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BibTeX records: Irina Balaur
@article{DBLP:journals/bioinformatics/RougnyBLM23, author = {Adrien Rougny and Irina Balaur and Augustin Luna and Alexander Mazein}, title = {StonPy: a tool to parse and query collections of {SBGN} maps in a graph database}, journal = {Bioinform.}, volume = {39}, number = {3}, year = {2023}, url = {https://doi.org/10.1093/bioinformatics/btad100}, doi = {10.1093/BIOINFORMATICS/BTAD100}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RougnyBLM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fbinf/MazeinABRWNADGSGKSO23, author = {Alexander Mazein and Marcio Luis Acencio and Irina Balaur and Adrien Rougny and Danielle Welter and Anna Niarakis and Diana Ramirez Ardila and Ugur Dogrusoz and Piotr Gawron and Venkata P. Satagopam and Wei Gu and Andreas Kremer and Reinhard Schneider and Marek Ostaszewski}, title = {A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance}, journal = {Frontiers Bioinform.}, volume = {3}, year = {2023}, url = {https://doi.org/10.3389/fbinf.2023.1197310}, doi = {10.3389/FBINF.2023.1197310}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fbinf/MazeinABRWNADGSGKSO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cordi/WaltemathIMSB23, author = {Dagmar Waltemath and Esther Thea Inau and Lea Michaelis and Venkata P. Satagopam and Irina Balaur}, editor = {York Sure{-}Vetter and Carole A. Goble}, title = {Experiences From FAIRifying Community Data and {FAIR} Infrastructure in Biomedical Research Domains}, booktitle = {1st Conference on Research Data Infrastructure - Connecting Communities, CoRDI 2023, Karlsruhe, Germany, September 12-14, 2023}, publisher = {{TIB} Open Publishing}, year = {2023}, url = {https://doi.org/10.52825/cordi.v1i.415}, doi = {10.52825/CORDI.V1I.415}, timestamp = {Sat, 21 Oct 2023 10:46:27 +0200}, biburl = {https://dblp.org/rec/conf/cordi/WaltemathIMSB23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/BalaurRTMA22, author = {Irina Balaur and Ludovic Roy and Vasundra Tour{\'{e}} and Alexander Mazein and Charles Auffray}, title = {GraphML-SBGN bidirectional converter for metabolic networks}, journal = {J. Integr. Bioinform.}, volume = {19}, number = {4}, year = {2022}, url = {https://doi.org/10.1515/jib-2022-0030}, doi = {10.1515/JIB-2022-0030}, timestamp = {Tue, 31 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jib/BalaurRTMA22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SiebenhallerNMB20, author = {Martin Siebenhaller and Sune S. Nielsen and Fintan McGee and Irina Balaur and Charles Auffray and Alexander Mazein}, title = {Human-like layout algorithms for signalling hypergraphs: outlining requirements}, journal = {Briefings Bioinform.}, volume = {21}, number = {1}, pages = {62--72}, year = {2020}, url = {https://doi.org/10.1093/bib/bby099}, doi = {10.1093/BIB/BBY099}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/SiebenhallerNMB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BalaurRMKDBZ20, author = {Irina Balaur and Ludovic Roy and Alexander Mazein and S. G{\"{o}}kberk Karaca and Ugur Dogrusoz and Emmanuel Barillot and Andrei Yu. Zinovyev}, title = {cd2sbgnml: bidirectional conversion between CellDesigner and {SBGN} formats}, journal = {Bioinform.}, volume = {36}, number = {8}, pages = {2620--2622}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btz969}, doi = {10.1093/BIOINFORMATICS/BTZ969}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BalaurRMKDBZ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BalaurRMKDBZ20a, author = {Irina Balaur and Ludovic Roy and Alexander Mazein and S. G{\"{o}}kberk Karaca and Ugur Dogrusoz and Emmanuel Barillot and Andrei Yu. Zinovyev}, title = {cd2sbgnml: bidirectional conversion between CellDesigner and {SBGN} formats}, journal = {Bioinform.}, volume = {36}, number = {19}, pages = {4975}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btaa528}, doi = {10.1093/BIOINFORMATICS/BTAA528}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BalaurRMKDBZ20a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/RougnyTMBCBDMDB19, author = {Adrien Rougny and Vasundra Tour{\'{e}} and Stuart L. Moodie and Irina Balaur and Tobias Czauderna and Hanna Borlinghaus and Ugur Dogrusoz and Alexander Mazein and Andreas Dr{\"{a}}ger and Michael L. Blinov and Alice Vill{\'{e}}ger and Robin Haw and Emek Demir and Huaiyu Mi and Anatoly A. Sorokin and Falk Schreiber and Augustin Luna}, title = {Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0}, journal = {J. Integr. Bioinform.}, volume = {16}, number = {2}, year = {2019}, url = {https://doi.org/10.1515/jib-2019-0022}, doi = {10.1515/JIB-2019-0022}, timestamp = {Tue, 14 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/RougnyTMBCBDMDB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MeulderLBMCABSP18, author = {Bertrand De Meulder and Diane Lefaudeux and Aruna T. Bansal and Alexander Mazein and Amphun Chaiboonchoe and Hassan Ahmed and Irina Balaur and Mansoor A. S. Saqi and Johann Pellet and St{\'{e}}phane Ballereau and Nathana{\"{e}}l Lemonnier and Kai Sun and Ioannis Pandis and Xian Yang and Manohara Batuwitage and Kosmas Kretsos and Jonathan van Eyll and Alun Bedding and Timothy Davison and Paul Dodson and Christopher Larminie and Anthony D. Postle and Julie Corfield and Ratko Djukanovic and Kian Fan Chung and Ian M. Adcock and Yike Guo and Peter J. Sterk and Alexander Manta and Anthony Rowe and Fr{\'{e}}d{\'{e}}ric Baribaud and Charles Auffray}, title = {A computational framework for complex disease stratification from multiple large-scale datasets}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {60:1--60:23}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0556-z}, doi = {10.1186/S12918-018-0556-Z}, timestamp = {Mon, 22 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MeulderLBMCABSP18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BalaurMSLR17, author = {Irina Balaur and Alexander Mazein and Mansoor A. S. Saqi and Artem Lysenko and Christopher J. Rawlings}, title = {Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks}, journal = {Bioinform.}, volume = {33}, number = {7}, pages = {1096--1098}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btw731}, doi = {10.1093/BIOINFORMATICS/BTW731}, timestamp = {Tue, 28 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BalaurMSLR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BalaurSBLMRRA17, author = {Irina Balaur and Mansoor A. S. Saqi and Ana Barat and Artem Lysenko and Alexander Mazein and Christopher J. Rawlings and Heather J. Ruskin and Charles Auffray}, title = {EpiGeNet: {A} Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer}, journal = {J. Comput. Biol.}, volume = {24}, number = {10}, pages = {969--980}, year = {2017}, url = {https://doi.org/10.1089/cmb.2016.0095}, doi = {10.1089/CMB.2016.0095}, timestamp = {Tue, 21 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/BalaurSBLMRRA17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodatamining/LysenkoRSMRA16, author = {Artem Lysenko and Irina A. Roznovat and Mansoor A. S. Saqi and Alexander Mazein and Christopher J. Rawlings and Charles Auffray}, title = {Representing and querying disease networks using graph databases}, journal = {BioData Min.}, volume = {9}, pages = {23}, year = {2016}, url = {https://doi.org/10.1186/s13040-016-0102-8}, doi = {10.1186/S13040-016-0102-8}, timestamp = {Tue, 21 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/biodatamining/LysenkoRSMRA16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ToureMWBSHPA16, author = {Vasundra Tour{\'{e}} and Alexander Mazein and Dagmar Waltemath and Irina Balaur and Mansoor A. S. Saqi and Ron Henkel and Johann Pellet and Charles Auffray}, title = {{STON:} exploring biological pathways using the {SBGN} standard and graph databases}, journal = {{BMC} Bioinform.}, volume = {17}, pages = {494:1--494:9}, year = {2016}, url = {https://doi.org/10.1186/s12859-016-1394-x}, doi = {10.1186/S12859-016-1394-X}, timestamp = {Tue, 21 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ToureMWBSHPA16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/RoznovatR14, author = {Irina A. Roznovat and Heather J. Ruskin}, editor = {Huiru Jane Zheng and Werner Dubitzky and Xiaohua Hu and Jin{-}Kao Hao and Daniel P. Berrar and Kwang{-}Hyun Cho and Yadong Wang and David R. Gilbert}, title = {LogisticCrypt - {A} logistic model of intestinal crypt structure}, booktitle = {2014 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2014, Belfast, United Kingdom, November 2-5, 2014}, pages = {14--21}, publisher = {{IEEE} Computer Society}, year = {2014}, url = {https://doi.org/10.1109/BIBM.2014.6999254}, doi = {10.1109/BIBM.2014.6999254}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/RoznovatR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/RoznovatR14a, author = {Irina A. Roznovat and Heather J. Ruskin}, editor = {Huiru Jane Zheng and Werner Dubitzky and Xiaohua Hu and Jin{-}Kao Hao and Daniel P. Berrar and Kwang{-}Hyun Cho and Yadong Wang and David R. Gilbert}, title = {A computational analysis on methylation inhibition during intestinal cancer initiation}, booktitle = {2014 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2014, Belfast, United Kingdom, November 2-5, 2014}, pages = {22--29}, publisher = {{IEEE} Computer Society}, year = {2014}, url = {https://doi.org/10.1109/BIBM.2014.6999255}, doi = {10.1109/BIBM.2014.6999255}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/RoznovatR14a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/RuskinPR14, author = {Heather J. Ruskin and Dimitri Perrin and Irina A. Roznovat}, editor = {Huiru Jane Zheng and Werner Dubitzky and Xiaohua Hu and Jin{-}Kao Hao and Daniel P. Berrar and Kwang{-}Hyun Cho and Yadong Wang and David R. Gilbert}, title = {Building cross-scale models of epigenetic mechanisms}, booktitle = {2014 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2014, Belfast, United Kingdom, November 2-5, 2014}, pages = {30--37}, publisher = {{IEEE} Computer Society}, year = {2014}, url = {https://doi.org/10.1109/BIBM.2014.6999256}, doi = {10.1109/BIBM.2014.6999256}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/RuskinPR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ems/RoznovatR13, author = {Irina A. Roznovat and Heather J. Ruskin}, editor = {David Al{-}Dabass and Alessandra Orsoni and Zheng Xie}, title = {Methylation Inhibitors and Carcinogens in an Agent-Based Model for Colon Crypt Dynamics during Cancer Development}, booktitle = {Seventh UKSim/AMSS European Modelling Symposium, {EMS} 2013, 20-22 November, 2013, Manchester {UK}}, pages = {152--157}, publisher = {{IEEE}}, year = {2013}, url = {https://doi.org/10.1109/EMS.2013.27}, doi = {10.1109/EMS.2013.27}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/ems/RoznovatR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ercim/RoznovatR13, author = {Irina{-}Afrodita Roznovat and Heather J. Ruskin}, title = {Interdependencies of Genetic and Epigenetic Events in a Computational Model for Colon Cancer Dynamics}, journal = {{ERCIM} News}, volume = {2013}, number = {95}, year = {2013}, url = {http://ercim-news.ercim.eu/en95/ri/interdependencies-of-genetic-and-epigenetic-events-in-a-computational-model-for-colon-cancer-dynamics}, timestamp = {Wed, 22 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ercim/RoznovatR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/RoznovatR12, author = {Irina A. Roznovat and Heather J. Ruskin}, title = {A computational model for genetic and epigenetic signals in colon cancer}, booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine Workshops, {BIBMW} 2012, Philadelphia, USA, October 4-7, 2012}, pages = {188--195}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/BIBMW.2012.6470302}, doi = {10.1109/BIBMW.2012.6470302}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/RoznovatR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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