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ORCIDBibTeX records: Dukka B. KC
@inproceedings{DBLP:conf/icpram/ItakuraBS24,
author = {Kendai Itakura and
Dukka Bahadur and
Hiroto Saigo},
editor = {Modesto Castrill{\'{o}}n Santana and
Maria De Marsico and
Ana L. N. Fred},
title = {Benchmarking a Wide Range of Unsupervised Learning Methods for Detecting
Anomaly in Blast Furnace},
booktitle = {Proceedings of the 13th International Conference on Pattern Recognition
Applications and Methods, {ICPRAM} 2024, Rome, Italy, February 24-26,
2024},
pages = {641--650},
publisher = {{SCITEPRESS}},
year = {2024},
url = {https://doi.org/10.5220/0012310800003654},
doi = {10.5220/0012310800003654},
timestamp = {Tue, 02 Apr 2024 14:39:54 +0200},
biburl = {https://dblp.org/rec/conf/icpram/ItakuraBS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PratyushPSK23,
author = {Pawel Pratyush and
Suresh Pokharel and
Hiroto Saigo and
Dukka B. KC},
title = {pLMSNOSite: an ensemble-based approach for predicting protein S-nitrosylation
sites by integrating supervised word embedding and embedding from
pre-trained protein language model},
journal = {{BMC} Bioinform.},
volume = {24},
number = {1},
pages = {41},
year = {2023},
url = {https://doi.org/10.1186/s12859-023-05164-9},
doi = {10.1186/S12859-023-05164-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PratyushPSK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sensors/LeePMKLY23,
author = {Yongkuk Lee and
Suresh Pokharel and
Asra Al Muslim and
Dukka B. KC and
Kyoung Hag Lee and
Woon{-}Hong Yeo},
title = {Experimental Study: Deep Learning-Based Fall Monitoring among Older
Adults with Skin-Wearable Electronics},
journal = {Sensors},
volume = {23},
number = {8},
pages = {3983},
year = {2023},
url = {https://doi.org/10.3390/s23083983},
doi = {10.3390/S23083983},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sensors/LeePMKLY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaccarthyZZK22,
author = {Elijah A. MacCarthy and
Chengxin Zhang and
Yang Zhang and
Dukka B. KC},
title = {{GPU-I-TASSER:} a {GPU} accelerated {I-TASSER} protein structure prediction
tool},
journal = {Bioinform.},
volume = {38},
number = {6},
pages = {1754--1755},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btab871},
doi = {10.1093/BIOINFORMATICS/BTAB871},
timestamp = {Wed, 27 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaccarthyZZK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThapaCMRNSB22,
author = {Niraj Thapa and
Meenal Chaudhari and
Sean McManus and
Kaushik Roy and
Robert H. Newman and
Hiroto Saigo and
K. C. Dukka B.},
title = {Correction: DeepSuccinylSite: a deep learning based approach for protein
succinylation site prediction},
journal = {{BMC} Bioinform.},
volume = {23},
number = {1},
pages = {349},
year = {2022},
url = {https://doi.org/10.1186/s12859-022-04844-2},
doi = {10.1186/S12859-022-04844-2},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ThapaCMRNSB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThapaCMRNSK20,
author = {Niraj Thapa and
Meenal Chaudhari and
Sean McManus and
Kaushik Roy and
Robert H. Newman and
Hiroto Saigo and
Dukka B. KC},
title = {DeepSuccinylSite: a deep learning based approach for protein succinylation
site prediction},
journal = {{BMC} Bioinform.},
volume = {21-S},
number = {3},
pages = {63},
year = {2020},
url = {https://doi.org/10.1186/s12859-020-3342-z},
doi = {10.1186/S12859-020-3342-Z},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ThapaCMRNSK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fi/ThapaLKGR20,
author = {Niraj Thapa and
Zhipeng Liu and
Dukka B. KC and
Balakrishna Gokaraju and
Kaushik Roy},
title = {Comparison of Machine Learning and Deep Learning Models for Network
Intrusion Detection Systems},
journal = {Future Internet},
volume = {12},
number = {10},
pages = {167},
year = {2020},
url = {https://doi.org/10.3390/fi12100167},
doi = {10.3390/FI12100167},
timestamp = {Mon, 10 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fi/ThapaLKGR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/IsmailSB18,
author = {Hamid D. Ismail and
Hiroto Saigo and
K. C. Dukka B.},
title = {{RF-NR:} Random Forest Based Approach for Improved Classification
of Nuclear Receptors},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {15},
number = {6},
pages = {1844--1852},
year = {2018},
url = {https://doi.org/10.1109/TCBB.2017.2773063},
doi = {10.1109/TCBB.2017.2773063},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/IsmailSB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/B17,
author = {K. C. Dukka B.},
title = {Recent advances in sequence-based protein structure prediction},
journal = {Briefings Bioinform.},
volume = {18},
number = {6},
pages = {1021--1032},
year = {2017},
url = {https://doi.org/10.1093/bib/bbw070},
doi = {10.1093/BIB/BBW070},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/B17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WhiteISB17,
author = {Clarence White and
Hamid D. Ismail and
Hiroto Saigo and
K. C. Dukka B.},
title = {CNN-BLPred: a Convolutional neural network based predictor for {\(\beta\)}-Lactamases
{(BL)} and their classes},
journal = {{BMC} Bioinform.},
volume = {18},
number = {16},
pages = {221--232},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1972-6},
doi = {10.1186/S12859-017-1972-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WhiteISB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/JonesIKNB15,
author = {Ahoi Jones and
Hamid D. Ismail and
Jung H. Kim and
Robert H. Newman and
K. C. Dukka B.},
editor = {Jun Huan and
Satoru Miyano and
Amarda Shehu and
Xiaohua Tony Hu and
Bin Ma and
Sanguthevar Rajasekaran and
Vijay K. Gombar and
Matthieu{-}P. Schapranow and
Illhoi Yoo and
Jiayu Zhou and
Brian Chen and
Vinay Pai and
Brian G. Pierce},
title = {RF-Phos: Random forest-based prediction of phosphorylation sites},
booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
pages = {135--140},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/BIBM.2015.7359670},
doi = {10.1109/BIBM.2015.7359670},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/JonesIKNB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/IsmailJKNB15,
author = {Hamid D. Ismail and
Ahoi Jones and
Jung H. Kim and
Robert H. Newman and
K. C. Dukka B.},
title = {Phosphorylation sites prediction using Random Forest},
booktitle = {5th {IEEE} International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2015, Miami, FL, USA, October 15-17,
2015},
pages = {1--6},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/ICCABS.2015.7344726},
doi = {10.1109/ICCABS.2015.7344726},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/IsmailJKNB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gecco/KordmahallehSHBG14,
author = {Mina Moradi Kordmahalleh and
Mohammad Gorji Sefidmazgi and
Abdollah Homaifar and
K. C. Dukka Bahadur and
Anthony Guiseppi{-}Elie},
editor = {Dirk V. Arnold and
Enrique Alba},
title = {Time-series forecasting with evolvable partially connected artificial
neural network},
booktitle = {Genetic and Evolutionary Computation Conference, {GECCO} '14, Vancouver,
BC, Canada, July 12-16, 2014, Companion Material Proceedings},
pages = {79--80},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2598394.2598435},
doi = {10.1145/2598394.2598435},
timestamp = {Wed, 13 Jul 2022 16:15:15 +0200},
biburl = {https://dblp.org/rec/conf/gecco/KordmahallehSHBG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/KordmahallehHB13,
author = {Mina Moradi Kordmahalleh and
Abdollah Homaifar and
K. C. Dukka Bahadur},
title = {Hierarchical multi-label gene function prediction using adaptive mutation
in crowding niching},
booktitle = {13th {IEEE} International Conference on BioInformatics and BioEngineering,
{BIBE} 2013, Chania, Greece, November 10-13, 2013},
pages = {1--6},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBE.2013.6701563},
doi = {10.1109/BIBE.2013.6701563},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/KordmahallehHB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KcL11,
author = {K. C. Dukka Bahadur and
Dennis R. Livesay},
title = {Topology Improves Phylogenetic Motif Functional Site Predictions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {8},
number = {1},
pages = {226--233},
year = {2011},
url = {https://doi.org/10.1109/TCBB.2009.60},
doi = {10.1109/TCBB.2009.60},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KcL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BahadurL08,
author = {K. C. Dukka Bahadur and
Dennis R. Livesay},
title = {Improving position-specific predictions of protein functional sites
using phylogenetic motifs},
journal = {Bioinform.},
volume = {24},
number = {20},
pages = {2308--2316},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn454},
doi = {10.1093/BIOINFORMATICS/BTN454},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BahadurL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/jp/C06,
author = {Dukka Bahadur},
title = {Clique-based algorithms for protein structure prediction},
school = {Kyoto University, Japan},
year = {2006},
url = {https://ci.nii.ac.jp/naid/500000345149},
timestamp = {Wed, 05 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/jp/C06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ieicet/AkutsuHBTSH06,
author = {Tatsuya Akutsu and
Morihiro Hayashida and
Dukka Bahadur and
Etsuji Tomita and
Jun'ichi Suzuki and
Katsuhisa Horimoto},
title = {Dynamic Programming and Clique Based Approaches for Protein Threading
with Profiles and Constraints},
journal = {{IEICE} Trans. Fundam. Electron. Commun. Comput. Sci.},
volume = {89-A},
number = {5},
pages = {1215--1222},
year = {2006},
url = {https://doi.org/10.1093/ietfec/e89-a.5.1215},
doi = {10.1093/IETFEC/E89-A.5.1215},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ieicet/AkutsuHBTSH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/DukkaTSHA06,
author = {K. C. Dukka Bahadur and
Etsuji Tomita and
Jun'ichi Suzuki and
Katsuhisa Horimoto and
Tatsuya Akutsu},
title = {Protein Threading with Profiles and Distance Constraints Using Clique
Based Algorithms},
journal = {J. Bioinform. Comput. Biol.},
volume = {4},
number = {1},
pages = {19--42},
year = {2006},
url = {https://doi.org/10.1142/S0219720006001680},
doi = {10.1142/S0219720006001680},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/DukkaTSHA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/BahadurTSA05,
author = {K. C. Dukka Bahadur and
Etsuji Tomita and
Jun'ichi Suzuki and
Tatsuya Akutsu},
title = {Protein Side-chain Packing Problem: a Maximum Edge-weight Clique Algorithmic
Approach},
journal = {J. Bioinform. Comput. Biol.},
volume = {3},
number = {1},
pages = {103--126},
year = {2005},
url = {https://doi.org/10.1142/S0219720005000904},
doi = {10.1142/S0219720005000904},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/BahadurTSA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/BahadurTSHA05,
author = {Dukka Bahadur and
Etsuji Tomita and
Jun'ichi Suzuki and
Katsuhisa Horimoto and
Tatsuya Akutsu},
editor = {Yi{-}Ping Phoebe Chen and
Limsoon Wong},
title = {Clique-based algorithms for protein threading with profiles and constraints},
booktitle = {Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January
2005, Singapore},
pages = {51--64},
publisher = {Imperial College Press, London},
year = {2005},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2005/camera-ready/146.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/BahadurTSHA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/BahadurATS04,
author = {Dukka Bahadur and
Tatsuya Akutsu and
Etsuji Tomita and
Tomokazu Seki},
editor = {Yi{-}Ping Phoebe Chen},
title = {Protein Side-chain Packing Problem: {A} Maximum Edge-weight Clique
Algorithmic Approach},
booktitle = {Second Asia-Pacific Bioinformatics Conference {(APBC} 2004), January
18-22, 2004, Dunedin, New Zealand},
series = {{CRPIT}},
volume = {29},
pages = {191--200},
publisher = {Australian Computer Society},
year = {2004},
url = {http://crpit.scem.westernsydney.edu.au/abstracts/CRPITV29Dukka.html},
timestamp = {Thu, 25 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/apbc/BahadurATS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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