestamp    = {Sun, 04 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/YoungWFPPSSBSOG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/MirAAABCCDDGGHM18,
  author       = {Saqib Mir and
                  Younes Alhroub and
                  Stephen Anyango and
                  David R. Armstrong and
                  John M. Berrisford and
                  Alice R. Clark and
                  Matthew J. Conroy and
                  Jose M. Dana and
                  Mandar S. Deshpande and
                  Deepti Gupta and
                  Aleksandras Gutmanas and
                  Pauline Haslam and
                  Lora Mak and
                  Abhik Mukhopadhyay and
                  Nurul Nadzirin and
                  Typhaine Paysan{-}Lafosse and
                  David Sehnal and
                  Sanchayita Sen and
                  Oliver S. Smart and
                  Mihaly Varadi and
                  Gerard J. Kleywegt and
                  Sameer Velankar},
  title        = {PDBe: towards reusable data delivery infrastructure at protein data
                  bank in Europe},
  journal      = {Nucleic Acids Res.},
  volume       = {46},
  number       = {Database-Issue},
  pages        = {D486--D492},
  year         = {2018},
  url          = {https://doi.org/10.1093/nar/gkx1070},
  doi          = {10.1093/NAR/GKX1070},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/MirAAABCCDDGGHM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/VelankarGABBCDG16,
  author       = {Sameer Velankar and
                  Glen van Ginkel and
                  Younes Alhroub and
                  Gary M. Battle and
                  John M. Berrisford and
                  Matthew J. Conroy and
                  Jose M. Dana and
                  Swanand P. Gore and
                  Aleksandras Gutmanas and
                  Pauline Haslam and
                  Pieter M. S. Hendrickx and
                  Ingvar C. Lagerstedt and
                  Saqib Mir and
                  Manuel A. Fernandez Montecelo and
                  Abhik Mukhopadhyay and
                  Thomas J. Oldfield and
                  Ardan Patwardhan and
                  Eduardo Sanz{-}Garc{\'{\i}}a and
                  Sanchayita Sen and
                  Robert A. Slowley and
                  Michael E. Wainwright and
                  Mandar S. Deshpande and
                  Andrii Iudin and
                  Gaurav Sahni and
                  Jos{\'{e}} Salavert Torres and
                  Miriam Hirshberg and
                  Lora Mak and
                  Nurul Nadzirin and
                  David R. Armstrong and
                  Alice R. Clark and
                  Oliver S. Smart and
                  Paul K. Korir and
                  Gerard J. Kleywegt},
  title        = {PDBe: improved accessibility of macromolecular structure data from
                  {PDB} and {EMDB}},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {385--395},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv1047},
  doi          = {10.1093/NAR/GKV1047},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/VelankarGABBCDG16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/biodb/SenYBCCDCGGHIKLPPMNSSSSTZ14,
  author       = {Sanchayita Sen and
                  Jasmine Young and
                  John M. Berrisford and
                  Minyu Chen and
                  Matthew J. Conroy and
                  Shuchismita Dutta and
                  Luigi Di Costanzo and
                  Guanghua Gao and
                  Sutapa Ghosh and
                  Brian P. Hudson and
                  Reiko Igarashi and
                  Yumiko Kengaku and
                  Yuhe Liang and
                  Ezra Peisach and
                  Irina Persikova and
                  Abhik Mukhopadhyay and
                  Buvaneswari Coimbatore Narayanan and
                  Gaurav Sahni and
                  Junko Sato and
                  Monica Sekharan and
                  Chenghua Shao and
                  Lihua Tan and
                  Marina Zhuravleva},
  title        = {Small molecule annotation for the Protein Data Bank},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2014},
  year         = {2014},
  url          = {https://doi.org/10.1093/database/bau116},
  doi          = {10.1093/DATABASE/BAU116},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biodb/SenYBCCDCGGHIKLPPMNSSSSTZ14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/GutmanasABBBCDMGGHHHHLMMOPRSSSSVWK14,
  author       = {Aleksandras Gutmanas and
                  Younes Alhroub and
                  Gary M. Battle and
                  John M. Berrisford and
                  Estelle Bochet and
                  Matthew J. Conroy and
                  Jose M. Dana and
                  Manuel A. Fernandez Montecelo and
                  Glen van Ginkel and
                  Swanand P. Gore and
                  Pauline Haslam and
                  Rowan Hatherley and
                  Pieter M. S. Hendrickx and
                  Miriam Hirshberg and
                  Ingvar C. Lagerstedt and
                  Saqib Mir and
                  Abhik Mukhopadhyay and
                  Thomas J. Oldfield and
                  Ardan Patwardhan and
                  Luana Rinaldi and
                  Gaurav Sahni and
                  Eduardo Sanz{-}Garc{\'{\i}}a and
                  Sanchayita Sen and
                  Robert A. Slowley and
                  Sameer Velankar and
                  Michael E. Wainwright and
                  Gerard J. Kleywegt},
  title        = {PDBe: Protein Data Bank in Europe},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Database-Issue},
  pages        = {285--291},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gkt1180},
  doi          = {10.1093/NAR/GKT1180},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/GutmanasABBBCDMGGHHHHLMMOPRSSSSVWK14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

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