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ORCIDBibTeX records: Ali Bashir
@article{DBLP:journals/corr/abs-2211-14312,
author = {Zahra Shamsi and
Drew Bryant and
Jacob Wilson and
Xiaoyu Qu and
Avinava Dubey and
Konik Kothari and
Mostafa Dehghani and
Mariya Chavarha and
Valerii Likhosherstov and
Brian Williams and
Michael Frumkin and
Fred Appelbaum and
Krzysztof Choromanski and
Ali Bashir and
Min Fang},
title = {Automated Deep Aberration Detection from Chromosome Karyotype Images},
journal = {CoRR},
volume = {abs/2211.14312},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2211.14312},
doi = {10.48550/ARXIV.2211.14312},
eprinttype = {arXiv},
eprint = {2211.14312},
timestamp = {Wed, 30 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2211-14312.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RodriguezRSB20,
author = {Oscar L. Rodriguez and
Anna M. Ritz and
Andrew J. Sharp and
Ali Bashir},
title = {MsPAC: a tool for haplotype-phased structural variant detection},
journal = {Bioinform.},
volume = {36},
number = {3},
pages = {922--924},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz618},
doi = {10.1093/BIOINFORMATICS/BTZ618},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RodriguezRSB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SevimBCM16,
author = {Volkan Sevim and
Ali Bashir and
Chen{-}Shan Chin and
Karen H. Miga},
title = {Alpha-CENTAURI: assessing novel centromeric repeat sequence variation
with long read sequencing},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {1921--1924},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw101},
doi = {10.1093/BIOINFORMATICS/BTW101},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SevimBCM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RitzBSHHR14,
author = {Anna M. Ritz and
Ali Bashir and
Suzanne S. Sindi and
David Hsu and
Iman Hajirasouliha and
Benjamin J. Raphael},
title = {Characterization of structural variants with single molecule and hybrid
sequencing approaches},
journal = {Bioinform.},
volume = {30},
number = {24},
pages = {3458--3466},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu714},
doi = {10.1093/BIOINFORMATICS/BTU714},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RitzBSHHR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UmmatB14,
author = {Ajay Ummat and
Ali Bashir},
title = {Resolving complex tandem repeats with long reads},
journal = {Bioinform.},
volume = {30},
number = {24},
pages = {3491--3498},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu437},
doi = {10.1093/BIOINFORMATICS/BTU437},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/UmmatB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BeckmannKFB14,
author = {Noam D. Beckmann and
Sashank Karri and
Gang Fang and
Ali Bashir},
title = {Detecting epigenetic motifs in low coverage and metagenomics settings},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-9}},
pages = {S16},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S9-S16},
doi = {10.1186/1471-2105-15-S9-S16},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BeckmannKFB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LoBBB11,
author = {Christine Lo and
Ali Bashir and
Vikas Bansal and
Vineet Bafna},
title = {Strobe sequence design for haplotype assembly},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S24},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S24},
doi = {10.1186/1471-2105-12-S1-S24},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LoBBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/RaphaelSRB11,
author = {Benjamin J. Raphael and
Suzanne S. Sindi and
Anna M. Ritz and
Ali Bashir},
editor = {Ion I. Mandoiu and
Satoru Miyano and
Teresa M. Przytycka and
Sanguthevar Rajasekaran},
title = {Workshop: Characterization of structural variants with next generation
{DNA} sequencing},
booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5,
2011},
pages = {275},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICCABS.2011.5729929},
doi = {10.1109/ICCABS.2011.5729929},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/RaphaelSRB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RitzBR10,
author = {Anna M. Ritz and
Ali Bashir and
Benjamin J. Raphael},
title = {Structural variation analysis with strobe reads},
journal = {Bioinform.},
volume = {26},
number = {10},
pages = {1291--1298},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq153},
doi = {10.1093/BIOINFORMATICS/BTQ153},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RitzBR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BashirLCRLB10,
author = {Ali Bashir and
Qing Lu and
Dennis Carson and
Benjamin J. Raphael and
Yu{-}Tsueng Liu and
Vineet Bafna},
title = {Optimizing {PCR} Assays for DNA-Based Cancer Diagnostics},
journal = {J. Comput. Biol.},
volume = {17},
number = {3},
pages = {369--381},
year = {2010},
url = {https://doi.org/10.1089/cmb.2009.0203},
doi = {10.1089/CMB.2009.0203},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BashirLCRLB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/basesearch/Bashir09,
author = {Ali Bashir},
title = {Computational methods for analyzing and detecting genomic structural
variation : applications to cancer},
school = {University of California, San Diego, {USA}},
year = {2009},
url = {http://www.escholarship.org/uc/item/9x56z8qw},
timestamp = {Fri, 31 Mar 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/basesearch/Bashir09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SindiHBR09,
author = {Suzanne S. Sindi and
Elena Helman and
Ali Bashir and
Benjamin J. Raphael},
title = {A geometric approach for classification and comparison of structural
variants},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp208},
doi = {10.1093/BIOINFORMATICS/BTP208},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SindiHBR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BashirLCRLB09,
author = {Ali Bashir and
Qing Lu and
Dennis Carson and
Benjamin J. Raphael and
Yu{-}Tsueng Liu and
Vineet Bafna},
editor = {Serafim Batzoglou},
title = {Optimizing {PCR} Assays for {DNA} Based Cancer Diagnostics},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {220--235},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_17},
doi = {10.1007/978-3-642-02008-7\_17},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BashirLCRLB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BashirVCBR08,
author = {Ali Bashir and
Stanislav Volik and
Colin C. Collins and
Vineet Bafna and
Benjamin J. Raphael},
title = {Evaluation of Paired-End Sequencing Strategies for Detection of Genome
Rearrangements in Cancer},
journal = {PLoS Comput. Biol.},
volume = {4},
number = {4},
year = {2008},
url = {https://doi.org/10.1371/journal.pcbi.1000051},
doi = {10.1371/JOURNAL.PCBI.1000051},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BashirVCBR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BashirLRCB07,
author = {Ali Bashir and
Yu{-}Tsueng Liu and
Benjamin J. Raphael and
Dennis Carson and
Vineet Bafna},
title = {Optimization of primer design for the detection of variable genomic
lesions in cancer},
journal = {Bioinform.},
volume = {23},
number = {21},
pages = {2807--2815},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm390},
doi = {10.1093/BIOINFORMATICS/BTM390},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BashirLRCB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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