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ORCIDBibTeX records: Andreas Bender
@article{DBLP:journals/bmcbi/HosseiniGeramiHCLEBB23,
author = {Layla Hosseini{-}Gerami and
Ixavier Alonzo Higgins and
David A. Collier and
Emma Laing and
David Evans and
Howard Broughton and
Andreas Bender},
title = {Benchmarking causal reasoning algorithms for gene expression-based
compound mechanism of action analysis},
journal = {{BMC} Bioinform.},
volume = {24},
number = {1},
pages = {154},
year = {2023},
url = {https://doi.org/10.1186/s12859-023-05277-1},
doi = {10.1186/S12859-023-05277-1},
timestamp = {Mon, 24 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HosseiniGeramiHCLEBB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HosseiniGeramiHLBCB23,
author = {Layla Hosseini{-}Gerami and
Rosa D. Hernansaiz{-}Ballesteros and
Anika Liu and
Howard Broughton and
David A. Collier and
Andreas Bender},
title = {{MAVEN:} compound mechanism of action analysis and visualisation using
transcriptomics and compound structure data in R/Shiny},
journal = {{BMC} Bioinform.},
volume = {24},
number = {1},
pages = {344},
year = {2023},
url = {https://doi.org/10.1186/s12859-023-05416-8},
doi = {10.1186/S12859-023-05416-8},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HosseiniGeramiHLBCB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cogsci/HendrixSBB23,
author = {Peter Hendrix and
Ching Chu Sun and
Henry Brighton and
Andreas Bender},
title = {On the Connection Between Language Change and Language Processing},
journal = {Cogn. Sci.},
volume = {47},
number = {12},
year = {2023},
url = {https://doi.org/10.1111/cogs.13384},
doi = {10.1111/COGS.13384},
timestamp = {Sat, 06 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cogsci/HendrixSBB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ficn/RosenfelderSHPFWKB23,
author = {Martin Justinus Rosenfelder and
Myra Spiliopoulou and
Burkhard Hoppenstedt and
R{\"{u}}diger Pryss and
Patrick Fissler and
Mario della Piedra Walter and
Iris{-}Tatjana Kolassa and
Andreas Bender},
title = {Stability of mental motor-imagery classification in {EEG} depends
on the choice of classifier model and experiment design, but not on
signal preprocessing},
journal = {Frontiers Comput. Neurosci.},
volume = {17},
year = {2023},
url = {https://doi.org/10.3389/fncom.2023.1142948},
doi = {10.3389/FNCOM.2023.1142948},
timestamp = {Mon, 01 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ficn/RosenfelderSHPFWKB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KanevZKBLBWGEW23,
author = {Georgi K. Kanev and
Yaran Zhang and
Albert J. Kooistra and
Andreas Bender and
Rob Leurs and
David Bailey and
Thomas W{\"{u}}rdinger and
Chris de Graaf and
Iwan J. P. de Esch and
Bart A. Westerman},
title = {Predicting the target landscape of kinase inhibitors using 3D convolutional
neural networks},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {9},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1011301},
doi = {10.1371/JOURNAL.PCBI.1011301},
timestamp = {Sat, 14 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/KanevZKBLBWGEW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LiuHMB22,
author = {Anika Liu and
Namshik Han and
Jordi Mu{\~{n}}oz{-}Muriedas and
Andreas Bender},
title = {Deriving time-concordant event cascades from gene expression data:
{A} case study for Drug-Induced Liver Injury {(DILI)}},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {6},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1010148},
doi = {10.1371/JOURNAL.PCBI.1010148},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/LiuHMB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiSZB18,
author = {Changge Ji and
Fredrik Svensson and
Azedine Zoufir and
Andreas Bender},
title = {eMolTox: prediction of molecular toxicity with confidence},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2508--2509},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty135},
doi = {10.1093/BIOINFORMATICS/BTY135},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiSZB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/copa/NorinderSAB17,
author = {Ulf Norinder and
Fredrik Svensson and
Avid M. Afzal and
Andreas Bender},
editor = {Alex Gammerman and
Vladimir Vovk and
Zhiyuan Luo and
Harris Papadopoulos},
title = {Maximizing Gain in {HTS} Screening Using Conformal Prediction},
booktitle = {Conformal and Probabilistic Prediction and Applications, {COPA} 2017,
13-16 June 2017, Stockholm, Sweden},
series = {Proceedings of Machine Learning Research},
volume = {60},
pages = {103--117},
publisher = {{PMLR}},
year = {2017},
url = {http://proceedings.mlr.press/v60/norinder17a.html},
timestamp = {Mon, 07 Aug 2023 13:29:45 +0200},
biburl = {https://dblp.org/rec/conf/copa/NorinderSAB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/modelsward/BenderBK14,
author = {Andreas Bender and
Stefan Bozic and
Ivan Kondov},
editor = {Lu{\'{\i}}s Ferreira Pires and
Slimane Hammoudi and
Joaquim Filipe and
Rui C{\'{e}}sar das Neves},
title = {An EMF-based Toolkit for Creation of Domain-specific Data Services},
booktitle = {{MODELSWARD} 2014 - Proceedings of the 2nd International Conference
on Model-Driven Engineering and Software Development, Lisbon, Portugal,
7 - 9 January, 2014},
pages = {30--40},
publisher = {SciTePress},
year = {2014},
url = {https://doi.org/10.5220/0004701900300040},
doi = {10.5220/0004701900300040},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/modelsward/BenderBK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/ChiddarwarBR13,
author = {Rucha K. Chiddarwar and
Andreas Bender and
Sebastian Rohrer},
title = {In silico target prediction: identification of on- and off-targets
for crop protection agents},
journal = {J. Cheminformatics},
volume = {5},
number = {{S-1}},
pages = {18},
year = {2013},
url = {https://doi.org/10.1186/1758-2946-5-S1-P18},
doi = {10.1186/1758-2946-5-S1-P18},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/ChiddarwarBR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/BenderPBK13,
author = {Andreas Bender and
Angela Poschlad and
Stefan Bozic and
Ivan Kondov},
editor = {Vassil Alexandrov and
Michael Lees and
Valeria V. Krzhizhanovskaya and
Jack J. Dongarra and
Peter M. A. Sloot},
title = {A Service-oriented Framework for Integration of Domain-specific Data
Models in Scientific Workflows},
booktitle = {Proceedings of the International Conference on Computational Science,
{ICCS} 2013, Barcelona, Spain, 5-7 June, 2013},
series = {Procedia Computer Science},
volume = {18},
pages = {1087--1096},
publisher = {Elsevier},
year = {2013},
url = {https://doi.org/10.1016/j.procs.2013.05.274},
doi = {10.1016/J.PROCS.2013.05.274},
timestamp = {Wed, 12 Jul 2023 15:16:18 +0200},
biburl = {https://dblp.org/rec/conf/iccS/BenderPBK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dagstuhl-reports/BenderGHS13,
author = {Andreas Bender and
Hinrich W. H. G{\"{o}}hlmann and
Sepp Hochreiter and
Ziv Shkedy},
title = {Computational Methods Aiding Early-Stage Drug Design (Dagstuhl Seminar
13212)},
journal = {Dagstuhl Reports},
volume = {3},
number = {5},
pages = {78--94},
year = {2013},
url = {https://doi.org/10.4230/DagRep.3.5.78},
doi = {10.4230/DAGREP.3.5.78},
timestamp = {Wed, 07 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dagstuhl-reports/BenderGHS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/YongyeBM10,
author = {Austin B. Yongye and
Andreas Bender and
Karina Mart{\'{\i}}nez{-}Mayorga},
title = {Dynamic clustering threshold reduces conformer ensemble size while
maintaining a biologically relevant ensemble},
journal = {J. Comput. Aided Mol. Des.},
volume = {24},
number = {8},
pages = {675--686},
year = {2010},
url = {https://doi.org/10.1007/s10822-010-9365-1},
doi = {10.1007/S10822-010-9365-1},
timestamp = {Thu, 16 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcamd/YongyeBM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/Medina-FrancoMBMGPH09,
author = {Jos{\'{e}} L. Medina{-}Franco and
Karina Mart{\'{\i}}nez{-}Mayorga and
Andreas Bender and
Ray M. Mar{\'{\i}}n and
Marc A. Giulianotti and
Clemencia Pinilla and
Richard A. Houghten},
title = {Characterization of Activity Landscapes Using 2D and 3D Similarity
Methods: \emph{Consensus Activity Cliffs}},
journal = {J. Chem. Inf. Model.},
volume = {49},
number = {2},
pages = {477--491},
year = {2009},
url = {https://doi.org/10.1021/ci800379q},
doi = {10.1021/CI800379Q},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/Medina-FrancoMBMGPH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/WilsonBKC09,
author = {J. Anthony Wilson and
Andreas Bender and
Taner Kaya and
Paul A. Clemons},
title = {Alpha Shapes Applied to Molecular Shape Characterization Exhibit Novel
Properties Compared to Established Shape Descriptors},
journal = {J. Chem. Inf. Model.},
volume = {49},
number = {10},
pages = {2231--2241},
year = {2009},
url = {https://doi.org/10.1021/ci900190z},
doi = {10.1021/CI900190Z},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/WilsonBKC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/ChopraB08,
author = {Paras Chopra and
Andreas Bender},
title = {A Quantitative \emph{bgl} Operon Model for \emph{E. coli} Requires
BglF Conformational Change for Sugar Transport},
journal = {Trans. Comp. Sys. Biology},
volume = {9},
pages = {1--22},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88765-2\_1},
doi = {10.1007/978-3-540-88765-2\_1},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/ChopraB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/ChopraB07,
author = {Paras Chopra and
Andreas Bender},
title = {Evolved Cellular Automata for Protein Secondary Structure Prediction
Imitate the Determinants for Folding Observed in Nature},
journal = {Silico Biol.},
volume = {7},
number = {1},
pages = {87--93},
year = {2007},
url = {http://content.iospress.com/articles/in-silico-biology/isb00277},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/ChopraB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/LiBPL07,
author = {Qingliang Li and
Andreas Bender and
Jianfeng Pei and
Luhua Lai},
title = {A Large Descriptor Set and a Probabilistic Kernel-Based Classifier
Significantly Improve Druglikeness Classification},
journal = {J. Chem. Inf. Model.},
volume = {47},
number = {5},
pages = {1776--1786},
year = {2007},
url = {https://doi.org/10.1021/ci700107y},
doi = {10.1021/CI700107Y},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/LiBPL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/KarthikeyanB05,
author = {Muthukumarasamy Karthikeyan and
Andreas Bender},
title = {Encoding and Decoding Graphical Chemical Structures as Two-Dimensional
{(PDF417)} Barcodes},
journal = {J. Chem. Inf. Model.},
volume = {45},
number = {3},
pages = {572--580},
year = {2005},
url = {https://doi.org/10.1021/ci049758i},
doi = {10.1021/CI049758I},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/KarthikeyanB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/crypto/BenderC89,
author = {Andreas Bender and
Guy Castagnoli},
editor = {Gilles Brassard},
title = {On the Implementation of Elliptic Curve Cryptosystems},
booktitle = {Advances in Cryptology - {CRYPTO} '89, 9th Annual International Cryptology
Conference, Santa Barbara, California, USA, August 20-24, 1989, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {435},
pages = {186--192},
publisher = {Springer},
year = {1989},
url = {https://doi.org/10.1007/0-387-34805-0\_18},
doi = {10.1007/0-387-34805-0\_18},
timestamp = {Tue, 01 Jun 2021 15:21:29 +0200},
biburl = {https://dblp.org/rec/conf/crypto/BenderC89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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