SIAM Journal on Scientific Computing, Volume 37

Volume 37, Number 1, 2015

Methods and Algorithms for Scientific Computing

• 
  Yin-Liang Huang, Tsung-Ming Huang, Wen-Wei Lin, Wei-Cheng Wang:
  A Null Space Free Jacobi-Davidson Iteration for Maxwell's Operator.
• 
  Eran Treister, Irad Yavneh:
  Non-Galerkin Multigrid Based on Sparsified Smoothed Aggregation.
• 
  Fanhai Zeng, Changpin Li, Fawang Liu, Ian W. Turner:
  Numerical Algorithms for Time-Fractional Subdiffusion Equation with Second-Order Accuracy.
• 
  Yi Chen, John D. Jakeman, Claude Jeffrey Gittelson, Dongbin Xiu:
  Local Polynomial Chaos Expansion for Linear Differential Equations with High Dimensional Random Inputs.
• 
  Qifeng Liao, Karen Willcox:
  A Domain Decomposition Approach for Uncertainty Analysis.
• 
  Yujia Chen, Colin B. Macdonald:
  The Closest Point Method and Multigrid Solvers for Elliptic Equations on Surfaces.
• 
  Adam Chacon, Alexander Vladimirsky:
  A Parallel Two-Scale Method for Eikonal Equations.
• 
  Alessandro Alla, Maurizio Falcone, Dante Kalise:
  An Efficient Policy Iteration Algorithm for Dynamic Programming Equations.
• 
  Gilles Vilmart:
  Postprocessed Integrators for the High Order Integration of Ergodic SDEs.
• 
  Huangxin Chen, Haijun Wu, Xuejun Xu:
  Multilevel Preconditioner with Stable Coarse Grid Corrections for the Helmholtz Equation.
• 
  Christoph Lehrenfeld:
  The Nitsche XFEM-DG Space-Time Method and its Implementation in Three Space Dimensions.
• 
  Xinlong Feng, Tao Tang, Jiang Yang:
  Long Time Numerical Simulations for Phase-Field Problems Using p-Adaptive Spectral Deferred Correction Methods.
• 
  Wanrong Cao, Zhongqiang Zhang, George E. Karniadakis:
  Numerical Methods for Stochastic Delay Differential Equations Via the Wong-Zakai Approximation.
• 
  Gabriele Ciaramella, Alfio Borzì, Gunther Dirr, Daniel Wachsmuth:
  Newton Methods for the Optimal Control of Closed Quantum Spin Systems.
• 
  Loïc Giraldi, Dishi Liu, Hermann G. Matthies, Anthony Nouy:
  To Be or Not to be Intrusive? The Solution of Parametric and Stochastic Equations - Proper Generalized Decomposition.
• 
  Robert I. McLachlan, Matt Wilkins:
  The Multisymplectic Diamond Scheme.
• 
  Daniel Osei-Kuffuor, Ruipeng Li, Yousef Saad:
  Matrix Reordering Using Multilevel Graph Coarsening for ILU Preconditioning.
• 
  Zhiming Gao, Jiming Wu:
  A Second-Order Positivity-Preserving Finite Volume Scheme for Diffusion Equations on General Meshes.
• 
  Jorge Sastre, Jacinto Javier Ibáñez, Emilio Defez, Pedro A. Ruiz:
  New Scaling-Squaring Taylor Algorithms for Computing the Matrix Exponential.
• 
  Awad H. Al-Mohy, Nicholas J. Higham, Samuel D. Relton:
  New Algorithms for Computing the Matrix Sine and Cosine Separately or Simultaneously.
• 
  Zheng Wang, Ming-Jun Lai, Zhaosong Lu, Wei Fan, Hasan Davulcu, Jieping Ye:
  Orthogonal Rank-One Matrix Pursuit for Low Rank Matrix Completion.
• 
  Pedro R. S. Antunes, Rui A. C. Ferreira:
  An Augmented-RBF Method for Solving Fractional Sturm-Liouville Eigenvalue Problems.
• 
  Penghang Yin, Yifei Lou, Qi He, Jack Xin:
  Minimization of ℓ_1-2 for Compressed Sensing.

Computational Methods in Science and Engineering

• 
  Martin Stoll, Tobias Breiten:
  A Low-Rank in Time Approach to PDE-Constrained Optimization.
• 
  Matthias Mayr, Thomas Klöppel, Wolfgang A. Wall, Michael W. Gee:
  A Temporal Consistent Monolithic Approach to Fluid-Structure Interaction Enabling Single Field Predictors.
• 
  L. Harhanen, Nuutti Hyvönen, Helle Majander, Stratos Staboulis:
  Edge-Enhancing Reconstruction Algorithm for Three-Dimensional Electrical Impedance Tomography.
• 
  Marc Boileau, Christophe Chalons, Marc Massot:
  Robust Numerical Coupling of Pressure and Pressureless Gas Dynamics Equations for Eulerian Spray DNS and LES.
• 
  Liping Zhang, Hung-Yuan Fan, Eric King-Wah Chu, Yiming Wei:
  Homotopy for Rational Riccati Equations Arising in Stochastic Optimal Control.

Software and High-Performance Computing

• 
  Vedran Novakovic:
  A Hierarchically Blocked Jacobi SVD Algorithm for Single and Multiple Graphics Processing Units.
• 
  Rebecka Tumblin, Peter Ahrens, Sara Hartse, Robert W. Robey:
  Parallel Compact Hash Algorithms for Computational Meshes.
• 
  Felix Gremse, Andreas Höfter, Lars Ole Schwen, Fabian Kiessling, Uwe Naumann:
  GPU-Accelerated Sparse Matrix-Matrix Multiplication by Iterative Row Merging.
• 
  Carlo Janna, Massimiliano Ferronato, Giuseppe Gambolati:
  The Use of Supernodes in Factored Sparse Approximate Inverse Preconditioning.
• 
  Pedro Gonnet:
  Efficient and Scalable Algorithms for Smoothed Particle Hydrodynamics on Hybrid Shared/Distributed-Memory Architectures.
• 
  Thomas Luu:
  Efficient and Accurate Parallel Inversion of the Gamma Distribution.

Volume 37, Number 2, 2015

Methods and Algorithms for Scientific Computing

• 
  M. V. Rakhuba, Ivan V. Oseledets:
  Fast Multidimensional Convolution in Low-Rank Tensor Formats via Cross Approximation.
• 
  Tao Xiong, Jing-Mei Qiu, Zhengfu Xu:
  High Order Maximum-Principle-Preserving Discontinuous Galerkin Method for Convection-Diffusion Equations.
• 
  Jingchen Liu, Jianfeng Lu, Xiang Zhou:
  Efficient Rare Event Simulation for Failure Problems in Random Media.
• 
  Zlatko Drmac, Serkan Gugercin, Christopher A. Beattie:
  Quadrature-Based Vector Fitting for Discretized H₂ Approximation.
• 
  Lidia Aceto, Cecilia Magherini, Paolo Novati:
  On the Construction and Properties of m-step Methods for FDEs.
• 
  Richard Mikaël Slevinsky, Sheehan Olver:
  On The Use of Conformal Maps for the Acceleration of Convergence of the Trapezoidal Rule and Sinc Numerical Methods.
• 
  Minling Zheng, Fawang Liu, Ian W. Turner, Vo Anh:
  A Novel High Order Space-Time Spectral Method for the Time Fractional Fokker-Planck Equation.
• 
  J. Alex Lee, Jaewook Nam, Matteo Pasquali:
  A New Stabilization of Adaptive Step Trapezoid Rule Based on Finite Difference Interrupts.
• 
  Marcus J. Grote, Michaela Mehlin, Teodora Mitkova:
  Runge-Kutta-Based Explicit Local Time-Stepping Methods for Wave Propagation.
• 
  Eleonora Musharbash, Fabio Nobile, T. Zhou:
  Error Analysis of the Dynamically Orthogonal Approximation of Time Dependent Random PDEs.
• 
  Mingchao Cai, Luca F. Pavarino, Olof B. Widlund:
  Overlapping Schwarz Methods with a Standard Coarse Space for Almost Incompressible Linear Elasticity.
• 
  Eberhard Bänsch, Peter Benner, Jens Saak, Heiko K. Weichelt:
  Riccati-based Boundary Feedback Stabilization of Incompressible Navier-Stokes Flows.
• 
  Marjon J. Ruijter, Cornelis W. Oosterlee:
  A Fourier Cosine Method for an Efficient Computation of Solutions to BSDEs.
• 
  Minghua Chen, Weihua Deng:
  High Order Algorithms for the Fractional Substantial Diffusion Equation with Truncated Lévy Flights.
• 
  Christian Meyer, Andreas Rademacher, Winnifried Wollner:
  Adaptive Optimal Control of the Obstacle Problem.
• 
  Jesper Karlsson, Stig Larsson, Mattias Sandberg, Anders Szepessy, Raúl Tempone:
  An Error Estimate for Symplectic Euler Approximation of Optimal Control Problems.
• 
  Shu-Lin Wu, Tao Zhou:
  Convergence Analysis for Three Parareal Solvers.
• 
  Robert I. Saye:
  High-Order Quadrature Methods for Implicitly Defined Surfaces and Volumes in Hyperrectangles.
• 
  Joachim van der Herten, Ivo Couckuyt, Dirk Deschrijver, Tom Dhaene:
  A Fuzzy Hybrid Sequential Design Strategy for Global Surrogate Modeling of High-Dimensional Computer Experiments.
• 
  Hadi Pouransari, Eric Darve:
  Optimizing the Adaptive Fast Multipole Method for Fractal Sets.
• 
  Cameron Talischi:
  A Family of H(div) Finite Element Approximations on Polygonal Meshes.
• 
  William B. March, Bo Xiao, George Biros:
  ASKIT: Approximate Skeletonization Kernel-Independent Treecode in High Dimensions.
• 
  Jean-David Benamou, Guillaume Carlier, Marco Cuturi, Luca Nenna, Gabriel Peyré:
  Iterative Bregman Projections for Regularized Transportation Problems.

Computational Methods in Science and Engineering

• 
  K. Andrew Cliffe, Joe Collis, Paul Houston:
  Goal-Oriented A Posteriori Error Estimation For The Travel Time Functional In Porous Media Flows.
• 
  Kevin Carlberg, Ray S. Tuminaro, Paul T. Boggs:
  Preserving Lagrangian Structure in Nonlinear Model Reduction with Application to Structural Dynamics.
• 
  Julia Springer, Karsten Urban:
  Adjoint-Based Optimization for Rigid Body Motion in Multiphase Navier-Stokes Flow.
• 
  Craig S. MacDonald, John A. Mackenzie, Alison Ramage, Christopher J. P. Newton:
  Efficient Moving Mesh Methods for Q-Tensor Models of Nematic Liquid Crystals.
• 
  Peter Benner, Tobias Breiten:
  Two-Sided Projection Methods for Nonlinear Model Order Reduction.
• 
  Roberto Carlos Cabrales, Francisco Guillén-González, Juan Vicente Gutiérrez-Santacreu:
  A Time-Splitting Finite-Element Stable Approximation for the Ericksen-Leslie Equations.
• 
  Kai Bittner, Hans Georg Brachtendorf:
  Fast Algorithms for Adaptive Free Knot Spline Approximation Using Nonuniform Biorthogonal Spline Wavelets.
• 
  Sebastiano Boscarino, Raimund Bürger, Pep Mulet, Giovanni Russo, Luis Miguel Villada:
  Linearly Implicit IMEX Runge-Kutta Methods for a Class of Degenerate Convection-Diffusion Problems.
• 
  Julianne M. Chung, Misha E. Kilmer, Dianne P. O'Leary:
  A Framework for Regularization via Operator Approximation.

Software and High-Performance Computing

• 
  Björn Gmeiner, Ulrich Rüde, Holger Stengel, Christian Waluga, Barbara I. Wohlmuth:
  Performance and Scalability of Hierarchical Hybrid Multigrid Solvers for Stokes Systems.
• 
  Edmond Chow, Aftab Patel:
  Fine-Grained Parallel Incomplete LU Factorization.
• 
  Pieter Ghysels, Wim Vanroose:
  Modeling the Performance of Geometric Multigrid Stencils on Multicore Computer Architectures.
• 
  Laura Grigori, Sophie Moufawad:
  Communication Avoiding ILU0 Preconditioner.
• 
  Anastasios Karangelis, Sébastien Loisel:
  Condition Number Estimates and Weak Scaling for 2-Level 2-Lagrange Multiplier Methods for General Domains and Cross Points.
• 
  Patrick Amestoy, Iain S. Duff, Jean-Yves L'Excellent, François-Henry Rouet:
  Parallel Computation of Entries of A^-1.

Volume 37, Number 3, 2015

Methods and Algorithms for Scientific Computing

• 
  Ming Gu:
  Subspace Iteration Randomization and Singular Value Problems.
• 
  Sergiy Zhuk, Jason Frank, Isabelle Herlin, Robert Shorten:
  Data Assimilation for Linear Parabolic Equations: Minimax Projection Method.
• 
  Mengdi Zheng, George E. Karniadakis:
  Numerical Methods for SPDEs with Tempered Stable Processes.
• 
  Francis Filbet, Thomas Rey:
  A Hierarchy of Hybrid Numerical Methods for Multiscale Kinetic Equations.
• 
  Iain S. Duff, Ronan Guivarch, Daniel Ruiz, Mohamed Zenadi:
  The Augmented Block Cimmino Distributed Method.
• 
  Roland Becker, Daniela Capatina, Robert Luce, David Trujillo:
  Stabilized Finite Element Formulation with Domain Decomposition for Incompressible Flows.
• 
  Silvia Bonettini, Alessandro Chiuso, Marco Prato:
  A Scaled Gradient Projection Method for Bayesian Learning in Dynamical Systems.
• 
  Arta A. Jamshidi, Michael J. Kirby:
  A Radial Basis Function Algorithm with Automatic Model Order Determination.
• 
  Tsz Wai Wong, Hongkai Zhao:
  Computing Surface Uniformization Using Discrete Beltrami Flow.
• 
  Anthony P. Austin, Lloyd N. Trefethen:
  Computing Eigenvalues of Real Symmetric Matrices with Rational Filters in Real Arithmetic.
• 
  Lulu Liu, David E. Keyes:
  Field-Split Preconditioned Inexact Newton Algorithms.
• 
  Liang Yan, Ling Guo:
  Stochastic Collocation Algorithms Using l₁-Minimization for Bayesian Solution of Inverse Problems.
• 
  Josef Dick, Frances Y. Kuo, Quoc Thong Le Gia, Christoph Schwab:
  Fast QMC Matrix-Vector Multiplication.
• 
  Patrick Amestoy, Cleve Ashcraft, Olivier Boiteau, Alfredo Buttari, Jean-Yves L'Excellent, Clément Weisbecker:
  Improving Multifrontal Methods by Means of Block Low-Rank Representations.
• 
  Mahadevan Ganesh, Stuart C. Hawkins:
  A High Performance Computing and Sensitivity Analysis Algorithm for Stochastic Many-Particle Wave Scattering.
• 
  Lorella Fatone, Daniele Funaro:
  Optimal Collocation Nodes for Fractional Derivative Operators.
• 
  Shelvean Kapita, Peter Monk, Timothy Warburton:
  Residual-Based Adaptivity and PWDG Methods for the Helmholtz Equation.
• 
  Michael Messner, Martin Schanz, Johannes Tausch:
  An Efficient Galerkin Boundary Element Method for the Transient Heat Equation.
• 
  Lukas Einkemmer, Alexander Ostermann:
  Overcoming Order Reduction in Diffusion-Reaction Splitting. Part 1: Dirichlet Boundary Conditions.
• 
  Gennady Yu. Kulikov, Rüdiger Weiner:
  A Singly Diagonally Implicit Two-Step Peer Triple with Global Error Control for Stiff Ordinary Differential Equations.
• 
  Ning Du, Hong Wang:
  A Fast Finite Element Method for Space-Fractional Dispersion Equations on Bounded Domains in ℝ².

Computational Methods in Science and Engineering

• 
  Yingfei Wang, Kristofer G. Reyes, Keith A. Brown, Chad A. Mirkin, Warren B. Powell:
  Nested-Batch-Mode Learning and Stochastic Optimization with An Application to Sequential MultiStage Testing in Materials Science.
• 
  Praveen Chandrashekar, Christian Klingenberg:
  A Second Order Well-Balanced Finite Volume Scheme for Euler Equations with Gravity.
• 
  D. M. Kelly, Qiang Chen, J. Zang:
  PICIN: A Particle-in-Cell Solver for Incompressible Free Surface Flows with Two-Way Fluid-Solid Coupling.
• 
  Simon Praetorius, Axel Voigt:
  Development and Analysis of a Block-Preconditioner for the Phase-Field Crystal Equation.
• 
  Gudmundur F. Adalsteinsson, Nicholas K.-R. Kevlahan:
  Compressive Sampling for Energy Spectrum Estimation of Turbulent Flows.
• 
  Ebrahim M. Kolahdouz, David Salac:
  Electrohydrodynamics of Three-Dimensional Vesicles: A Numerical Approach.
• 
  Eric de Sturler, Serkan Gugercin, Misha Elena Kilmer, Saifon Chaturantabut, Christopher A. Beattie, Meghan O'Connell:
  Nonlinear Parametric Inversion Using Interpolatory Model Reduction.

Software and High-Performance Computing

• 
  Stefano Berrone, Sandra Pieraccini, Stefano Scialò, Fabio Vicini:
  A Parallel Solver for Large Scale DFN Flow Simulations.
• 
  Ichitaro Yamazaki, Stanimire Tomov, Jack J. Dongarra:
  Mixed-Precision Cholesky QR Factorization and Its Case Studies on Multicore CPU with Multiple GPUs.
• 
  Brendan Harding, Markus Hegland, Jay W. Larson, James Southern:
  Fault Tolerant Computation with the Sparse Grid Combination Technique.
• 
  Debojyoti Ghosh, Emil M. Constantinescu, Jed Brown:
  Efficient Implementation of Nonlinear Compact Schemes on Massively Parallel Platforms.
• 
  Lars Karlsson, Françoise Tisseur:
  Algorithms for Hessenberg-Triangular Reduction of Fiedler Linearization of Matrix Polynomials.
• 
  Nick Vannieuwenhoven, Karl Meerbergen, Raf Vandebril:
  Computing the Gradient in Optimization Algorithms for the CP Decomposition in Constant Memory through Tensor Blocking.

Volume 37, Number 4, 2015

Methods and Algorithms for Scientific Computing

• 
  Mario Amrein, Thomas P. Wihler:
  Fully Adaptive Newton-Galerkin Methods for Semilinear Elliptic Partial Differential Equations.
• 
  Yat Tin Chow, Kazufumi Ito, Keji Liu, Jun Zou:
  Direct Sampling Method for Diffusive Optical Tomography.
• 
  Eric Dow, Qiqi Wang:
  Optimization of Gaussian Random Fields.
• 
  Erik Burman, Susanne Claus, André Massing:
  A Stabilized Cut Finite Element Method for the Three Field Stokes Problem.
• 
  Shuhuang Xiang, Guo He:
  The Fast Implementation of Higher Order Hermite-Fejér Interpolation.
• 
  Wanrong Cao, Zhongqiang Zhang, George E. Karniadakis:
  Time-Splitting Schemes for Fractional Differential Equations I: Smooth Solutions.
• 
  Mohsen Zayernouri, Mark Ainsworth, George E. Karniadakis:
  Tempered Fractional Sturm-Liouville EigenProblems.
• 
  Jason E. Hicken, Alp Dener:
  A Flexible Iterative Solver for Nonconvex, Equality-Constrained Quadratic Subproblems.
• 
  Andrew J. Christlieb, Yuan Liu, Qi Tang, Zhengfu Xu:
  Positivity-Preserving Finite Difference Weighted ENO Schemes with Constrained Transport for Ideal Magnetohydrodynamic Equations.
• 
  Harald Garcke, Claudia Hecht, Michael Hinze, Christian Kahle:
  Numerical Approximation of Phase Field Based Shape and Topology Optimization for Fluids.
• 
  Mengdi Zheng, Boris L. Rozovsky, George E. Karniadakis:
  Adaptive Wick-Malliavin Approximation to Nonlinear SPDEs with Discrete Random Variables.
• 
  Roberto Cavoretto, Alessandra De Rossi:
  A Trivariate Interpolation Algorithm Using a Cube-Partition Searching Procedure.
• 
  Antonio Márquez, Salim Meddahi, Thanh Tran:
  Analyses of Mixed Continuous and Discontinuous Galerkin Methods for the tIme Harmonic Elasticity Problem with Reduced Symmetry.
• 
  Rodrigo B. Platte:
  C^∞ Compactly Supported and Positive Definite Radial Kernels.
• 
  Romain Aubry, Saikat Dey, Eric L. Mestreau,